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247
datasets available to search
ShareScore release 0.9.0
Dataset results
247 results for “envelope”
LuxR402 of Novosphingobium sp. HR1a regulates the correct configuration of cell envelopes
GEO Series GSE223267. Novosphingobium sp. HR1a. 4 samples. Type: Expression profiling by high throughput sequencing.
Aminoglycoside heteroresistance in Enterobacter cloacae is driven by the cell envelope stress response.
GEO Series GSE236124. Enterobacter cloacae subsp. cloacae ATCC 13047. 9 samples. Type: Expression profiling by high throughput sequencing.
A unique mode of cross regulation in a cell envelope stress signaling system [ChIP-seq]
GEO Series GSE229120. Brucella ovis. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The HCV Envelope Glycoprotein Down-Modulates NF-κB Signalling and Associates with Stimulation of the Host Endoplasmic Reticulum Stress Pathway
GEO Series GSE163239. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
Hmga2 protein loss alters nuclear envelope and affects 3D chromatin structure upon the induction of pluripotent stem cell commitment [ChIP-seq]
GEO Series GSE200671. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
In vivo gene editing of human hematopoietic stem and progenitor cells using envelope-engineered virus-like particles (PHH cells)
GEO Series GSE267282. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Global gene expression analysis of enveloping layer (EVL) and non-EVL cells from 6 hpf zebrafish embryos
GEO Series GSE143734. Danio rerio. 6 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide transcriptional profiling of the cell envelope stress response of Listeria monocytogenes
GEO Series GSE32913. Listeria monocytogenes EGD-e; Listeria monocytogenes. 16 samples. Type: Expression profiling by array.
Late cornified envelope 1C (LCE1C) gene is a transcriptional target of TAp63.
GEO Series GSE94635. Homo sapiens. 4 samples. Type: Expression profiling by array.
Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin cardiomyopathy mice [SLAM-IT-seq]
GEO Series GSE241589. Mus musculus. 21 samples. Type: Other.
SEMA3B switches axon-axon to axon-glia interactions required for unmyelinated axon envelopment and integrity
GEO Series GSE294160. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Hmga2 protein loss alters nuclear envelope and affects 3D chromatin structure upon the induction of pluripotent stem cell commitment [RNA-seq]
GEO Series GSE200691. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
The cell envelope stress response mediated by the LiaFSRLm three-component system of Listeria monocytogenes is controlled via the phosphatase activity of the bifunctional histidine kinase LiaSLm
GEO Series GSE24107. Listeria monocytogenes EGD-e; Listeria monocytogenes. 11 samples. Type: Expression profiling by array.
Brr6 Plays a Role in Gene Recruitment and Transcriptional Regulation at the Nuclear envelope
GEO Series GSE113746. Saccharomyces cerevisiae. 17 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Regulation of flagellum biosynthesis in response to cell envelope stress in Salmonella Typhimurium
GEO Series GSE87447. Salmonella enterica subsp. enterica serovar Typhimurium str. LT2. 8 samples. Type: Expression profiling by high throughput sequencing.
Accumulation of progerin affects the symmetry of cell division and is associated with impaired Wnt signaling and the mislocalization of nuclear envelope proteins [RNA-Seq]
GEO Series GSE131104. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
Hmga2 protein loss alters nuclear envelope and affects 3D chromatin structure upon the induction of pluripotent stem cell commitment
GEO Series GSE200673. Mus musculus. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
The nuclear envelope protein Net39 is essential for nuclear integrity, chromatin organization, and muscle growth (RNA-Seq)
GEO Series GSE154849. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Loss of ER and nuclear envelope-associated neutral sphingomyelinase SMPD4 causes a severe neurodevelopmental disorder with microcephaly and congenital arthrogryposis
GEO Series GSE133264. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
HeLa cell images with four labels (nuclear envelope, nucleus, rest of the cell, and background) for deep learning architecture training.
<p>This is a data set that contains <strong>labeled HeLa cell images</strong>, generated in MATLAB® Image Labeler, indicating the four different classes - nuclear envelope, nucleus, rest of the cell, and background for <strong>deep learning</strong> architecture training. </p> <p>Details of the imaging and preparation have been published in:</p> <ul> <li>Cefa Karabağ, Martin L. Jones, Christopher J. Peddie, Anne E. Weston, Lucy M. Collinson, Constantino Carlos Reyes-Aldasoro. Segmentation and Modelling of the Nuclear Envelope of HeLa Cells Imaged with Serial Block Face Scanning Electron Microscopy. <em>J. Imaging</em> 2019, <em>5</em>(9), 75; <a href="https://doi.org/10.3390/jimaging5090075">https://doi.org/10.3390/jimaging5090075</a></li> </ul> <p>and</p> <ul> <li>The data sets are freely available through EMPIAR: http://dx.doi.org/10.6019/EMPIAR-10094 EMPIAR.</li> </ul> <p> </p> <p>Details on the segmentation and analysis of HeLa cells have been published in:</p> <ul> <li>Cefa Karabağ, Martin L. Jones, Christopher J. Peddie, Anne E. Weston, Lucy M. Collinson, Constantino Carlos Reyes-Aldasoro. Semantic Segmentation of HeLa Cells: An Objective Comparison between one Traditional Algorithm and Three Deep-Learning Architectures, BioRxiv, https://doi.org/10.1101/2020.03.05.978478</li> </ul> <p>and</p> <ul> <li> <p>Cefa Karabağ, Martin L. Jones, Christopher J. Peddie, Anne E. Weston, Lucy M. Collinson, Constantino Carlos Reyes-Aldasoro. Segmentation and Modelling of the Nuclear Envelope of HeLa Cells Imaged with Serial Block Face Scanning Electron Microscopy. <em>J. Imaging</em> 2019, <em>5</em>(9), 75; <a href="https://doi.org/10.3390/jimaging5090075">https://doi.org/10.3390/jimaging5090075</a></p> </li> </ul> <p> </p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.