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Dataset results
181 results for “de novo assembly”
Data from: De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin
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De novo assembly and transcriptome analysis of two different starch content Ipomoea batatas cultivars
GEO Series GSE101303. Ipomoea batatas. 18 samples. Type: Expression profiling by high throughput sequencing.
De novo assembly of Aedes aegypti using Hi-C yields chromosome-length scaffolds
GEO Series GSE95797. Aedes aegypti; Culex quinquefasciatus; Homo sapiens. 3 samples. Type: Other; Third-party reanalysis.
Oncofusion driven de novo enhancer assembly promotes malignancy in Ewing sarcoma via aberrant expression of the stereociliary protein LOXHD1 [enhancer knockdown]
GEO Series GSE163334. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
De novo Assembly and Delivery of Synthetic Megabase-Scale Human DNA into Mouse Early Embryos
GEO Series GSE250094. Saccharomyces cerevisiae; Mus musculus. 38 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other.
De novo genome assembly of faba bean (Vicia faba L.) leaf transcriptome provide novel insights into the drought stress tolerance mechanisms
GEO Series GSE292422. Vicia faba. 6 samples. Type: Expression profiling by high throughput sequencing.
De novo transcriptome assembly and comparative analysis elucidate complicated mechanism regulating Astragalus chrysochlorus response to selenium stimuli
GEO Series GSE71097. Astragalus chrysochlorus. 2 samples. Type: Expression profiling by high throughput sequencing.
Oncofusion driven de novo enhancer assembly promotes malignancy in Ewing sarcoma via aberrant expression of the stereociliary protein LOXHD1 [ChIP-seq]
GEO Series GSE163332. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Oncofusion driven de novo enhancer assembly promotes malignancy in Ewing sarcoma via aberrant expression of the stereociliary protein LOXHD1
GEO Series GSE163335. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Class A capsid assembly modulator apoptotic elimination of hepatocytes with high HBV core antigen level in vivo is dependent on de novo core protein translation
GEO Series GSE246563. Mus musculus. 92 samples. Type: Expression profiling by array.
A gene expression microarray for Nicotiana benthamiana based on de novo transcriptome sequence assembly
GEO Series GSE76631. Nicotiana benthamiana. 4 samples. Type: Expression profiling by array.
Digital Gene Expression Analysis Based on Integrated De Novo Transcriptome Assembly of Sweet Potato [Ipomoea batatas (L.) Lam.]
GEO Series GSE35929. Ipomoea batatas. 7 samples. Type: Expression profiling by high throughput sequencing.
De Novo Assembly of Plasmodium knowlesi Genomes From Clinical Samples Explains the Counterintuitive Intrachromosomal Organization of Variant SICAvar and kir Multiple Gene Family Members
<p>Published DOI: <a href="https://doi.org/10.3389/fgene.2022.855052">https://doi.org/10.3389/fgene.2022.855052</a></p> <p>Supporting data for the attached publication. De Novo assembled genomes of <em>Plasmodium knowlesi</em> generated using Nanopore long reads. Supporting statistical results are included. Variant call files from structural variant calls are attached for each genome. Additionally, statistical results from BUSCO, QUAST, Pomoxis and AGAT are included. Annotation files in GFF3 format including further analyses of these annotation files are attached. Scripts for post analysis are attached with scripts for data generation presented on Github repository: "Pknowlesi_denovo_genome_assembly"</p>
De novo assembly of macaque gene models
GEO Series GSE158668. Macaca mulatta; Mus musculus. 14 samples. Type: Expression profiling by high throughput sequencing.
A global comparative analysis of gene expression in ovules and leaves based on integrated De Novo transcriptome assembly of Ginkgo biloba L.
GEO Series GSE64502. Ginkgo biloba. 2 samples. Type: Expression profiling by high throughput sequencing.
De novo transcriptome assembly based RNA-Seq and dynamic expression of key enzyme genes in baicalin biosynthetic pathway of Scutellaria baicalensis Georgi
GEO Series GSE132061. Scutellaria baicalensis. 1 samples. Type: Expression profiling by high throughput sequencing.
De novo transcriptome assembly databases in the butterfly orchid Phalaenopsis equestris
GEO Series GSE70411. Phalaenopsis equestris. 4 samples. Type: Expression profiling by high throughput sequencing.
De novo transcriptome assembly for desiccation tolerance in intertidal seaweed species Ulva lactuca
GEO Series GSE97868. Ulva lactuca. 4 samples. Type: Expression profiling by high throughput sequencing.
De novo assembly and transcriptome analysis of Litopenaeus vannamei gill response to different salinity cultivated conditions
GEO Series GSE64596. Penaeus vannamei. 6 samples. Type: Expression profiling by high throughput sequencing.
De novo transcriptome assembly and functional annotation for Y-organs of the blue crab (Callinectes sapidus), and analysis of differentially expressed genes during pre-molt
GEO Series GSE154560. Callinectes sapidus. 4 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.