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Fig. 3 in A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives of the order Enterobacteriales, Oceanospirillales and Xanthomonadales in the class Gammaproteobacteria. Sphingopyxis macrogoltabida IFO 15033T (D13723) was used as an outgroup. Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.02 changes per nucleotide.
Fig. 2 in A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives of the order Aeromonadales, Alteromonadales and Chromatiales in the class Gammaproteobacteria. Sphingopyxis macrogoltabida IFO 15033T (D13723) was used as an outgroup. Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.02 changes per nucleotide.
Fig. 1 in A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria
Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, MD2F 12; 2, HMF2613; 3, HME9674; 4, IMCC12363; 5, HME9272; 6, IMCC12427; 7, 61DPR3; 8, HMF2735; 9, MIH20; 10, Duck L2; 11, WR25; 12, 142-3; 13, HME8565; 14, HMF2475; 15, HMF2842; 16, IMCC12288; 17, IMCC12372; 18, IMCC12398; 19, ET2115; 20, ET131; 21, BM06; 22, 145-5; 23, HMF2483; 24, HMF2783; 25, R1-18; 26, KM2-7; 27, SRYB1; 28, B2-2; 29, B11-1; 30, B11-2; 31, WS26; 32, RK 6Y-4-1; 33, N1-1.
Fig. 3 in A report of 23 unrecorded bacterial species belonging to the class Alphaproteobacteria
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Rhizobiales, Caulobacterales and Rhodobacterales in the class Alphaproteobacteria. Bootstrap values are greater than 70% are shown in the neighbor-joining tree method. Filled circles indicate the nodes recovered by the maximum-likelihood & maximum-parsimony treeing methods. Bar, 0.02 substitutions per nucleotide position.
Fig. 2 in A report of 23 unrecorded bacterial species belonging to the class Alphaproteobacteria
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Rhodobacterales in the class Alphaproteobacteria. Bootstrap values (>70%) are shown in the neighbor-joining method. Filled circles indicate the nodes recovered by the maximum-likelihood & maximum-parsimony treeing algorithms. Bar, 0.02 substitutions per nucleotide position.
Fig. 1 in A report of 23 unrecorded bacterial species belonging to the class Alphaproteobacteria
Fig. 1. Transmission and scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, Mameliella phaeodactyli FIL 61 (TEM); 2, Yangia pacifica T4-2 (TEM); 3, Paracoccus aminovorans YH6C (TEM); 4, Brevundimonas bullata YHD2 (TEM); 5, Brevundimonas variabilis HMF4573 (TEM); 6, Brevundimonas staleyi HMF4667 (TEM); 7, Maricaulis maris HMF6043 (TEM); 8, Labrenzia alba SFD13 (SEM); 9, Ruegeria atlantica SF30 (SEM); 10, Loktanella rosea ZOD2-5 (SEM); 11, Phaeobacter inhibens EC2 (SEM); 12, Dinoroseobacter shibae GLB36 (SEM); 13, Labrenzia aggregata EC2D15 (SEM); 14, Tropicimonas sediminicola CAU 1140 (TEM); 15, Lutimaribacter saemankumensis CAU 1340 (TEM); 16, Litoreibacter albidus LPB0157 (SEM); 17, Sulfitobacter mediterraneus LPB0162 (TEM); 18, Thalassospira profundimaris IMCC25636 (TEM); 19, Hyphomonas jannaschiana IMCC25644 (TEM); 20, Roseivivax pacificus IMCC25645 (TEM); 21, Thalassospira tepidiphila IMCC25646 (TEM); 22, Paracoccus seriniphilus JHR-13 (TEM); 23, Paracoccus yeei CSC-1 (TEM).
Fig. 3 in A report of 39 unrecorded bacterial species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria isolated in 2018
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the class Betaproteobacteria. Numbers at the nodes are levels of bootstrap value (%) based on 1000 replicat- ed datasets; only values above 70% are shown. Escherichia coli ATCC 11775T (X80725) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.
Fig. 5 in A report of 39 unrecorded bacterial species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria isolated in 2018
Fig. 5. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the orders Lysobacterales and Oceanospirillales in the class Gammaproteobacteria. Numbers at the nodes are levels of bootstrap value (%) based on 1000 replicated datasets; only values above 70% are shown. Bacillus subtilis subsp. subtilis NCIB 3610T (ABQL01000001) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.
Fig. 1 in A report of 39 unrecorded bacterial species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria isolated in 2018
Fig. 1. Transmission electron micrographs of cells of the species belonging to the Betaproteobacteria isolated in this study. Strains: 1. MMS18-G 109; 2. MS25; 3. LPB0241; 4. HMF7542; 5. MMS18-M_91; 6. HMF7541; 7. HMF7531; 8. BO221; 9. dNF-3; 10. GA051; 11. HMF7122; 12. CAU 1510; 13. 17G39-22; 14. 18H6F1.
Fig. 2 in A report of 39 unrecorded bacterial species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria isolated in 2018
Fig. 2. Transmission electron micrographs or scanning electron micrographs of cells of the species belonging to the Gammaproteobacteria isolated in this study. Strains: 1. 18N2A1; 2. 18H4A15; 3. HMF9091; 4. KYW1522; 5. CAU 1507; 6. SC100; 7. dN13-1; 8. 18N3A9; 9. 18S2E14; 10. BO208; 11. BO171; 12. HMF9224; 13. H-2; 14. 18S2F3; 15. BT5; 16. KYW1450; 17. HMF9105; 18. SC76; 19. LPB0223; 20. BT57; 21. Hyper-1; 22. BO274; 23. LPB0247; 24. 18H1S12; 25. LPB0246.
Fig. 4 in A report on 38 unrecorded bacterial species in Korea in the class Gammaproteobacteria
Fig. 4. Neighbor-joining (NJ) phylogenetic tree constructed based on nearly complete 16S rRNA gene sequences showing the relationships between 21 isolated strains and their most closely related species from the orders Oceanospirillales, Pseudomonadales, and Vibrionales of the class Gammaproteobacteria. The dots indicate that the corresponding nodes were also recovered in the trees created using the maximum-likelihood (ML) and maximum-parsimony (MP) algorithms. Bootstrap values are indicated as percentages of 1,000 resampled datasets, when greater than 70% (NJ/ML/MP). Bar, 0.01 substitutions per nucleotide position. Bacillus subtilis IAM 12118T (NR_112116.2) is used as an outgroup organism.
Fig. 3 in A report on 38 unrecorded bacterial species in Korea in the class Gammaproteobacteria
Fig. 3. Neighbor-joining (NJ) phylogenetic tree constructed based on nearly complete 16S rRNA gene sequences showing the relationships between 17 isolated strains and their most closely related species from the orders Aeromonadales, Alteromonadales, Cellvibrionales, Enterobacterales, and Lysobacterales of the class Gammaproteobacteria. The dots indicate that the corresponding nodes were also recovered in the trees created using the maximum-likelihood (ML) and maximum-parsimony (MP) algorithms. Bootstrap values are indicated as percentages of 1,000 resampled datasets, when greater than 70% (NJ/ML/MP). Bar, 0.01 substitutions per nucleotide position. Bacillus subtilis IAM 12118T (NR_112116.2) is used as an outgroup organism.
Fig. 1 in A report on 38 unrecorded bacterial species in Korea in the class Gammaproteobacteria
Fig. 1. Transmission electron micrographs of cells of the species in the orders Aeromonadales, Alteromonadales, Cellvibrionales, Enterobacterales and Lysobacterales belonging to the class Gammaproteobacteria in this study. Strain: 1, F-7; 2, HMF6821; 3, CAU 1518; 4, HMF6852; 5, HMF6915; 6, HMF9426; 7, LPB0320; 8, LPB0291; 9, LPB0301; 10, R-6; 11, BT361; 12, LPB0234; 13, BSSL-CR1; 14, HMF6088; 15, HMF6713; 16, HMF9812; 17, jr18.
Individual allotype responses to HEK-293T-based cell lines ex-pressing single MHC class I chain-related gene B alleles
<p><span>Figure S1.</span><span> Individual allotype responses between 64 sera collected from kidney transplant patients and 5 single </span><span>MICB</span><span> allele-expressing cell lines established in </span><span>HLA</span><span> class I, </span><span>MICA,</span><span> and </span><span>MICB</span><span>-null HEK-293T cells. </span><span>HLA</span><span> class I, </span><span>MICA,</span><span> and </span><span>MICB</span><span> genes were removed using CRISPR/Cas9 in previous studies [20, 21]. Some of the 64 sera showed responses to single </span><span>MICA</span><span> allele-expressing cell lines [21]. However, none of the 64 sera showed individual allotype responses in this study.</span></p>
Fig. 4 in A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria
Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA sequences, showing the phylogenetic relationship between strains isolated in this study and their relatives in the orders Burkholderiales, Neisseriales, and Rhodocyclales in the class Betaproteobacteria. Parvularcula oceanus JLT2013T (JPHU01000026) was used as an outgroup. Bootstrap values (>70%) are shown above nodes. Scale bar: 0.02 changes per nucleotide.
Fig. 3 in A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA sequences, showing the phylogenetic relationship between strains isolated in this study and their relatives in the orders Rhodobacterales, Rhodospirillales, and Sphingomonadales in the class Alphaproteobacteria. Burkholderia dabaoshanensis GIMN1.004T (FJ210816) was used as an outgroup. Bootstrap values (>70%) are shown above nodes. Scale bar: 0.02 changes per nucleotide.
Fig. 1 in A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria
Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. The cells were cultured at their optimal growth conditions. Strains: 1, LPB0183; 2, LPB0211; 3, 17J44-22; 4, 17J27-16; 5, KYW1385; 6, BMW10; 7, IMCC34164; 8, IMCC34184; 9, IMCC34185; 10, IMCC34207; 11, IMCC34233; 12, GH4-12; 13, GH1-7; 14, GH1-10; 15, GH2-6; 16, Ibu_S_3; 17, MMS17- GJ036; 18, MMS17-SY214; 19, Gsoil 1028; 20, Gsoil 1111; 21, Gsoil318-1; 22, Gsoil 824; 23, HMF7612; 24, HMF7644; 25, HMF7868; 26, HMF8042; 27, HMF8046; 28, HMF8205; 29, HMF8467; 30, HMF8483; 31, HMF8486; 32, S-1; 33, F-mm3; 34, StC2; 35, BR3409; 36, JMn9; 37, WD42; 38, kw_8; 39, MMS17-GJ039; 40, Gsoil 096; 41, HMF7346; 42, HMF7693; 43, HMF7887; 44, HMF4721; 45, LPB0172; 46, LPB0305.
Fig. 2 in A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA sequences, showing the phylogenetic relationship between strains isolated in this study and their relatives in the orders Parvularculales and Rhizobiales in the class Alphaproteobacteria. Burkholderia dabaoshanensis GIMN1.004T (FJ210816) was used as an outgroup. Bootstrap values (>70%) are shown above nodes. Scale bar: 0.02 changes per nucleotide.
Fig. 6 in A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea
Fig. 6. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationships between the strains isolated in this study and their relatives of the order Sphingomonadales, class Alphaproteobacteria. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes. Scale bar: 0.01 changes per nucleotide.
Fig. 4 in A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea
Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationships between the strains isolated in this study and their relatives in the order Rhodobacterales, class Alphaproteobacteria. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes. Scale bar: 0.01 changes per nucleotide.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.