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2,107 results for “Spectrum”
Synthetic spectrum covering the optical range (3000 to 10000 angstrom)
<p>NWKZKA.spr lists in two columns a surface stellar model flux (Eddington flux): column (1) wavelength in units of angstrom, and column (2) the flux in units of erg/cm^2/s/angstrom/steradian.</p>
Light spectrum matters: Interactive effects of light and nutrients on phytoplankton communities and trophic transfer
<p>Phytoplankton is highly sensitive to both the quantity (intensity) and quality (spectrum) of available light, due to a large range of light-absorbing pigments. While light is considered as a main driver for trophic energy transfer, focus has been primarily on the intensity of light. This study investigated the role of different light spectra on the community structure and biochemical composition of natural phytoplankton. We found that light spectrum affects the species composition and biochemistry of phytoplankton communities with these effects being highly dependent on light intensity and nutrients. Additionally, we tested for potential nutritional constraints for the zooplankton species <em>Daphnia pulex</em> in response to changes in the phytoplankton community and found different growth responses of <em>D. pulex</em> as a result of changing mineral and biochemical growth contraints for the <em>Daphnia</em> species. We conclude that, beyond nutrients and light intensity, also the light spectrum influences plankton dynamics and trophic transfer in aquatic systems.</p>
AERPAW helikite spectrum measurements at Packapalooza Festival in Aug 2023
<p>We conducted a spectrum monitoring experiment using a helikite in an urban environment. We float the helikite-mounted software-defined radio (SDR) and global positioning system (GPS) receivers around 90 minutes from noon during NC State's Packapalooza festival in August 2023. The helikite holds a low altitude of around 5 m for 45 minutes and then flies up to around 140 m. After the helikite holds height for a few minutes, it gradually goes down to the ground. The spectrum is swept up to 6 GHz. A single spectrum sweeping takes around 15 seconds and a total of 364 sweeping is executed during the experiment.</p>
data for publication "Benefits of biobased fertilizers as substitutes for synthetic nitrogen fertilizers: Field assessment combining minirhizotron and UAV-based spectrum sensing technologies"
<p>Dataset for the scientific publication "Benefits of biobased fertilizers as substitutes for synthetic nitrogen fertilizers: Field assessment combining minirhizotron and UAV-based spectrum sensing technologies" in the Journal Frontiers of Environmental Science. </p><p><a href="https://doi.org/10.3389/fenvs.2022.988932">https://doi.org/10.3389/fenvs.2022.988932</a></p>
Radiationless Decay Spectrum of O 1s Double Core Holes in Liquid Water - data
<p>Data set pertaining to the publication "Radiationless Decay Spectrum of O 1s Double Core Holes in Liquid Water", published in <a href="https://doi.org/10.1063/5.0205994"><em>J. Chem. Phys.</em> 160, 194503 (2024)</a>.</p> <p>The publication describes results on the Auger emission of double core hole states created by single photon photo-double-ionization, explored experimentally by liquid jet electron spectra and via simulations. Here we provide the underlying experimental data including metadata, ascii representations of the traces shown in the figures, and the coordinates used in the simulations.</p> <p>Files with extension .h5 are hdf5-files structured according to the NeXus standard v2022.07, see<br>https://www.nexusformat.org/<br>https://fairmat-experimental.github.io/nexus-fairmat-proposal/50433d9039b3f33299bab338998acb5335cd8951/mpes-structure.html<br>NeXus data files can be opened with any software capable of opening hdf5-structured files. The following viewers are adapted to the specifics of the NeXus data format:<br>* nexpy (distributed with python)<br>* https://h5web.panosc.eu/h5wasm (web-based NeXus viewer maintained by the European Photon and Neutron Open Science Cloud-consortium)<br>Additionally, some properties of our liquid jet sample environment are described by extensions to standard NeXus explained in a notes-section in each file.</p> <p>In each NeXus file-entry, two types of spectra are shown:<br>1. Sweep-averaged spectra, integrated over the non-dispersive coordinate of our detector ('data').<br>2. As-measured data ('raw').</p> <p>Files with extension .txt or with extension .xyz are tab-separated or space-separated ascii-files. Files with extension .asc are comma-separated ascii-files. Files with extension .zip are compressed multi-file archives, MIME-type application/zip.</p> <p>The following files are provided:</p> <p> </p> <table> <tbody> <tr> <td>Filename</td> <td>Content</td> </tr> <tr> <td> <div><a href="../api/records/10523681/draft/files/DataFig2_3_4.zip/content" target="_blank" rel="noopener noreferrer">DataFig2_3_4.zip</a></div> </td> <td>Ascii representation of the experimental data traces shown in Fig.s 3, 4 and 5</td> </tr> <tr> <td> <div><a href="../api/records/10523681/draft/files/dataFig5_6_7.zip/content" target="_blank" rel="noopener noreferrer">dataFig5_6_7.zip</a></div> </td> <td>Ascii representation of the simulated traces shown in Fig.s 6, 7 and 8</td> </tr> <tr> <td> <div><a href="../api/records/10523681/draft/files/DataSFig1-4.zip/content" target="_blank" rel="noopener noreferrer">DataSFig1-4.zip</a></div> </td> <td>Ascii representation of the experimental data traces shown in Supplementary Fig.s 1,3 and 4</td> </tr> <tr> <td> <div><a href="../api/records/10523681/draft/files/DataSFig5.zip/content" target="_blank" rel="noopener noreferrer">DataSFig5.zip</a></div> </td> <td>Ascii representation of the experimental data traces shown in Supplementary Fig. 5. Data <br>are shown before normalization to unity.</td> </tr> <tr> <td> <div><a href="../api/records/10523681/draft/files/DataSFig6-8.zip/content" target="_blank" rel="noopener noreferrer">DataSFig6-8.zip</a></div> </td> <td>Ascii representation of the experimental data traces shown in Supplementary Fig.s 6,7 and 8</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/dch-1812.h5/content" target="_blank" rel="noopener noreferrer">dch-1812.h5</a></td> <td>Experimental data, december 2018 campaign.</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/dch-1904s1.h5/content" target="_blank" rel="noopener noreferrer">dch-1904s1.h5</a></td> <td>Experimental data, april 2019 campaign, data set 1.</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/dch-1904s2.h5/content" target="_blank" rel="noopener noreferrer">dch-1904s2.h5</a></td> <td>Experimental data, april 2019 campaign, data set 2.</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/dch-1909h2o.h5/content" target="_blank" rel="noopener noreferrer">dch-1909h2o.h5</a></td> <td>Experimental data, september 2019 campaign.</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/dch-1909d2o.h5/content" target="_blank" rel="noopener noreferrer">dch-1909d2o.h5</a></td> <td>Experimental data, september 2019 campaign, deuterated water.</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/dch-2009h2o.h5/content" target="_blank" rel="noopener noreferrer">dch-2009h2o.h5</a></td> <td>Experimental data, september 2020 campaign.</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/dch-2009d2o.h5/content" target="_blank" rel="noopener noreferrer">dch-2009d2o.h5</a></td> <td>Experimental data, september 2020 campaign, deuterated water.</td> </tr> <tr> <td><a href="../api/records/10523681/draft/files/optimized_pentamer.xyz/content" target="_blank" rel="noopener noreferrer">optimized_pentamer.xyz</a></td> <td>Cartesian coordinates of the water pentamer used for the simulations, in Å.</td> </tr> </tbody> </table> <p> </p> <p>In case you have any questions regarding this data set please contact: Uwe Hergenhahn, uhe@fhi.mpg.de .</p>
Low-dose biliatresone treatment of pregnant mice causes subclinical biliary disease in their offspring: Evidence for a spectrum of neonatal injury
<p>Biliary atresia is a neonatal disease characterized by damage, inflammation, and fibrosis of the liver and bile ducts and by abnormal bile metabolism. It likely results from a prenatal environmental exposure that spares the mother and affects the fetus. Our aim was to develop a model of fetal injury by exposing pregnant mice to low-dose biliatresone, a plant toxin implicated in biliary atresia in livestock, and then to determine whether there was a hepatobiliary phenotype in their pups.<strong> </strong>Pregnant mice were treated orally with 15 mg/kg/d biliatresone for 2 days. Histology of the liver and bile ducts, serum bile acids, and liver immune cells of pups from treated mothers were analyzed at P5 and P21. Pups had no evidence of histological liver or bile duct injury or fibrosis at either timepoint. In addition, growth was normal. However, serum levels of glycocholic acid were elevated at P5, suggesting altered bile metabolism, and the serum bile acid profile became increasingly abnormal through P21, with enhanced glycine conjugation of bile acids. There was also immune cell activation observed in the liver at P21. These results suggest that prenatal exposure to low doses of an environmental toxin can cause subclinical disease including liver inflammation and aberrant bile metabolism even in the absence of histological changes. This finding suggests a wide potential spectrum of disease after fetal biliary injury.</p>
Discharge spectrum of Acetonitrile
<p>Discharge experiment of acetonitrile taken with acetonitrile in an external reservoir and a backing gas of Ar/He flowed over the reservoir. The discharge was performed with a 1 kV discharge.</p>
Datasets for "Micromonosporaceae Biosynthetic Gene Cluster Diversity Highlights the Need for Broad Spectrum Investigation"
<p>In this data collection is:<br><strong>Data S1</strong>: A folder with all the fasta files, representing the 42 strains (41 <em>Micromonosporaceae</em>, 1 <em>Streptomycetaceae</em>).<br><strong>Data S2</strong>: A folder with all the .gbk files for the BGC regions predicted by antiSMASH v5.1.1. These files were used as inputs for BiG-SCAPE and BiG-SLiCE.<br><strong>Data S3</strong>: A folder with all the .gbk files for the BGC regions predicted by antiSMASH v6.1.0.<br><strong>Data S4</strong>: A folder containing all the Quast outputs for the 42 strains.<br><strong>Data S5</strong>: A folder containing all the BUSCO outputs for the 42 strains. Example scripts are provided for scraping relevant information from the individual BUSCO outputs.<br><strong>Data S6</strong>: A folder containing GTDB (Genome Taxonomy Database) classification results, and species-level grouping results using FastANI (95% cutoff).<br><strong>Data S7</strong>: A folder containing an Interactive Tree of Life (iTOL)-compatible bar chart annotation using antiSMASH v5.1.1 BGC region information.<br><strong>Data S8</strong>: A folder containing a word document that describes the parameters used with Ubuntu WSL (Windows Subsystem for Linux) on the command line for programs antiSMASH v6.1.2, BiG-SCAPE v1.1.2, and BiG-SLiCE v1.1.1. Also included are parameters for MDSC in python. An example script is also provided for batch queries of BGCs against BiG-SLiCE v1.1.1’s pre-processed dataset of ~1.2 million BGCs.<br><strong>Data S9</strong>: A folder containing the BiG-SCAPE visualization of the 38 <em>Micromonosporaceae</em> (post-QC filtering, excluding WMMA1363, WMMB482, WMMB486, and WMMC500) in Cytoscape.<br><strong>Data S10</strong>: A folder containing:<br>The pre-processed dataset of 1.2 million BGCs from BiG-SLiCE.<br>All report folders generated by BiG-SLiCE for the 779 <em>Micromonosporaceae </em>BGCs queried against the 1.2 million BGCs.<br>The results data.db and associated folders for the pre-processed dataset of 1.2 million BGCs.<br><strong>Data S11</strong>: A folder containing the scripts necessary to regenerate the figures and perform independent analyses, and the relevant data used for the analyses.<br><strong>Data S12: </strong>A folder containing the results of the nucleotide blast of WMMA1947.region12's siderophore contig against WMMD1120.region14's siderophore contig.</p> <p><strong>Supplementary Information: </strong>Supplementary Table S1 and Supplementary Figures S1-S181.</p>
Radiative and climatic impacts of coarse aerosols scattering in the long-wave spectrum
<p>The data deposited on the site concern the output of the ARPEGE climate model at monthly resolution. This concerns the different variables used and analysed in the article. They include simulations with LW aerosol scattering (LWAS) and without aerosol scattering (NOLWAS). The data description, resolution and information on fields outputs are available in each NetCDF file submitted.</p>
Spectrum, time course, stages, and a proposal for the diagnosis of histamine intolerance in general practice: A Nonrandomized, Quasi-Experimental Study - Supplementary material 1 and supplementary material 2 for "Spectrum, time course, stages, and a proposal for the diagnosis of histamine intolerance in general practice: A Nonrandomized, Quasi-Experimental Study"
<p><span>File name: Supplementary material 1. All data.xls</span></p> <p><span>Title of data: Questionnaire, all patients’ answers. Number of patient-doctor meetings with upper respiratory symptoms in primary care</span></p> <p><span>Description of data: The administered questionnaires (first/initial and second/post-diet). All patients’ answers. Number of patient-doctor meetings 01.09.2021-27.09.2024. with upper respiratory symptoms in primary care.</span></p> <p><span> </span></p> <p><span>File name: Supplementary material 2. Educational material and proposed questionnaire.doc</span></p> <p><span>Title of data: Proposed questionnaire for histamine intolerance in primary care. Educational material for patients with histamine intolerance</span></p> <p><span>Description of data: Proposed questionnaire for HIT in primary care. Educational material for patients to help establish </span><span>cause-and-effect relationships between their meals and their experienced symptoms. Food-symptom diary.<span><br></span></span></p>
Spectrum and Temperature Evolution of Lightning Channel and Dependence on Discharge Feature
<p>Temperature is one of the crucial parameters reflecting the energy and current transfer characteristics in the lightning discharge channel. According to the spectra of eight return strokes recorded simultaneously by two high-speed slitless spectrographs with different time resolutions, the spectral-structure and temperature evolution of the return stroke channels over time was quantitatively analyzed. Different from the previous report, one of the spectrographs has recorded the ionic lines in the spectra within approximately 200 microseconds during the return stroke. The ionic line intensity decayed rapidly with time as the current declined, while the atomic line intensity decreased more slowly. The spectral-structure evolution characteristics indicate that the ionic lines in the spectra existed throughout the discharge current process (including the continuing current (CC) stage). Additionally, it further suggests that the ionic line intensities are associated with the discharge currents and that their radiation mechanism is closely related to the collision excitation under the action of strong currents. The temperature calculated using the ionic lines can reflect the thermodynamic properties of the current-carrying channel. The temperature calculated using atomic lines is significantly lower than that calculated using the ionic lines in the same spectrum. The radiation mechanism of the atomic lines differs from that of the ionic lines. Compared with the decay of the ionic-line intensity, the decline of the channel temperature is slower, and there is even a slight increase in the CC stage. This property reflects the effect of the current action integral.</p>
Spectrum and Temperature Evolution of Lightning Channel and Dependence on Discharge Feature
<p>Temperature is one of the crucial parameters reflecting the energy and current transfer characteristics in the lightning discharge channel. According to the spectra of eight return strokes recorded simultaneously by two high-speed slitless spectrographs with different time resolutions, the spectral-structure and temperature evolution of the return stroke channels over time was quantitatively analyzed. Different from the previous report, one of the spectrographs has recorded the ionic lines in the spectra within approximately 200 microseconds during the return stroke. The ionic line intensity decayed rapidly with time as the current declined, while the atomic line intensity decreased more slowly. The spectral-structure evolution characteristics indicate that the ionic lines in the spectra existed throughout the discharge current process (including the continuing current (CC) stage). Additionally, it further suggests that the ionic line intensities are associated with the discharge currents and that their radiation mechanism is closely related to the collision excitation under the action of strong currents. The temperature calculated using the ionic lines can reflect the thermodynamic properties of the current-carrying channel. The temperature calculated using atomic lines is significantly lower than that calculated using the ionic lines in the same spectrum. The radiation mechanism of the atomic lines differs from that of the ionic lines. Compared with the decay of the ionic-line intensity, the decline of the channel temperature is slower, and there is even a slight increase in the CC stage. This property reflects the effect of the current action integral.</p>
OAM sorted spectrum of a chiral pattern fabricated on a synthetic hologram
<p>here are the collected data of the spectra obtained from an OAM sorter used to study the beam generated from a spiral pattern. Further details on how we used this chiral patterns to confirms the versatility of the OAM spectrum in studying chiral patterns can be found at https://arxiv.org/abs/2110.03391</p>
Polyploidy promotes divergent evolution across the leaf economics spectrum and plant edaphic niche in the Dianthus broteri complex
<ol> <li>The evolution of the leaf economics spectrum (LES) is known to be constrained by genetic relatedness but also promoted at small geographic and phylogenetic scales. In those cases, we hypothesised that polyploidy would play a prominent role as an outstanding source of functional divergence and adaptive potential.</li> <li>We registered leaf-level nutrient, water and light economy related traits from the LES as well as edaphic properties in the four cytotypes of the autopolyploid <i>Dianthus broteri</i> complex (2×, 4×, 6× and 12×). We analysed the effect of ploidy level on the integration of the LES network, checked if concerted evolution occurred between LES and soil niche and tested the influence of phylogeny on the variables. Alternative evolutionary models for both sets of traits were compared.</li> <li> <span>We found higher divergence of polyploids (especially 6</span>×<span> and 12</span>×<span>) compared to diploids</span> in the LES and soil niche, but these traits are not coevolving. <span>6</span>×<span> and 12</span>× showed opposite ecological strategies regarding resource use and higher uncoupling of the LES network. Early divergence of traits prevailed in both LES and edaphic niche (supported by better fitted evolutionary models with one optimum per cytotype), but post-polyploidization processes played an important role for the photochemical behaviour.</li> <li> <i>Synthesis.</i><b> </b><span>Our results indicated shifts in ecological strategies across <i>D. broteri</i> cytotypes and suggested a powerful role of polyploidy in overcoming constraints for the evolution of plant functional traits.</span> </li> </ol>
A modified fluctuation assay reveals a natural mutator phenotype that drives mutation spectrum variation within Saccharomyces cerevisiae
<p>Although studies of <em>Saccharomyces cerevisiae</em> have provided many insights into mutagenesis and DNA repair, most of this work has focused on a few laboratory strains. Much less is known about the phenotypic effects of natural variation within <em>S. cerevisiae</em>'s DNA repair pathways. Here, we use natural polymorphisms to detect historical mutation spectrum differences among several wild and domesticated <em>S. cerevisiae</em> strains. To determine whether these differences are likely caused by genetic mutation rate modifiers, we use a modified fluctuation assay with a <em>CAN1</em> reporter to measure de novo mutation rates and spectra in 16 of the analyzed strains. We measure a 10-fold range of mutation rates and identify two strains with distinctive mutation spectra. These strains, known as AEQ and AAR, come from the panel's 'Mosaic beer' clade and share an enrichment for C > A mutations that is also observed in rare variation segregating throughout the genomes of several Mosaic beer and Mixed origin strains. Both AEQ and AAR are haploid derivatives of the diploid natural isolate CBS 1782, whose rare polymorphisms are enriched for C > A as well, suggesting that the underlying mutator allele is likely active in nature. We use a plasmid complementation test to show that AAR and AEQ share a mutator allele in the DNA repair gene <em>OGG1</em>, which excises 8-oxoguanine lesions that can cause C > A mutations if left unrepaired.</p>
Ripples reflect a spectrum of synchronous spiking activity in human anterior temporal lobe
<p>Direct brain recordings have provided important insights into how high-frequency activity captured through intracranial EEG (iEEG) supports human memory retrieval. The extent to which such activity is comprised of transient fluctuations that reflect the dynamic coordination of underlying neurons, however, remains unclear. Here, we simultaneously record iEEG, local field potential (LFP), and single unit activity in the human temporal cortex. We demonstrate that fast oscillations within the previously identified 80–120 Hz ripple band contribute to broadband high-frequency activity in the human cortex. These ripple oscillations exhibit a spectrum of amplitudes and durations related to the amount of underlying neuronal spiking. Ripples in the macro-scale iEEG are related to the number and synchrony of ripples in the micro-scale LFP, which in turn are related to the synchrony of neuronal spiking. Our data suggest that neural activity in the human temporal lobe is organized into transient bouts of ripple oscillations that reflect underlying bursts of spiking activity.</p>
A heterothermic spectrum in hummingbirds
<p>Many small endotherms use torpor, saving energy by a controlled reduction of their body temperature and metabolic rate. Some species (e.g. arctic ground squirrels, hummingbirds) enter deep torpor, dropping their body temperatures by 23-37 &[deg]C, while others can only enter shallow torpor (e.g., pigeons, 3-10 &[deg]C reductions). However, deep torpor in mammals can increase predation risk (unless animals are in burrows or caves), inhibit immune function, and result in sleep deprivation, so even for species that can enter deep torpor, facultative shallow torpor might help balance energy savings with these potential costs. Deep torpor occurs in three avian orders. Although the literature hints that some bird species can use both shallow and deep torpor, little empirical evidence of such an avian torpor spectrum exists. We infrared imaged three hummingbird species that are known to use deep torpor, under natural temperature and light cycles, to test if they were also capable of shallow torpor. All three species used both deep and shallow torpor, often on the same night. Depending on the species, they used shallow torpor for 5-35% of the night. The presence of a bird torpor spectrum indicates a capacity for fine-scale physiological and genetic regulation of avian torpid metabolism.</p>
dataset related to article "EXPANDING THE GENETIC SPECTRUM OF PRIMARY FAMILIAL BRAIN CALCIFICATION DUE TO SLC2OA2 MUTATIONS: A CASE SERIES"
<p>Sanger sequences (.abi files) of all patients of our Fondazione Besta Cohort.</p>
Towards an animal economics spectrum for ecosystem research
<p>The framework of the plant economics spectrum advanced our understanding of plant ecology and proved as a unifying concept across plant taxonomy, growth forms and biomes. Similar approaches for animals mostly focus on linking life-history and metabolic theory, but not on their application in ecosystem research. To fill this gap, we propose the animal economics spectrum (AES) based on broadly available traits that describe organismal size, biological times and rates.</p> <p>To exemplify the feasibility and general usefulness of constructing the AES, we compiled data on adult and offspring body mass, life span, age at first reproduction, reproductive and metabolic rate of 98 terrestrial taxa from seven selected animal classes and mapped these taxa into an exemplary quantitative trait space.</p> <p>The AES consists of two principal axes related to reproductive strategies and the pace of life; both axes are linked by animal metabolism. The AES thus closely mirrors seminal ideas on fundamental life-history strategies and more recent discoveries and developments in the fields of life-history and metabolic theory. Furthermore, we find associations between the positions of animals within the AES and taxonomy, thermoregulation and body plan.</p> <p>The AES shows that key dimensions describing different ecological strategies of animals can be depicted with functional traits that are relatively easily accessible for a broad spectrum of animal taxa. We suggest future steps towards an application of the AES in ecosystem research aiming at the understanding of ecological processes and ecosystem functions. Additionally, we urge for databases that compile comparable functional traits for a large proportion of animals but also for further groups of organisms with the ultimate goal to map the economics spectrum of life.</p> <p>The framework of the AES will be relevant for understanding ecological processes across animal taxa at species, community and ecosystem level. We further discuss how it can facilitate predictions on how the functional composition and diversity of animal communities can be affected by global change.</p>
Temporal Evolution Feature on Spectrum and Temperature of Lightning return stroke Channel
<p>Temperature is one of the crucial parameters reflecting the energy and current transfer characteristics in the lightning discharge channel. According to the spectra of eight lightning return strokes recorded simultaneously by two high-speed slitless spectrographs with different time resolutions, the spectral-structure and temperature evolution of the return stroke channels over time was quantitatively analyzed. Different from the previous report, one of the spectrographs have recorded the ionic lines in the spectra within approximately 200 microseconds during the return stroke. The ionic line intensity decayed rapidly with time as the current declined, while the atomic line intensity decreased more slowly. The spectral-structure evolution characteristics indicate that the ionic lines in the spectra existed throughout the discharge current process (including the continuing current (CC) stage). Additionally, it further suggests that the ionic line intensities are associated with the discharge currents and that their radiation mechanism is closely related to the collision excitation under the action of strong currents. The temperature calculated by the ionic lines can reflect the thermodynamic properties of the current-carrying channel. The temperature calculated using atomic lines is significantly lower than that calculated by the ionic lines in the same spectrum. The radiation mechanism of the atomic lines differs from that of the ionic lines. Compared with the decay of the ionic-line intensity, the decline of the channel temperature calculated by ionic lines is slower. The temperature calculated by atomic lines shown the similar feature, and it is even basically unchanged in the CC stage. This property reflects the persistent heating effect of the current.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.