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149
datasets available to search
ShareScore release 0.9.0
Dataset results
149 results for “network connectivity”
Multi-Omic Integrated networks connect DNA methylation and miRNA with skeletal muscle plasticity to chronic exercise in type 2 diabetic obesity
GEO Series GSE58250. synthetic construct; Homo sapiens. 102 samples. Type: Non-coding RNA profiling by array; Expression profiling by array; Methylation profiling by array.
To Explore the Functional Connectivity Pattern of Cortical Swallowing Network in the Oral Phase of Post-stroke Dysphagia Based on Dynamic Causal Modelling
ClinicalTrials.gov study NCT06564688. IPD Sharing: NO. Countries: 0. Publications: 0.
Transcriptomic network analyses of leaf dehydration responses identify highly connected ABA and ethylene signaling hubs in three grapevine species differing in drought tolerance
GEO Series GSE78920. Vitis vinifera; Vitis x champinii; Vitis riparia. 30 samples. Type: Expression profiling by array.
Setd5 haploinsufficiency alters neuronal network connectivity and leads to autistic-like behaviors in mice
GEO Series GSE121100. Mus musculus. 14 samples. Type: Expression profiling by high throughput sequencing.
Mapping the global chromatin connectivity network in colorectal cancer cell HCT116 and Oxaliplatin-resistant cell HCT116OxR [ATAC-seq]
GEO Series GSE138656. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Code and data used in "Designing marine reserve networks to mitigate larval dispersal volatility with the connectivity portfolio effect"
<p>This repository contains the code and data used in "Designing marine reserve networks to mitigate larval dispersal volatility with the connectivity portfolio effect".</p> <p>The files have been placed inside a .rar to maintain the file structure necessary to run Marxan correctly.</p> <p>The main file to run the analyses is "Comparing spatial conservation prioritisation run.R" which uses functions from "Comparing spatial conservation prioritisation functions.R".</p> <p>The main input files are located in data01.Rdata, data02.Rdata, and data03.Rdata, which contain 1. a data frame of planning unit centroids, sizes, and amount of reef habitat, 2. a subset of planning unit data as a matrix, 3-14. migration, probability, and flow larval dispersal matrices, 15-18. larval release dates, 19-34 indices of Oceanic nino index (ONI), El Nino Modoki index (MOD), Dipole Mode Index (DMI), and Pacific Decadal Oscillation (PDO) of coral trout, snapper, rabbitfish, and octopus.</p> <p> </p>
Datasets related to article "Frequency-dependent functional connectivity in resting state networks"
<p><strong>DATASET #1</strong></p> <p>Power measured for the six resting state networks (DMN, DAN, VAN, LN, SMN, VN) and frequency bands (delta, theta, alpha, beta, gamma) of each participant.</p> <p> </p> <p><strong>DATASET #2</strong></p> <p>Intra-network and inter-network connectivity measured for the six resting state networks (DMN, DAN, VAN, LN, SMN, VN) and frequency bands (delta, theta, alpha, beta, gamma) of each participant.</p>
Highly connected 3D chromatin networks established by an oncogenic fusion protein shape tumor cell identity
<p><strong>Tumor cell identity is the product of complex interactions between oncogenic drivers and mechanisms regulating normal differentiation pathways. Cell fate transitions observed in embryonic development involve changes in 3D genomic organization that provide proper lineage specification, however, whether similar events also occur within tumor cells and contribute to cancer evolution remains largely unexplored. Here we modeled this process in the pediatric bone cancer Ewing sarcoma and investigated high resolution looping and large-scale 3D nuclear conformation changes associated with EWS-FLI1, the oncogenic fusion protein that drives this tumor. We show that chromatin interactions in Ewing sarcoma cells are dominated by highly connected looping hubs centered on EWS-FLI1 binding sites, which directly control the activity of linked enhancers and promoters to establish oncogenic expression programs. Depletion of EWS-FLI1 led to the loss of looping networks associated with the oncoprotein and, strikingly, also resulted in widespread nuclear reorganization through the establishment of new patterns of looping and large-scale inter-compartment connectivity characteristic of mesenchymal stem cells, a candidate cell of origin for this tumor. </strong><strong>Our data thus demonstrate that major architectural features of nuclear organization in cancer cells can be dependent on a single oncogenic event and readily reversed to re-establish latent differentiation programs.</strong></p>
Designing marine reserve networks to mitigate larval dispersal volatility with the connectivity portfolio effect - DATA
<p>Underlying data for "Designing marine reserve networks to mitigate larval dispersal volatility with the connectivity portfolio effect" found at</p> <p>.mat files are annual larval dispersal connectivity matrices for coral trout, snapper, rabbitfish, and octopus, in the province of Southeast Sulawesi, from biophysical dispersal models.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.