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ShareScore release 0.9.0
Dataset results
160 results for “introgressive hybridization”
Data from: Multiple hybridization events between Drosophila simulans and Drosophila mauritiana are supported by mtDNA introgression
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Data from: Genetic drift or natural selection? Hybridization and asymmetric mitochondrial introgression in two Caribbean lizards (Anolis pulchellus and Anolis krugi)
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Genome assembly of a commercial tomato hybrid (Funtelle) for haplotyping an introgression that confers TMV resistance
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Data from: Parallel plumage color evolution and introgressive hybridization in wheatears
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Data from: Hybridization and introgression in two ecologically dissimilar Fundulus hybrid zones
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Data from: Detecting and quantifying introgression in hybridized populations: simplifying assumptions yield overconfidence and uncertainty
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Data from: Species introduction promotes hybridization and introgression in Coregonus: is there sign of selection against hybrids?
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Data from: Spontaneous hybridization and introgression between walleye (Sander vitreus) and sauger (S. canadensis) in two large reservoirs: insights from genotyping-by-sequencing
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Data from: Differential introgression and the maintenance of species boundaries in an advanced generation avian hybrid zone
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Restricted X chromosome introgression and support for Haldane’s rule in hybridizing damselflies
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Data from: Phylogenetic relationships of toads of the Rhinella granulosa group (Anura: Bufonidae): a molecular perspective with comments on hybridization and introgression
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Data from: Pervasive introgression of MHC genes in newt hybrid zones
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Data from: Hybrid incompatibilities, local adaptation, and the genomic distribution of natural introgression between species
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Data from: Genotyping-in-Thousands by Sequencing panel development and application for high-resolution monitoring of introgressive hybridization within sockeye salmon
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Evolutionary impacts of introgressive hybridization in a rapidly evolving group of jumping spiders (F. Salticidae, Habronattus americanus group)
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Gene expression analysis in Drosophila introgression hybrids
GEO Series GSE44329. Drosophila melanogaster; Drosophila simulans; Drosophila mauritiana. 64 samples. Type: Expression profiling by array.
The spatial signature of introgression after a biological invasion with hybridization
<p><strong>Simulated Data and Custom Scripts</strong></p> <p>This repository contains data for performing simulations with SPLATCHE3 and the custom R scripts used in the following manuscript: Quilodrán CS, Tsoupas A and M Currat. 2020. The spatial signature of introgression after a biological invasion with hybridization. Frontiers in Ecology and Evolution.</p> <p>There are three main folders (.zip files): </p> <ul> <li>Settings: the setting files of SPLATCHE3 used in all explored scenarios. The example folder for each scenario (01_newset) contains the setting file and setting folder needed to run SPLATCHE3. This example folder contains a single simulation of the interbreeding rate (MigrRate_P1_to_P2 and MigrRate_P2_to_P1) that generates an output of 10,000 simulated loci. The folder also contains a public version of SPLATCHE3 for Linux. The software version for other platforms (Mac OS X and Windows) can be obtained from “http://www.splatche.com/splatche3".</li> <li>Results: all results obtained in the different scenarios. The three simulations in a square world are presented for the invasive (NC files) and local organisms (NCbis). The neanderthal scenario presents the simulated proportion of introgression in modern humans sampled in France and China. </li> <li>Rcustom: custom R functions and files used for plotting the results. </li> </ul> <p>There are also four R scripts for plotting all main figures in the manuscript. </p> <p><strong>Acknowledgments </strong><br> This study was financed by grants from the Swiss National Science Foundation n° 31003A_182577 to MC and P400PB_183930 to CSQ. All computations were performed using the High-Performance Computing (HPC) cluster at baobab.unige.ch</p>
Secondary contact, introgressive hybridization and genome stabilization in sticklebacks
<p>Variant data in vcf format and SNPEFF annotation related files for the manuscript "Secondary contact, introgressive hybridization and genome stabilization in sticklebacks".</p>
Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression
GEO Series GSE18060. Saccharomyces bayanus; Saccharomyces cerevisiae. 12 samples. Type: Genome variation profiling by array.
Hybrid lizards with introgressed mtDNA show resistance to DNA damage from Reactive Oxygen Species
GEO Series GSE255990. Urosaurus ornatus; Urosaurus graciosus. 18 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.