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445 results for “data constraint”

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dryad32/100

Data from: Architectural constraints, male fertility variation and biased floral morph ratios in tristylous populations

Tristyly is a genetic polymorphism in which populations are comprised of three floral morphs (mating types) differing reciprocally in sex-organ height. Intermorph (disassortative) mating governed by a trimorphic incompatibility system should result in 1:1:1 morph ratio at equilibrium, but both deterministic and stochastic processes can cause skewed morph ratios in tristylous populations. Here, we investigate mechanisms causing morph-ratio bias in Pontederia parviflora, an emergent aquatic native to tropical America. We compared reproductive traits among morphs and surveyed 71 populations to determine patterns of morph-ratio bias. We then used simulation models of morph-frequency dynamics to test the hypothesis that morph-specific differences in pollen production and their influence on male fertility can explain patterns of morph-ratio bias. Ninety-seven percent of populations that we sampled were tristylous, but with a significant excess of the short-styled morph and a deficiency of the long-styled morph. Atypically for a tristylous species, mid-level anthers of the short-styled morph produced over twice as much pollen compared with the corresponding anthers of the long-styled morph. Our computer models incorporating this difference in male fertility resulted in morph ratios not significantly different from the average frequencies from our survey suggesting that the short-styled morph is more successful than the long-styled morphs in siring ovules of the mid-styled morph. We propose that the difference in male fertility between morphs may be a non-adaptive consequence of a developmental constraint caused by the architecture of tristyly in Pontederiaceae.

opencc-zeroMay 2019View details →
dryad32/100

Data from: Acoustic identification of Mexican bats based on taxonomic and ecological constraints on call design

Monitoring global biodiversity is critical for understanding responses to anthropogenic change, but biodiversity monitoring is often biased away from tropical, megadiverse areas that are experiencing more rapid environmental change. Acoustic surveys are increasingly used to monitor biodiversity change, especially for bats as they are important indicator species and most use sound to detect, localise and classify objects. However, using bat acoustic surveys for monitoring poses several challenges, particularly in megadiverse regions. Many species lack reference recordings, some species have high call similarity or differ in call detectability, and quantitative classification tools, such as machine learning algorithms, have rarely been applied to data from these areas. Here, we collate a reference call library for bat species that occur in a megadiverse country, Mexico. We use 4685 search-phase calls from 1378 individual sequences of 59 bat species to create automatic species identification tools generated by machine learning algorithms (Random Forest). We evaluate the improvement in species-level classification rates gained by using hierarchical classifications, reflecting either taxonomic or ecological constraints (guilds) on call design, and examine how classification rate accuracy changes at different hierarchical levels (family, genus and guild). Species-level classification of calls had a mean accuracy of 66%, and the use of hierarchies improved mean species-level classification accuracy by up to 6% (species within families 72%, species within genera 71·2% and species within guilds 69·1%). Classification accuracy to family, genus and guild-level was 91·7%, 77·8% and 82·5%, respectively. The bioacoustic identification tools we have developed are accurate for rapid biodiversity assessments in a megadiverse region and can also be used effectively to classify species at broader taxonomic or ecological levels. This flexibility increases their usefulness when there are incomplete species reference recordings and also offers the opportunity to characterise and track changes in bat community structure. Our results show that bat bioacoustic surveys in megadiverse countries have more potential than previously thought to monitor biodiversity changes and can be used to direct further developments of bioacoustic monitoring programs in Mexico.

opencc-zeroDec 2015View details →
dryad32/100

Data from: Appearance before performance? Nutritional constraints on life-history traits, but not warning signal expression in aposematic moths

1. Trade-offs have been shown to play an important role in the divergence of mating strategies and sexual ornamentation, but their importance in explaining warning signal diversity has received less attention. In aposematic organisms, allocation costs of producing the conspicuous warning signal pigmentation under nutritional stress could potentially trade-off with life-history traits and maintain variation in warning colouration. 2. We studied this with an aposematic herbivore Arctia plantaginis (Arctiidae), whose larvae and adults show extensive variation in aposematic colouration. In larvae, less melanic colouration (i.e. larger orange patterns) produces a more efficient warning signal against predators, whereas high amounts of melanism (smaller orange pattern) enhance thermoregulation, correlate with better immunity and make individuals harder to detect for naïve predators. 3. We conducted a factorial rearing experiment with larvae originating from lines selected for either small or large orange signal size, which were reared on an artificial diet that had either low or high protein content. Protein content of the diet is critical for melanin production. We measured the effects of diet on individual colouration, life-history traits, immune defence and reproductive output. We also compared the responses to dietary conditions between the small and large larval signal genotypes. 4. Protein content of the diet did not affect warning colouration in the larval stage, but larval signal sizes differed significantly among selection lines, confirming that its variation is mainly genetically determined. In adults, signal line or diet did not affect colouration in hindwings, but males' forewings had more melanin on the high than on low protein diet. Contrary to colouration, diet quality had a stronger impact on life-history traits: individuals developed for longer, had smaller hindwing sizes in females and lower immune defence on the low protein content diet compared to the high. These costs were higher for more melanic larval signal genotypes in terms of development time and female hindwing size. 5. We conclude that low plasticity in warning signal characteristics makes signal expression robust under varying dietary conditions. Therefore, variation in diet quality is not likely to constrain signal expression, but can have a bigger impact on performance.

opencc-zeroDec 2019View details →
dryad32/100

Data from: Oncogene inference optimization using constraint-based modelling incorporated with protein expression in normal and tumour tissues

Cancer cells are known to exhibit unusual metabolic activity and yet, few metabolic cancer driver genes are known. Genetic alterations and epigenetic modi cations of cancer cells result in the abnormal regulation of cellular metabolic pathways that are different when compared to normal cells. Such a metabolic reprogramming can be simulated using constraint-based modelling approaches towards predicting oncogenes. We introduced the tri-level optimization problem to use the metabolic reprogramming towards inferring oncogenes. The algorithm incorporated Recon 2.2 network with the Human Protein Atlas to reconstruct genome-scale metabolic network models of the tissue-speci fic cells at normal and cancer states, respectively. Such reconstructed models were applied to build the templates of the metabolic reprogramming between normal and cancer cell metabolism. The inference optimization problem was formulated to use the templates as a measure towards predicting oncogenes. The nested hybrid differential evolution algorithm was applied to solve the problem to overcome solving difficulty for transferring the inner optimization problem into the single one. Head and neck squamous cells were applied as a case study to evaluate the algorithm. We detected 13 of the top ranked one-hit dysregulations and 17 of the top ranked two-hit oncogenes with high similarity ratios to the templates. According literature survey, most inferred oncogenes are consistent with the observation in various tissues. Furthermore, the inferred oncogenes were highly connected with the TP53/AKT/IGF/MTOR signalling pathway through PTEN, which is one of the most frequently detected tumour suppressor genes in human cancer.

opencc-zeroMar 2020View details →
dryad32/100

Data from: Environmental constraints on size-dependent signaling affects mating and rival interactions

Advertisement signals can convey information about a sender's characteristics, such as body size. The reliability of signals, however, can be reduced when signal production is partially dependent on the environment. Here we show that display site properties can affect signal production and consequently signal attractiveness in a size-dependent manner. We recorded male túngara frogs (Physalaemus pustulosus) while manipulating water levels in order to constrain calling. We found that water level affected male call properties in a size-dependent manner, with call amplitude being less affected in smaller males when forced to call in shallow water. Next, we tested how size-dependent and display site-dependent signaling affected female choice and rival competition. Both males and females showed the strongest response to the call of a large male when he was calling at the deepest water levels. However, females showed no preference for large over small males when both were recorded in shallow water levels, or, depending on the call rate and timing of calls, even preferred small males. Likewise, males responded equally to large and small rivals recorded calling during shallow water level trials. Our experiments show that display site properties can influence signal production and attractiveness in a size-dependent manner. These results can have important consequences for the evolution of signaling, as small males may be able to use their size to their advantage when selecting appropriate display sites and thereby outcompete large males.

opencc-zeroDec 2017View details →
dryad32/100

Data from: Migratory constraints on yolk precursors limit yolk androgen deposition and underlie a brood reduction strategy in rockhopper penguins

Hormonally mediated maternal effects link maternal phenotype and environmental conditions to offspring phenotype. The production of lipid-rich maternal yolk precursors may provide a mechanism by which lipophilic steroid hormones can be transported to developing yolks, thus predicting a positive correlation between yolk precursors in mothers and androgen levels in eggs. Using rockhopper penguins (Eudyptes chrysocome), which produce a two-egg clutch characterized by extreme egg-size dimorphism, reversed hatching asynchrony and brood-reduction, we examined correlations between circulating concentrations of the primary yolk-precursor vitellogenin (VTG) and levels of yolk androgens. Previous work in Eudyptes penguins has shown that egg-size dimorphism is the product of migratory constraints on yolk precursor production. We predicted that if yolk precursors are constrained, androgen transport to developing yolks would be similarly constrained. We reveal positive linear relationships between maternal VTG and androgens in small A-eggs but not larger B-eggs, which is consistent with a migratory constraint operating on the A-egg. Results suggest that intra-clutch variation in total yolk androgen levels depends on the production and uptake of yolk precursors. The brood reduction strategy common to Eudyptes might thus be best described as the result of a migratory constraint.

opencc-zeroDec 2012View details →
dryad32/100

Data from: Low recruitment due to altered settlement substrata as primary constraint for coral communities under ocean acidification

The future of coral reefs under increasing CO2 depends on their capacity to recover from disturbances. To predict the recovery potential of coral communities that are fully acclimatized to elevated CO2, we compared the relative success of coral recruitment and later life stages at two volcanic CO2 seeps and adjacent control sites in Papua New Guinea. Our field experiments showed that the effects of ocean acidification (OA) on coral recruitment rates were up to an order of magnitude greater than the effects on the survival and growth of established corals. Settlement rates, recruit and juvenile densities were best predicted by the presence of crustose coralline algae, as opposed to the direct effects of seawater CO2. Offspring from high CO2 acclimatized parents had similarly impaired settlement rates as offspring from control parents. For most coral taxa, field data showed no evidence of cumulative and compounding detrimental effects of high CO2 on successive life stages, and three taxa showed improved adult performance at high CO2 that compensated for their low recruitment rates. Our data suggest that severely declining capacity for reefs to recover, due to altered settlement substrata and reduced coral recruitment, is likely to become a dominant mechanism of how OA will alter coral reefs.

opencc-zeroDec 2016View details →
dryad32/100

Data from: Range size heritability in Carnivora is driven by geographic constraints

Range size heritability refers to an intriguing pattern where closely related species occupy geographic ranges of similar extent. Its existence may indicate selection on traits only emergent at the species level, with interesting consequences for evolutionary processes. We explore whether range size heritability may be attributable to the fact that range size is largely driven by the size of geographic domains (i.e. continents, biomes, areas given by species' climatic tolerance) which tend to be similar in phylogenetically related species. Using a well resolved phylogeny of carnivorans, we show that range sizes are indeed constrained by geographic domains and that the phylogenetic signal in range sizes diminishes if the domain sizes are accounted for. Moreover, detailed delimitation of species' geographic domain leads to a weaker signal in range size heritability, indicating the importance of definition of the null model against which the pattern is tested. Our findings do not reject the hypothesis of range size heritability, but rather unravel its underlying mechanisms. Additional analyses imply that evolutionary conservatism in niche breadth delimits the species' geographic domain, which in turn shapes the species' range size. Range size heritability patterns thus emerge as a consequence of this interplay between evolutionary and geographic constraints.

opencc-zeroDec 2010View details →
dryad32/100

Data from: Constraints on geographic variation in fiddler crabs (Ocypodidae: Uca) from the western Atlantic

A key question in evolutionary biology is how intraspecific variation biases the evolution of a population and its divergence from other populations. Such constraints potentially limit the extent to which populations respond to selection, but may endure long enough to have macroevolutionary consequences. Previous studies have focused on the association between covariation patterns and divergence among isolated populations. Few have focused on geographic variation among semi-connected populations, however, even though this may be indicative of early selective pressures that could lead to long-term divergence and speciation. Here, we test whether covariation in the shape of the carapace of fiddler crabs (genus Uca Leach, 1814) is important for structuring geographic variation. We find that morphological divergence among populations is associated with evolvability in the direction of divergence in only a few species. The shape of the ancestral covariation matrix in these species differs from other species in having notably more variation concentrated along fewer directions (i.e., higher eccentricity). For most species, there is some evidence that covariation has constrained the range of directions into which populations have diverged but not the degree of divergence. These results suggest that even though fiddler crab populations have diverged morphologically in directions predicted by covariation, constraints on the extent to which divergence has occurred may only be manifested in species where variation patterns are eccentric enough to limit populations' ability to respond effectively in many directions.

opencc-zeroDec 2015View details →
dryad32/100

Data from: When do trade-offs occur? The roles of energy constraints and trait flexibility in a bushcricket

In many animal species, the expression of sexually-selected traits is negatively correlated with survival traits such as immune function, a relationship termed a 'trade-off'. But an alternative in which sexually-selected traits are positively correlated with survival traits is also widespread. The nature of inter-trait relationships may be largely determined by overall energy expenditure, energy availability, and trait flexibility, with trade-offs expected when individuals are subject to energy constraints. We tested this hypothesis in Ephippiger diurnus, a European bushcricket in which males are distinguished by two prominent sexually-selected traits, acoustic calls and a large spermatophore transferred to the female at mating, and where immune function may be critical in survival. E. diurnus are distributed as small, isolated populations that are differentiated genetically and behaviorally. We analyzed songs, spermatophores, and the immune function in male individuals from eight populations spanning a range of song types. As predicted, we only found trade-offs in those populations that expended more energy on song and were less flexible in their ability to adjust that expenditure. Ultimately, energy constraints and resulting trade-offs may limit the evolution of song exaggeration in E. diurnus populations broadcasting long calls comprised of multiple 'syllables'.

opencc-zeroDec 2016View details →
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Data from: Angiosperm fleshy fruits and seed dispersers: a comparative analysis of adaptation and constraints in plant-animal interactions

Variation in phenotypic traits of angiosperm fleshy fruits has been explained as the result of adaptations to their mutualistic seed dispersers. By analyzing the information available on fleshy fruit characteristics of 910 angiosperm species, I assess the hypothesis of evolutionary association between fruit phenotypic traits and type of seed disperser (birds, mammals, and mixed dispersers) and address explicitly and quantitatively alternative null hypotheses about phylogenetic effects. Phylogenetic affinity among plant taxa is accounted for by comparative methods including nested ANOVA, phylogenetic autocorrelation, and independent contrasts. Averaging over the 16 fruit traits examined, phylogenetic effects down to genus level explain 61% of total variance. Phylogenetic autocorrelations are strong among close relatives, reaching significance for 11 of the 16 fruit traits examined. When assessed by independent contrast methods, correlated evolution between type of disperser and fruit traits is confined to fruit diameter. Differences among dispersal syndromes in other traits vanish after accounting for phylogenetic effects. These analyses reveal that seed dispersal syndromes are not entirely interpretable as current adaptations to seed dispersers. Their status as exaptations can be assessed by combining experimental studies of natural selection on fruit size and rigorous comparative and cladistic tests of adaptational hypotheses.

opencc-zeroDec 2012View details →
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Data from: Causes and consequences of failed adaptation to biological invasions: the role of ecological constraints

Biological invasions are a major challenge to native communities and have the potential to exert strong selection on native populations. As a result, native taxa may adapt to the presence of invaders through increased competitive ability, increased antipredator defences or altered morphologies that may limit encounters with toxic prey. Yet, in some cases, species may fail to adapt to biological invasions. Many challenges to adaptation arise because biological invasions occur in complex species-rich communities in spatially and temporally variable environments. Here, we review these 'ecological' constraints on adaptation, focusing on the complications that arise from the need to simultaneously adapt to multiple biotic agents and from temporal and spatial variation in both selection and demography. Throughout, we illustrate cases where these constraints might be especially important in native populations faced with biological invasions. Our goal was to highlight additional complexities empiricists should consider when studying adaptation to biological invasions and to begin to identify conditions when adaptation may fail to be an effective response to invasion.

opencc-zeroDec 2014View details →
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Data from: Adaptation and constraint in the evolution of the mammalian backbone

Background: The axial skeleton consists of repeating units (vertebrae) that are integrated through their development and evolution. Unlike most tetrapods, vertebrae in the mammalian trunk are subdivided into distinct thoracic and lumbar modules, resulting in a system that is constrained in terms of count but highly variable in morphology. This study asks how thoracolumbar regionalization has impacted adaptation and evolvability across mammals. Using geometric morphometrics, we examine evolutionary patterns in five vertebral positions from diverse mammal species encompassing a broad range of locomotor ecologies. We quantitatively compare the effects of phylogenetic and allometric constraints, and ecological adaptation between regions, and examine their impact on evolvability (disparity and evolutionary rate) of serially-homologous vertebrae. Results: Although phylogenetic signal and allometry are evident throughout the trunk, the effect of locomotor ecology is partitioned between vertebral positions. Lumbar vertebral shape correlates most strongly with ecology, differentiating taxa based on their use of asymmetric gaits. Similarly, disparity and evolutionary rates are also elevated posteriorly, indicating a link between the lumbar region, locomotor adaptation, and evolvability. Conclusion: Vertebral regionalization in mammals has facilitated rapid evolution of the posterior trunk in response to selection for locomotion and static body support.

opencc-zeroDec 2017View details →
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Data from: Abiotic constraints on the activity of tropical lizards

Many tropical ectotherms are considered vulnerable to anthropogenic climate change because they have evolved to become thermal specialists. Indeed, several recent studies have suggested that even small increases in mean operative temperature may lead to a reduction in activity and the subsequent extinction of populations. Within the tropics, lizards are considered particularly vulnerable due to the potential for climate change to directly impact physiology and alter community interactions. However, models usually focus on the effects of mean operative temperature at the expense of other climate variables that may also affect lizard physiology. We used daily variation in operative temperature, humidity, and wind speed to examine how changes in climate influence activity in two species of lizards from the island of Cayo Menor, Honduras. Anolis lemurinus is a forest species, whereas A. allisoni is an open-habitat species. We conducted daily surveys for active lizards in habitat typical to each species, while simultaneously measuring operative thermal environments with physical models. The effects of the thermal environment were considered in the context of the thermal sensitivity of sprint speed for each species, and compared with the effects of the hydric (humidity) and convective (wind) environments. When all surveys were combined into a single analysis, the activity of the forest species Anolis lemurinus was positively correlated with wind speed, the spatial heterogeneity of operative temperature, and the mismatch between mean operative temperature and the optimal temperature for sprint performance. Mean operative temperature did significantly effect Anolis lemurinus activity, but only when it was above their thermal optimum. Activity of the open-habitat species A. allisoni was negatively correlated with wind speed, but was not related to any other climate variable. Whereas the mismatch between mean operative temperature and the thermal optimum for performance predicted the activity level of the forest species in ways partially consistent with its use in models for the response of lizards to climate change, the effects of the abiotic environment were habitat-dependent. Our results suggest that successfully predicting the biological impacts of climate change will require holistic models that account for more than changes in mean temperature alone.

opencc-zeroDec 2013View details →
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Data from: Habitat suitability and the constraints of migration in New World warblers

Identifying the factors that influence geographic range limits can illustrate the various ecological, physiological, and evolutionary constraints imposed on a species. The range limits of migratory birds are particularly challenging to study as they occur in disjunct regions at different times of the year, which can impose different constraints. Travel between breeding and wintering regions poses a significant energetic and navigational challenge to birds, although it is not clear how these movements influence breeding dispersal and range expansion. Here I ask whether the possible costs of migration limit the breeding ranges of wood warblers, a group of birds with an extensive history of ecological and evolutionary studies. I used occurrence records for multiple wood warbler species, breeding primarily in the boreal forest of North America, to generate environmental niche models. I tested for over-prediction of habitat suitability into the western boreal forest, where most these species do not have occurrence records but where there is presumably suitable habitat. I found that these vagile taxa, primarily found east of the Rocky Mountains, also have predicted habitat suitability that extends into the north and west, where they have little to no occurrence records. I discuss several possible explanations for this discordance. In particular, the patterns are consistent with the costs of a long-distance migration limiting the benefits of range expansion, as migration may become too onerous as the distance between breeding and wintering areas increases. These results speak to the process of niche filling more generally and call attention to an under-appreciated explanation for why migratory species may not fully occupy their fundamental niche.

opencc-zeroDec 2016View details →
dryad32/100

Data from: Costs and constraints conspire to produce honest signalling: insights from an ant queen pheromone

Signal costs and evolutionary constraints have both been proposed as ultimate explanations for the ubiquity of honest signalling, but the interface between these two factors is unclear. Here, I propose a pluralistic interpretation, and use game theory to demonstrate that evolutionary constraints determine whether signals evolve to be costly or cheap. Specifically, when the costs or benefits of signalling are strongly influenced by the sender's quality, low-cost signals evolve. The model reaffirms that cheap and costly signals can both be honest, and predicts that expensive signals should have more positive allometric slopes than cheap ones. The new framework is applied to an experimental study of an ant queen pheromone that honestly signals fecundity. Juvenile hormone was found to have opposing, dose-dependent effects on pheromone production and fecundity and was fatal at high doses, indicating that endocrine-mediated trade-offs preclude dishonesty. Several lines of evidence suggest that the realised cost of pheromone production may be non-trivial, and the antagonistic effects of juvenile hormone indicate the presence of significant evolutionary constraints. I conclude that the honesty of queen pheromones and other signals is likely enforced by both the cost of dishonesty and a suite of evolutionary constraints.

opencc-zeroDec 2011View details →
dryad32/100

Data from: Two eggs, two different constraints: a potential explanation for the puzzling intra-clutch egg size dimorphism in Eudyptes penguins

Phenotypic plasticity and phenotypic stability are major components of the adaptive evolution of organisms to environmental variation. The invariant two-egg clutch size of Eudyptes penguins has recently been proposed to be a unique example of a maladaptive phenotypic stability, while their egg mass is a plastic trait. We tested whether this phenotypic plasticity during reproduction might result from constraints imposed by migration (migratory carry-over effect) and breeding (due to the depletion of female body reserves). For the first time, we examined whether these constraints differ between eggs within clutches and between egg components (yolk and albumen). The interval between colony return and clutch initiation positively influenced the yolk mass, the albumen mass, and the subsequent total egg mass of first-laid eggs. This time interval had only a slight negative influence on the yolk mass of second-laid eggs and no influence on their albumen and subsequent total masses. For both eggs, female body mass at laying positively influenced albumen and total egg masses. Female investment into the entire clutch was not related to the time in the colony before laying but increased with female body mass. These novel results suggest that the unique intraclutch egg size dimorphism exhibited in Eudyptes penguins, with first-laid eggs being consistently smaller than second-laid eggs, might be due to a combination of constraints: a migratory carry-over effect on the first-laid egg and a body reserve depletion effect on the second-laid egg. Both these constraints might explain why the timing of reproduction, especially egg formation, is narrow in migratory capital breeders.

opencc-zeroDec 2014View details →
dryad32/100

Data from: Evolution of resistance to a multiple-herbavore community: genetic correlations, diffuse coevolution, and constraints on the plant's response to selection

Although plants are generally attacked by a community of several species of herbivores, relatively little is known about the strength of natural selection for resistance in multiple-herbivore communities—particularly how the strength of selection differs among herbivores that feed on different plant organs or how strongly genetic correlations in resistance affect the evolutionary responses of the plant. Here, we report on a field study measuring natural selection for resistance in a diverse community of herbivores of Solanum carolinense. Using linear phenotypic-selection analyses, we found that directional selection acted to increase resistance to seven species. Selection was strongest to increase resistance to fruit feeders, followed by flower feeders, then leaf feeders. Selection favored a decrease in resistance to a stem borer. Bootstrapping analyses showed that the plant population contained significant genetic variation for each of 14 measured resistance traits and significant covariances in one-third of the pairwise combinations of resistance traits. These genetic covariances reduced the plant's overall predicted evolutionary response for resistance against the herbivore community by about 60%. Diffuse (co)evolution was widespread in this community, and the diffuse interactions had an overwhelmingly constraining (rather than facilitative) effect on the plant's evolution of resistance.

opencc-zeroDec 2012View details →
dryad32/100

Data from: Constraint and opportunity: the genetic basis and evolution of modularity in the cichlid mandible

Modular variation, whereby the relative degree of connectivity varies within a system, is sometimes thought to evolve through natural selection. In this way, modularity may facilitate evolution. Alternatively, conserved patterns of modularity may act to constrain evolution by preventing certain functions from evolving. A comprehensive understanding of the interplay between these phenomena will require knowledge of both the inheritance and genetic basis of modularity. Here we explore these ideas in the cichlid mandible by investigating modularity at the genus, species, and through a new approach, the individual level. Specifically, we assessed patterns of covariation in Lake Malawi cichlid species that employ alternate 'biting' and 'suction-feeding' modes of feeding, and in a hybrid cross between these two ecotypes. Across the suction-feeding genus, patterns of modularity were conserved and reflected function. In contrast, the 'biting' species displayed a pattern of modularity that closely matched developmental modules. The modularity pattern present in our F2 population was similar to the pattern exhibited by our biter, suggesting a role for dominance. We also demonstrated that our individual-level metrics of modularity (IMM) were a valid quantitative traits and used them to map modularity QTL. In all, our findings suggest that modularity is both a constraining and evolvable force in cichlid evolution, with distinct patterns between species and variation among individuals.

opencc-zeroDec 2010View details →
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Data from: A palaeoequatorial Ornithischian and new constraints on early dinosaur diversification

Current characterizations of early dinosaur evolution are incomplete: existing palaeobiological and phylogenetic scenarios are based on a fossil record dominated by saurischians and the implications of the early ornithischian record are often overlooked. Moreover, the timings of deep phylogenetic divergences within Dinosauria are poorly constrained owing to the absence of a rigorous chronostratigraphical framework for key Late Triassic–Early Jurassic localities. A new dinosaur from the earliest Jurassic of the Venezuelan Andes is the first basal ornithischian recovered from terrestrial deposits directly associated with a precise radioisotopic date and the first-named dinosaur from northern South America. It expands the early palaeogeographical range of Ornithischia to palaeoequatorial regions, an area sometimes thought to be devoid of early dinosaur taxa, and offers insights into early dinosaur growth rates, the evolution of sociality and the rapid tempo of the global dinosaur radiation following the end-Triassic mass extinction, helping to underscore the importance of the ornithischian record in broad-scale discussions of early dinosaur history.

opencc-zeroDec 2013View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record