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157
datasets available to search
ShareScore release 0.7.1
Dataset results
157 results for “Environmental stress”
A conserved C2H2 zinc finger protein, Rel1, links ribosome biogenesis to sexual development and environmental stress response in a ubiquitous human fungal pathogen
GEO Series GSE296246. Cryptococcus deneoformans. 9 samples. Type: Expression profiling by high throughput sequencing.
Environmental stress to Ethiopia indigenous chicken breeds induce immune signaling response among transcriptomic changes in heart, breast muscle and spleen tissues
GEO Series GSE119387. Gallus gallus. 54 samples. Type: Expression profiling by high throughput sequencing.
Cathepsin X is a conserved cell death protein involved in algal response to environmental stress
GEO Series GSE266642. Phaeodactylum tricornutum. 9 samples. Type: Expression profiling by high throughput sequencing.
The Rv2166c Transcriptional Regulator's On/Off Switch Modulates Mycobacteria Cell Wall Biosynthesis and Cell Division, Enhancing Environmental Stress Resistance
GEO Series GSE250112. Mycolicibacterium smegmatis MC2 155. 4 samples. Type: Expression profiling by high throughput sequencing.
Timing of transcription controls the selective translation of newly synthesized mRNAs during acute environmental stress
GEO Series GSE263827. Saccharomyces cerevisiae. 112 samples. Type: Expression profiling by high throughput sequencing; Other.
Biogenerated oxygen-related environmental stressed apoptotic body targets endothelial cells
GEO Series GSE240216. Homo sapiens. 9 samples. Type: Non-coding RNA profiling by array.
A chromatin-driven mechanism of transcription in ammonia-oxidizing archaea under environmental stress [RNA-seq]
GEO Series GSE249032. Nitrososphaera viennensis EN76. 4 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic response of the auxotrophic Mycobacterium avium subspecies paratuberculosis (MAP) leuD mutant under environmental stresses
GEO Series GSE36053. Mycobacterium avium subsp. paratuberculosis; Mycobacterium avium subsp. paratuberculosis K-10. 24 samples. Type: Expression profiling by array.
A transcriptomic survey of the impact of environmental stress on response to dengue virus in the mosquito, Aedes aegypti
GEO Series GSE115935. Aedes aegypti. 24 samples. Type: Expression profiling by high throughput sequencing.
Figure 6 in Community properties of benthic molluscs as indicators of environmental stress induced by organic enrichment
Figure 6. Effect of increasing organic load on trophic net structure.
Reactivity of the corticotrope axis in rainbow trout (Oncorhynchus mykiss) exposed to chronic environmental stress
GEO Series GSE126748. Oncorhynchus mykiss. 31 samples. Type: Expression profiling by array.
Impact of yihO/Q deletion in O-Antigen capsule formation, environmental stress mitigation, and intracellular virulence, survival and replication of Salmonella Typhimurium
GEO Series GSE272846. Salmonella enterica subsp. enterica serovar Typhimurium. 4 samples. Type: Expression profiling by high throughput sequencing.
A chromatin-driven mechanism of transcription in ammonia-oxidizing archaea under environmental stress [MNase-seq]
GEO Series GSE249031. Nitrososphaera viennensis EN76. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A chromatin-driven mechanism of transcription in ammonia-oxidizing archaea under environmental stress
GEO Series GSE249033. Nitrososphaera viennensis EN76. 6 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Acid- and bile-stress induced trnscriptomes of epidemic and environmental strains of Listeria monocytogenes
GEO Series GSE10603. Listeria monocytogenes. 101 samples. Type: Expression profiling by array.
Global transcriptional response of wild type and transcription factor deletion strains of Saccharomyces cerevisiae to the environmental stress of cold shock and subsequent recovery
GEO Series GSE83656. Saccharomyces cerevisiae. 137 samples. Type: Expression profiling by array.
Prenatal exposure to environmental air pollution and psychosocial stress jointly contribute to the epigenetic regulation of the serotonin transporter gene in newborns
<p>This database includes the raw data linked with the paper “Prenatal exposure to environmental air pollution and psychosocial stress jointly contribute to the epigenetic regulation of the serotonin transporter gene in newborns” accepted for publication on Molecular Psychiatry. This study is part of the longitudinal and multi-centric “Measuring the outcomes of maternal COVID-19-related prenatal exposure (MOM-COPE)” study. Here, we report on the interactive influence of variations in antenatal exposures to maternal pandemic-related stress (PRS) and PM2.5 on SLC6A4 DNAm levels in newborns.</p> <p>Procedures</p> <p>Mother–infant dyads (N=307) were enrolled at delivery during the COVID-19 pandemic. Infants’ methylation status was assessed in 13 CpG sites within the SLC6A4 gene’s region (chr17:28562750–28562958) in buccal cells at birth and women retrospectively report on PRS. PM2.5 exposure throughout the entire gestation and at each gestational trimester was estimated using a spatiotemporal model based on residential address.</p> <p> </p> <p>Among several potentially confounding socio-demographic and health-related factors, infant’s sex was significantly associated with infants’ SLC6A4 DNAm levels, thus hierarchical regression models were adjusted for infant’s sex.</p> <p>Mother–infant dyads (N = 276) were recruited at delivery. Maternal trait anxiety, as a marker of antenatal chronic stress exposure, was assessed soon after delivery using the Stait-Trait Anxiety Inventory (STAI-Y). Infants’ BDNF DNAm at birth was assessed in 11 CpG sites in buccal cells whereas infants’ NE was assessed at 3 (N = 225) and 6 months (N = 189) using the Infant Behavior Questionnaire-Revised (IBQ-R).</p> <p>Analytical plan</p> <p>Principal component analysis (PCA) was used to reduce the number of CpG sites into a smaller set of factors.</p> <p>A four-factor solution, where the targeted CpG sites were aggregated in 4 main factors, showed the best fit to the data (Table 2). Principal Component 1 (PC1; composed of 6 CpG sites) and Principal Component 2 (PC2; composed of 3 CpG sites) accounted, respectively, for 31.6% and 12.8% of the total variance in SLC6A4 DNAm and were used in further analyses. Pearson correlations and independent samples t-tests were employed to explore the potential effect of sociodemographic and health-related variables on infant methylation levels. All variables found to be significantly associated with the outcomes examined were included as covariates in subsequent analyses. Separate hierarchical regression analyses were performed to evaluate the independent and interactive effects of maternal PRS and exposure to air pollution on infant methylation levels.</p> <p>Findings in brief</p> <p>Higher levels of SLC6A4 DNAm at 6 CpG sites were found in newborns born to mothers reporting higher levels of antenatal PRS and greater PM2.5 exposure across gestation, while adjusting for infant’s sex. These effects were especially evident when exposure to elevated PM2.5 occurred during the second trimester of pregnancy.</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.