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266 results for “Protein Modelling”

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zenodo28/100

GcForest-based Compound-Protein Interaction Prediction Model and Its Application in Discovering Small-Molecule Drugs Targeting CD47

<p><strong>This is a file of all raw data and processed data concerned in the article &quot;GcForest-based Compound-Protein Interaction Prediction Model and Its Application in Discovering Small-Molecule Drugs Targeting CD47&quot;, this file contain 6 sub-files, namely&nbsp;GCVec&mdash;&mdash;humans,&nbsp;GCVec&mdash;&mdash;celegans,&nbsp;GCVec&mdash;&mdash;challenging dataset,&nbsp;GCVec&mdash;&mdash;latest BindingDB, GCVec&mdash;&mdash;known&nbsp;CD47 inhibitors,&nbsp;GCVec&mdash;&mdash;specs, respectively, fully cover all parts of the article.</strong></p>

opencc-by-4.0Oct 2021View details →
dryad28/100

Data from: Residue proximity information and protein model discrimination using saturation-suppressor mutagenesis

Open the record for dataset details and reuse information.

publicDec 2015View details →
dryad28/100

Data from: Biophysically inspired model for functionalized nanocarrier adhesion to cell surface: roles of protein expression and mechanical factors

Open the record for dataset details and reuse information.

publicMay 2016View details →
dryad28/100

Data from: A branch-heterogeneous model of protein evolution for efficient inference of ancestral sequences

Open the record for dataset details and reuse information.

publicMar 2013View details →
dryad28/100

Data from: Using viromes to predict novel immune proteins in non-model organisms

Open the record for dataset details and reuse information.

publicAug 2016View details →
geo24/100

A prototypical non-malignant epithelial model to study genome dynamics and concurrently monitor micro-RNAs and proteins in situ during oncogene-induced senescence (miRNA-seq)

GEO Series GSE106588. Homo sapiens. 12 samples. Type: Non-coding RNA profiling by high throughput sequencing.

openGEO-OpenNov 2017View details →
geo24/100

Specific binding sites on Rhesus rotavirus capsid protein dictates the method of endocytosis inducing the murine model of biliary atresia

GEO Series GSE267721. Mus musculus. 6 samples. Type: Expression profiling by array.

openGEO-OpenMay 2024View details →
geo24/100

HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequence

GEO Series GSE221870. Homo sapiens. 76 samples. Type: Other.

openGEO-OpenJul 2023View details →
geo24/100

Mutant huntingtin stalls ribosomes and represses protein synthesis in a cellular model of Huntington disease [Ribo-seq]

GEO Series GSE146674. Mus musculus. 9 samples. Type: Other.

openGEO-OpenJul 2020View details →
geo24/100

The major urinary protein gene cluster knockout mouse as a novel model for translational metabolism research

GEO Series GSE188158. Mus musculus. 47 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.

openGEO-OpenAug 2022View details →
geo24/100

Overexpression of extracellular matrix proteins, increased cell death and reduced cell proliferation contribute to the pathophysiology of microphthalmia across in vitro patient-derived models

GEO Series GSE265940. Homo sapiens. 48 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenJun 2024View details →
geo24/100

High-throughput data and modeling reveal insights into the mechanisms of cooperative DNA-binding by transcription factor proteins

GEO Series GSE171735. Homo sapiens; synthetic construct. 5 samples. Type: Other.

openGEO-OpenJul 2023View details →
geo24/100

Endothelial dysfunction contributes to chondrocyte senescence associated with Insulin-like growth factor-binding protein-6 in a spontaneously hypertensive rat model

GEO Series GSE302827. Rattus norvegicus. 6 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenAug 2025View details →
geo24/100

Efficacy of BET protein proteolysis targeted chimera-based combinations against novel patient-derived models of Richter Transformation-Diffuse Large B-Cell Lymphoma [RNA-Seq]

GEO Series GSE154462. Homo sapiens. 27 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenAug 2021View details →
geo24/100

Multiomics of GCN4-dependent replicative lifespan extension models reveals Gcn4 as a regulator of protein turnover in yeast

GEO Series GSE242739. Saccharomyces cerevisiae. 96 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenNov 2023View details →
geo24/100

Gene expression signatures of C-terminal shorter RUNX1 protein hematopoietic models

GEO Series GSE48523. Homo sapiens. 8 samples. Type: Expression profiling by array.

openGEO-OpenJan 2014View details →
geo24/100

Modeling OPMD in myotube cultures reveals reduced accumulation of soluble mutant PABPN1 protein

GEO Series GSE29909. Mus musculus. 10 samples. Type: Expression profiling by array.

openGEO-OpenSep 2011View details →
geo24/100

Functional analysis across model systems implicates ribosomal proteins in growth and proliferation defects associated with hypoplastic left heart syndrome

GEO Series GSE207658. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenJul 2022View details →
geo24/100

Intranasal administration of adenoviral vaccines expressing SARS-CoV-2 spike protein improves vaccine immunity in mouse models

GEO Series GSE223476. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenMay 2023View details →
geo24/100

A multiple reporter protein tolerant mouse model

GEO Series GSE147757. Mus musculus. 22 samples. Type: Expression profiling by high throughput sequencing.

openGEO-OpenApr 2020View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

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