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175
datasets available to search
ShareScore release 0.9.0
Dataset results
175 results for “Long read sequencing”
Long-read nanopore sequencing (Nanopore-seq) of PQBP1 knockdown in ovarian cancer cells
GEO Series GSE223088. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing [DataSet1: scNanoATAC-seq]
GEO Series GSE194022. Mus musculus; Homo sapiens. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Long-read sequencing of CLL and MDS patients uncovers molecular effects of SF3B1 mutations in cancer (SF3B1 & U2AF2 iCLIP)
GEO Series GSE247658. Homo sapiens. 9 samples. Type: Other.
Targeting the CLK2/SRSF9 splicing axis in prostate cancer leads to decreased ARV7 expression in an rs5918762 allele-dependent manner (ONT long read sequencing)
GEO Series GSE259334. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Single-molecule long-read sequencing reveals a conserved intact long RNA profile in sperm
GEO Series GSE137490. Homo sapiens; Mus musculus. 15 samples. Type: Expression profiling by high throughput sequencing.
LoopSeq Synthetic Long Read Sequencing Uncovers Isoform Modulation in the progression of Colon Cancer
GEO Series GSE155921. synthetic construct; Homo sapiens. 26 samples. Type: Expression profiling by high throughput sequencing; Other.
Disruption of RNAPII transcription elongation links Oncogenic splicing factor mutations to replciation stress and targetable alterations in chromatin landscape [Long read sequencing]
GEO Series GSE225992. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Long read subcellular fractionation and sequencing reveals the translational fate of full length mRNA isoforms during neuronal differentiation
GEO Series GSE244655. Homo sapiens. 40 samples. Type: Expression profiling by high throughput sequencing; Other.
LoopSeq Synthetic Long Read Sequencing Uncovers Isoform Modulation in the progression of Colon Cancer [RNA-seq]
GEO Series GSE155375. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing [DATASet2: bulkATAC-seq]
GEO Series GSE194023. Mus musculus; Homo sapiens. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
PacBio long-read RNA-sequencing to identify differentially expressed genes and repetitive elements between Wild Type RBM4 KO HAP1 cell line samples
GEO Series GSE147896. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
High-throughput manual-quality annotation of full-length long noncoding RNAs with Capture Long-Read Sequencing (CLS)
GEO Series GSE93848. Mus musculus; Homo sapiens. 36 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Long read sequencing of nuclear RNAs from human coronary artery smooth muscle cells
GEO Series GSE165445. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
HSV1 transcriptosome analysis by PAcBio long read sequencing
GEO Series GSE97785. Human alphaherpesvirus 1. 6 samples. Type: Expression profiling by high throughput sequencing.
Investigate FOXA2 mediated DNA demethylation during NEPC transformation by Nanopore Long Read sequencing.
GEO Series GSE239274. Homo sapiens. 13 samples. Type: Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
An isoform-resolution transcriptomic atlas of colorectal cancer from long-read single-cell sequencing
<p>Relavant codes and notebooks for data analysis: <a href="https://github.com/lzx325/CRC-atlas">https://github.com/lzx325/CRC-atlas</a></p>
Accurate isoform quantification by joint short- and long-read RNA-sequencing
GEO Series GSE271530. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Long-read sequencing for the assessment of therapeutic CRISPR/Cas9 strategy for the removal of aberrant DM1-causing CTG repeats in DMPK gene locus
GEO Series GSE279054. Homo sapiens. 5 samples. Type: Other.
Long-read sequencing reveals increased occurrence of genomic variants and adenosine methylation in Bacillus pumilus SAFR-032 after long-duration flight exposure onboard the International Space Station
Bacillus pumilus SAFR-032, an endospore-forming bacterial strain, was investigated to determine its methylation pattern (methylome) change, compared to ground control, after direct exposure to space conditions onboard the International Space Station (ISS) for 1.5 years. The resulting ISS-flown and non-flown strains were sequenced using the Nanopore MinION and an in-house method and pipeline to identify methylated positions in the genome. Our analysis indicated genomic variants and m6A methylation increased in the ISS-flown SAFR-032. To complement the broader omics investigation and explore phenotypic changes, ISS-flown and non-flown strains were compared in a series of laboratory-based chamber experiments using an X-ray irradiation source (doses applied at 250, 500, 750, 1000 and 1250 Gy); results show a potentially higher survival fraction of ISS-flown DS2 at the two highest exposures. Taken together, results from this study document lasting changes to the genome by methylation, potentially triggered by conditions in spaceflight, with functional consequences for the resistance of bacteria to stressors expected on long-duration missions beyond low Earth orbit.
Long-read RNA sequencing reveals synaptic genes with differential isoform usage in schizophrenia [long-read RNAseq ]
GEO Series GSE282551. Homo sapiens. 30 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.