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325 results for “molecular phylogenetic analysis”
FIGURE 5 in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico
FIGURE 5. Haematoloechus caballeroi (Skrjabin & Antipin, 1962), from the Tlaloc´s leopard frog, Rana tlaloci Hillis & Frost (Ranidae), from Xochimilco, Mexico. Male terminal genitalia; female proximal genialia. Ventral view; AU = ascending uterus, DU = descending uterus, GP = genital pore, ED = ejaculatory duct, MG = Mehlis gland, OS = oral sucker, OV = ovary, PH = pharynx, SR = seminal receptacle, SV = seminal vesicle, VD = vitelline ducts, VS = ventral sucker. Scale bar = 0.5 mm.
FIGURE 2 in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico
FIGURE 2. One of 829 most parsimonious phylogenetic trees (consistency index = 0.625) of available 28S sequences for species in the genus Haematoloechus. Majority-rule consensus values above branches; bootstrap values below branches; *originally recorded as H. coloradensis by León-Règagnon & Brooks (2003); †originally recorded as H. cf. complexus León- Règagnon & Brooks (2003); §originally recorded as H. varioplexus by León-Règagnon et al. (2005); I = Clade I, H. longiplexus & relatives; II = Clade II, H. complexus & relatives; III = H. medioplexus & relatives.
FIGURE 6. Haematoloechus occidentalis n in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico
FIGURE 6. Haematoloechus occidentalis n. sp., from Rana sp., from Colima, México. Ventral view; AU = ascending uterus, DU = descending uterus, GP = genital pore, IC = intestinal ceca, OS = oral sucker, OV = ovary, PH = pharynx, SR = seminal receptacle, T = testes, VF = vitelline follicles,–= ventral sucker. Scale bar = 1 mm.
FIGURE 12 in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico
FIGURE 12. Geographic distribution and morphological traits that lead to previous taxonomic assignments for species of Haematoloechus mapped on the phylogenetic hypothesis based on COI + 28S sequences. Outgroups: Brachycoelium salamandrae, Glypthelmins brownorumae, Opisthioglyphe ranae & Plagiorchis koreanus.
FIGURE 9. Haematoloechus veracruzanus n in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico
FIGURE 9. Haematoloechus veracruzanus n. sp., from the common marsh frog, Rana vaillanti, from Veracruz, Mexico. Male terminal genitalia; female proximal genialia. Dorsal view; AU = ascending uterus, DU = descending uterus, GP = genital pore, ED = ejaculatory duct, MG = Mehlis gland, OS = oral sucker, OV = ovary, PH = pharynx, SR = seminal receptacle, SV = seminal vesicle, VD = vitelline ducts, VS = ventral sucker. Scale bar = 0.5 mm.
FIGURE 1 in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico
FIGURE 1. One of 4 most parsimonious phylogenetic trees (consistency index = 0.449) of available COI sequences for species in the genus Haematoloechus. Majority-rule consensus values above branches; bootstrap values below branches; *originally recorded as H. coloradensis by León–Règagnon (2010); †originally recorded as H. complexus by León-Règagnon (2010); §originally recorded as H. varioplexus by León-Règagnon et al. (2005); I = Clade I, H. longiplexus & relatives; II = Clade II, H. complexus & relatives; III = H. medioplexus & relatives.
FIGURE 4 in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico
FIGURE 4. Haematoloechus caballeroi Skrjabin & Antipin, 1962, from the Tlaloc´s leopard frog, Rana tlaloci Hillis & Frost (Ranidae), from Xochimilco, Mexico. Ventral view; AU = ascending uterus, DU = descending uterus, GP = genital pore, IC = intestinal ceca, OS = oral sucker, OV = ovary, PH = pharynx, SR = seminal receptacle, T = testes, VF = vitelline follicles, VS = ventral sucker. Scale bar = 1 mm
FIGURE 3 in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico
FIGURE 3. One of 1823 most parsimonious phylogenetic trees (consistency index = 0.546) of the concatenated matrix of available sequences COI + 28S of species of the genus Haematoloechus. Majority-rule consensus values above branches; bootstrap values below branches; *originally recorded as H. coloradensis by León-Règagnon (2010) and León-Règagnon & Brooks (2003); †originally recorded as H. cf. complexus by León-Règagnon (2010) and León-Règagnon & Brooks (2003); §originally recorded as H. varioplexus by Leon–Règagnon et al. (2005); I = Clade I, H. longiplexus & relatives; II = Clade II, H. complexus & relatives; III = H. medioplexus & relatives.
FIGURE 10. Haematoloechus mexicanus n in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico
FIGURE 10. Haematoloechus mexicanus n. sp., from the Montezuma leopard frog, Rana montezumae from Estado de Mexico, Mexico. Ventral view; AU = ascending uterus, DU = descending uterus, GP = genital pore, OS = oral sucker, IC = intestinal ceca, OV = ovary, PH = pharynx, SR = seminal receptacle, T = testes, VF = vitelline follicles, VS = ventral sucker. Scale bar = 1 mm.
FIGURE 11. Haematoloechus mexicanus n in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico
FIGURE 11. Haematoloechus mexicanus n. sp., from the Montezuma leopard frog, Rana montezumae from Estado de Mexico, Mexico. Male terminal genitalia; female proximal genialia. Ventral view; AU = ascending uterus, DU = descending uterus, GP = genital pore, ED = ejaculatory duct, MG = Mehlis gland, OS = oral sucker, OV = ovary, PH = pharynx, SR = seminal receptacle, SV = seminal vesicle, VD = vitelline ducts, VS = ventral sucker. Scale bar = 0.5 mm.
FIGURE 8. Haematoloechus veracruzanus n in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico
FIGURE 8. Haematoloechus veracruzanus n. sp., from the common marsh frog, Rana vaillanti, from Veracruz, Mexico. Ventral view; AU = ascending uterus, DU = descending uterus, GP = genital pore, IC = intestinal ceca, OS = oral sucker, OV = ovary, PH = pharynx, SR = seminal receptacle, T = testes, VF = vitelline follicles, VS = ventral sucker. Scale bar = 1 mm.
FIGURE 7. Haematoloechus occidentalis n in Taxonomic revision of species of Haematoloechus Looss, 1899 (Digenea: Plagiorchioidea), with molecular phylogenetic analysis and the description of three new species from Mexico
FIGURE 7. Haematoloechus occidentalis n. sp., from Rana sp., Colima, México. Male terminal genitalia; female proximal genialia. Ventral view; AU = ascending uterus, DU = descending uterus, GP = genital pore, ED = ejaculatory duct, MG = Mehlis gland, OS = oral sucker, OV = ovary, PH = pharynx, SR = seminal receptacle, SV = seminal vesicle, VD = vitelline ducts, VS = ventral sucker. Scale bar = 0.5 mm.
Fig. 3 in Contribution to the molecular phylogenetic analysis of extant holocephalan fishes (Holocephali, Chimaeriformes)
Fig. 3 Relaxed molecular clock estimates for ages of extant holocephalans; Bayesian inference of phylogeny (using BEAST 1.4.8) with three partitions corresponding to three mitochondrial DNA fragments, 10,000,000 generations, relaxed lognormal clock, tree prior 0 yule process (speciation); horizontal bars indicate credible intervals (95%)
Fig. 2 in Contribution to the molecular phylogenetic analysis of extant holocephalan fishes (Holocephali, Chimaeriformes)
Fig. 2 Molecular phylogeny of the Chimaeriformes; Bayesian inference of phylogeny based on 1,793-bp concatenated sequences of three mitochondrial genes (cytb, 12S rRNA, 16S rRNA) MCMC 7,500,000 generations; node support given for Bayesian rRNA by gene and codon 1-3/ raxML bootstrap/MP bootstrap. (Two stars 0 maximum support all (1.00/100%); one star 0 strong support (BI 01.00/ raxML and MP ≥ 95%). Treebase acc. no.: http://purl.org/ phylo/treebase/phylows/study/ TB2:S12051
FIGURE 1 in Fossil calibration dates for molecular phylogenetic analysis of snakes 1: Serpentes, Alethinophidia, Boidae, Pythonidae
FIGURE 1. Time-calibrated phylogeny of Serpentes based on Pyron et al. (2013) and Reynolds et al. (2014). Numbers represent calibrated nodes in text. Fossil taxa are the calibration points for their respective nodes. Thickened bars represent well-sampled, taxonomically resolved stratigraphic distributions for the sister taxa to Pan-Serpentes and snake lineages whose first occurrences are determined by older sister taxa. Thin bars represent estimated stratigraphic distributions for taxa with poorly resolved fossil records, or no published fossil record (names in grey). "Scolecophidia" represents a paraphyletic grade with respect to Alethinophidia (see text).
FIGURE 1 in Fossil calibration dates for molecular phylogenetic analysis of snakes 2: Caenophidia, Colubroidea, Elapoidea, Colubridae
FIGURE 1. Phylogeny of Caenophidia from Pyron et al. (2013a) temporally calibrated on minimum ages reported here. Taxon names in grey have not been described in the fossil record. Taxon names in black have been described from fossils. See Holman (2000) and Szyndlar (2012) for records. Taxa labeled with two identifiers represent the most inclusive clades subtended by those identifiers following Pyron et al. (2013a).
FIGURE 2 in Molecular phylogenetic analysis reveals two new species of Discosia from Italy
FIGURE 2. Discosia italica (MFLU 14–0298, holotype). A. Specimen. B, C. Black conidiomata on host surface. D. Vertical section of conidioma. E. Section of peridium. F–I. Conidiogenous cells and developing conidia. J–N. Conidia. Scale bars: B = 500 μm. C = 200 μm. D = 100 μm. E, F = 5 μm. G = 10 μm. H–N = 5 μm.
FIGURE 1 in Molecular phylogenetic analysis reveals two new species of Discosia from Italy
FIGURE 1. Best scoring RAxML tree of Discosia strains obtained from combined dataset of LSU and ITS sequence alignment. Bootstrap support (BS) values of maximum parsimony (MP) and maximum likelihood (ML) (equal to or greater than 50% based on 1.000 replicates) and Bayesian posterior probabilities (PP) (equal to or above 0.95) are shown at the nodes. New species strains are in blue and bold the ex-types (type). The tree is rooted to Pestalotiopsis versicolor (BRIP 14534).
FIGURE 3 in Molecular phylogenetic analysis reveals two new species of Discosia from Italy
FIGURE 3. Discosia fagi (MFLU 14–0299, holotype). A. Specimen. B, C. Black conidiomata on the host surface. D, E. Vertical section of conidioma. F. Section of peridium. G–H. Conidiogenous cells and developing conidia. I–L. Conidia. Scale bars: B = 500 μm. C = 200 μm. D, E = 100 μm. F–L = 5 μm.
FIGURE 4. Orleanesia yauaperyensis Barbosa Rodrigues. A. Habit. B. Inflorescence stem. C in Molecular and morphological phylogenetic analysis and taxonomic revision of the genus Orleanesia (Laeliinae, Epidendroideae, Orchidaceae)
FIGURE 4. Orleanesia yauaperyensis Barbosa Rodrigues. A. Habit. B. Inflorescence stem. C. Flower in frontal view. D. Details of perianth parts. E–F. Floral sheaths. G. Gynostemium posterior view. H. Gynostemium lateral view. I. Anther dorsal view. J. Anther ventral view. K. Pollinias (A.H. Krahl 359). Illustrated by A.H. Krahl.
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International Brain Laboratory public data
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OpenNeuro
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