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Fig. 2. Geometric mean ratio and 95 in Associations between Toxoplasma gondii infection and steroid hormone levels in spotted hyenas
Fig. 2. Geometric mean ratio and 95% CI estimates from separate sex stratified models of the relationship between T. gondii infection and plasma cortisol. The red dashed line represents the null, and estimates are based on percentile bootstrapping (2000 simulations).
Fig. 1. Geometric mean ratio and 95 in Associations between Toxoplasma gondii infection and steroid hormone levels in spotted hyenas
Fig. 1. Geometric mean ratio and 95% CI estimates from separate sex and age stratified models of the relationship between T. gondii infection and plasma testosterone. The red dashed line represents the null, and estimates are based on percentile bootstrapping (2000 simulations).
Lifespan Fecundity data for The Combined Effects of Macronutrient Ratios and the chico1 Variant on Life History Traits in Drosophila melanogaster
<p>Data sheets for Lifespan Fecundity data for The Combined Effects of Macronutrient Ratios and the chico1 Variant on Life History Traits in Drosophila melanogaster. Chico_life_extention_ds and Chico_CP_life_extention_REP_ds are data sheets from project one that keep track of deaths that occurred in the experiment. Deaths of males, deaths of females, and censors were recorded. Hour = hour of collection, Minute = minute of collection, Days_alive = number of days flies have been inside the vials after initial collection, last_flip = day of last time flies were flipped, Label = id of the vial, repl = replicant group, deadF = number of females that died before that days collection, deadM = number of males that died before each collection, cens = number of censors before each collection, counter = person who counted the flies, Year = year of collection, Month = month of collection, Day = day of collection, notes = observations during collection.</p> <p> LDF_flipping_and_counting_data is a data sheet keeping track of deaths that occured in project two. Deaths of females, males, and censors were recorded. Month = month of collection, Day = day of collection, Year = year of collection, Days_alive = number of days flies have been inside vials, Flipped = were the flies flipped with Y meaning Yes and N meaning No, flipper = person who flipped the flies, DeadF = number of dead females before collection, DeadM = number of dead males before collection, Censor = number of censors before collection, Hour = hour of collection, Minute = minute of collection, Label = id of the vial, Notes = observations during collection.</p> <p>LDF_egg_counting_data is a data sheet keeping track of the number of eggs counted on every image in experiment 2. Image_ID i= image identification number, Label = id of the vial, Day = day of collection, Month = month of collection, Year = year of collection, Counter = person who counted the eggs, Egg_total = number of eggs counted on the photo, notes = observations during collection.</p> <p>Images.zip is a zipped folder of all images that were used to count the number of eggs laid over a ~16-hour time period once per week until the death of all flies in the vial. These images are organized by the date the picture was taken. These pictures were counted using the cell counter extension for ImageJ and counted. Counts were recorded in the LDF_egg_counting_data data sheet.</p>
Formulas for calculating food self-sufficiency ratios in previous studies and author comments
<p><span>The<strong> food self-sufficiency ratio of each country</strong> is obtained by dividing the amount of food production by the amount of food supply, but this is not the only way to calculate the food self-sufficiency ratio. Before starting the calculation, issues such as the food to be calculated, the unit of measurement of food and its data source, and the calculation method for primary and secondary products must be resolved. We summarized how major previous studies have addressed this issue.<strong> The author of this document selected 20 studies that contain specific descriptions from previous studies on this issue</strong>. The author then added comments to all previous studies. The main comment was that although <strong>the formula for calculating the food self-sufficiency ratio of each country is incomplete</strong>, there is a large amount of valid previous research that contains many suggestions.</span></p>
Framework for the Supply-side Food self-sufficiency ratio (SSFSSR)
<p><span>The SSFSSR is<span> <strong> </strong></span><strong>a method of calculating Food self-sufficiency Ratio (FSSR) by considering food from the point it enters the supply chain after harvest until it is consumed.</strong> It thus incorporates the stages of post-harvest, storage, import, and export. Most food in these stages is in the form of primary products, with some being processed into secondary products, such as livestock products, edible oils, sugar products, and juices, which undergo compositional changes. The SSFSSR automatically accounts for the quantitative loss of food due to spoilage, waste, rodent damage, and attrition during processing after harvest. <strong>The conventional methods of the FSSR excludes the calories of primary products used as intermediate inputs, such as livestock feed and raw materials for edible oils, as well as losses</strong>, spoilage, waste, rodent damage, and attrition during processing from the post-harvest stage until human consumption.</span></p>
Fig. 2 in Reproductive potential and biological characteristics of the parasitoid Cotesia flavipes (Hymenoptera: Braconidae) in Diatraea saccharalis (Lepidoptera: Crambidae) depending on parasitoid-host ratio
Fig. 2. Progeny (A) and sex rato (B) of Cotesia flavipes density in Diatraea saccharalis: 1:1, 3:1, 6:1, 9:1, 12:1 (parasitoids to host) at 25 ± 2 °C, 70 ± 10% RH, and a 12:12 h (L:D) photoperiod.
Fig. 3 in Reproductive potential and biological characteristics of the parasitoid Cotesia flavipes (Hymenoptera: Braconidae) in Diatraea saccharalis (Lepidoptera: Crambidae) depending on parasitoid-host ratio
Fig. 3. Rato of female produced by female (A) and body length (mm) (B) of Cotesia flavipes density in Diatraea saccharalis: 1:1, 3:1, 6:1, 9:1, 12:1 (parasitoids to host) at 25 ± 2 °C, 70 ± 10% RH, and a 12:12 h (L:D) photoperiod.
Fig. 1 in Reproductive potential and biological characteristics of the parasitoid Cotesia flavipes (Hymenoptera: Braconidae) in Diatraea saccharalis (Lepidoptera: Crambidae) depending on parasitoid-host ratio
Fig. 1. Parasitsm percentage of Diatraea saccharalis depending on Cotesia flavipes density: 1:1, 3:1, 6:1, 9:1, 12:1 (parasitoids to host) at 25 ± 2 °C, 70 ± 10% RH, and a 12:12 h (L:D) photoperiod. P = 0.05 (significance level).
The data for Radar Circular Polarization Ratio of Near-Earth Asteroids: Links to Spectral Taxonomy and Surface Processes
<p>README</p> <p>% =========================================================================<br>% Project: "Radar Circular Polarization Ratio of Near-Earth Asteroids: Links to <br>% Spectral Taxonomy and Surface Processes"<br>% Author: Edgard G. Rivera-Valentín<br>% Institution: Johns Hopkins University Applied Physics Laboratory<br>% Email: edgard.rivera-valentin@jhuapl.edu<br>% ORCID: 0000-0002-0786-7307<br>% Date: 18 September 2024<br>% =========================================================================</p> <p>% =========================================================================<br>% Licenses:<br>% Any software provided in this repository is licenced under the MIT License, detailed below and within <br>% this archive. <br>% Any data provided in this repository is licenced under Creative Commons Attribution 4.0 International, <br>% detailed within this archive. <br>%<br>% MIT License<br>%<br>% Copyright (c) 2024 The Johns Hopkins University Applied Physics Laboratory LLC<br>%<br>% Permission is hereby granted, free of charge, to any person obtaining a copy<br>% of this software, data, and associated documentation files (the "Software"), to deal<br>% in the Software without restriction, including without limitation the rights<br>% to use, copy, modify, merge, publish, distribute, sublicense, and/or sell<br>% copies of the Software, and to permit persons to whom the Software is<br>% furnished to do so, subject to the following conditions:<br>%<br>% The above copyright notice and this permission notice shall be included in<br>% all copies or substantial portions of the Software.<br>%<br>% THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR<br>% IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,<br>% FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE<br>% AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER<br>% LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,<br>% OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN<br>% THE SOFTWARE.<br>%<br>% ADDITIONAL LICENSING INFORMATION:<br>% Any reuse of the figures and data provided in this repository must abide by <br>% the Copyright policy of the American Astronomical Society Journals:<br>% https://journals.aas.org/article-charges-and-copyright/#AAS_material<br>% =========================================================================</p> <p>% =========================================================================<br>% Description:<br>% This is a data repository for the manuscript published in the Planetary<br>% Science Journal:<br>% Title = Radar Circular Polarization Ratio of Near-Earth Asteroids: Links <br>% to Spectral Taxonomy and Surface Processes<br>% Please see the Zenodo metadata for detailed publicatoin information.<br>% This repository includes:<br>% (1) A csv file that has the table of data used in the published work. The<br>% table includes the data for each near-Earth asteroid used in the<br>% anlaysis. The header information includes: Asteroid Number, Designation<br>% or Name, Taxonomic Type (Following the Bus-DeMeo classification system),<br>% CPR (where CPR is circular polarization ratio), CPR uncertainty (where<br>% the uncertainty is the 1-sigma value), a (where a is semi-major axis in<br>% au), q (where q is the perihelion distance in au), Q (where Q is the<br>% aphelion distance in au), P (where P is the rotational period in hours),<br>% Hmag (where Hmag is the absolute magnitude), and Orbital Class. <br>% (2) A .mrt file that contains the same data as the csv file, but formatted<br>% according to the specifications of the machine-readable table format<br>% used by the AAS Journals. The .mrt version will also be published with<br>% the final PSJ article.<br>% (3) .mat files containing the output from the statistical modeling<br>% presented in the paper. These files are required to run the .m file<br>% included in this repository.<br>% (4) Make Figures.m, which is a Matlab code that remakes all the figures<br>% presented in the paper given the data in each of the .mat files. <br>% (5) The .png files for each of the figures presented in the paper. <br>% =========================================================================</p> <p>% =========================================================================<br>% File Formats:<br>% This archive includes various file formats. <br>% .csv file is a text file format that uses commas to separate values, and<br>% newlines to separate records. <br>% .mrt file is an ASCII byte-by-byte format that is documented here:<br>% https://journals.aas.org/mrt-overview/<br>% and readable by tools such as astropy, TOPCACT, etc. <br>% .m file is a simple text file used by Matlab, it can be opened by any<br>% text editor and executed by Matlab. <br>% .mat file is the file format used by MATLAB for saving data. It can be<br>% ready by other software, such as python, e.g., <br>% https://docs.scipy.org/doc/scipy/reference/generated/scipy.io.loadmat.html<br>% .png file is short for Portable Network Graphic, which is a type of<br>% raster image file. <br>% =========================================================================</p>
Datasets for: Fullerene-based Single Molecule Diodes with Huge Rectification Ratios: A DFT-NEGF Study
<p>Input files and main output files for the study "Fullerene-based Single Molecule Diodes with Huge Rectification Ratios: A DFT-NEGF Study"</p>
The ratio between the sea fog period and the total summer period and ship-bsead observation data
<p>The ratio between the sea fog period and the total summer period (Rsf)</p> <p>We use two methods to judge the sea fog in every year, one is RH (of 1000hPa) > 95% and TD ranging within 0-2 K, the other is CBH and TP to be <100 m and <0.25 mm, respectively, the qualifying times divided by the total time, which is the Rsf-K1 and Rsf-K2 of this data set.</p> <p>The spatial range is 55°S~80°S,-180°~180°,See lat.txt and lon.txt for specific latitude and longitude.</p> <p>We calculated the average annual ratio of sea fog for a total of 41 years (1979~2019).</p> <p>_____</p> <p>We uploaded ten years of ship-based observations, from the 30th (2013) to the 39th (2023) China Antarctic Research Expedition (CHINARE), have been taken on an ice-breaker and scientific research vessel, “Snow Dragon.” </p>
The in situ Mg/Ca ratios of planktonic foraminifera shells in the northeastern South China Sea: an attempt to get efficient and reliable proxies
<p>Planktonic foraminifera are one of the important carrier<span>s</span> of the physico-chemical environments. Nowadays, the development of <em>in situ</em> microanalysis technology provides a new opportunity for further understanding the distribution and variation of trace element concentrations in foraminifera shells. In this study, we focus on the <em>in situ</em> Mg/Ca ratios in four planktonic foraminifera shells from the surface sediments of the northeastern slope of the South China Sea (SCS). The results of electron microprobe mapping indicate that <em>G. ruber</em> had periodic bands of high Mg contents and Mg/Ca ratios, consistent with the results of <span>LA-ICP-MS.</span> In contrast, <em>N. dutertrei</em>, <em>P. obliquiloculata,</em> and <em>G.inflata</em> had thick calcite layer with low Mg contents and Mg/Ca ratios. The Mg/Ca ratios of shells may be attributed to symbionts, but the physiological regulation may also have some contributions. Meanwhile, contaminants may lead to the relatively higher Mg/Ca ratios. Therefore, the large Mg/Ca variations in foraminifera shells are not only affected by the surrounding seawater temperature but also constrained by other factors. At last, we employed this method to reconstruct the Mg/Ca-SST in the northeastern SCS over the past ~3000 years. The similar trend to the previous SST records proves that this method is reliable. We hope that this method can be widely applied in the future due to the efficient, fast, and high spatial resolution with small sample amounts.</p>
Real-time tilt undersampling optimization during electron tomography of beam sensitive samples using golden ratio scanning and RECAST3D
<p>This dataset contains experimental data related: "Real-time tilt undersampling optimization during electron tomography of beam sensitive samples using golden ratio scanning and RECAST3D", T.Craig, A. Kadu, K.J. Batenburg and S. Bals, <em><strong>Nanoscale</strong></em>, 2023,<strong>15</strong>, 5391-5402 (2023).</p>
Data to accompany "Stable isotope ratios in seawater nitrate reflect the influence of Pacific water along the northwest Atlantic margin".
<p>This dataset accompanies the article by Owen A. Sherwood, Samuel H. Davin, Nadine Lehmann, Carolyn Buchwald, Evan N. Edinger, Moritz F. Lehmann, and Markus Kienast: "Stable isotope ratios in seawater nitrate reflect the influence of Pacific water along the northwest Atlantic margin", Biogeosciences, 18, 1–20, 2021. <a href="https://doi.org/10.5194/bg-2021-45">https://doi.org/10.5194/bg-2021-45</a>.</p> <p>The dataset comprises nutrient concentrations and nitrate isotope ratios for “bottle” samples of seawater collected by CTD/Rosette from 25 stations along the northwest Atlantic Ocean, from the Labrador shelf to northern Baffin Bay. Seawater physical properties measured by CTD are also provided for the depths at which bottle samples were collected. The complete sampling and analytical methods are provided in the accompanying article. </p>
Latest Ordovician (Hirnantian) iodine to calcium ratio (I/Ca) data for Anticosti Island (Quebec, Canada) and Copenhagen Canyon (Nevada, USA)
<p>This spreadsheet contains redox proxy data (I/Ca) associated with the manuscript "Depth-dependent Late Ordovician anoxia related to a reorganization of ocean circulation", for the Latest Ordovician (latest Hirnantian, Late Ordovician Mass Extinction phase #2 – LOME 2; ca. 444 million years ago) in Anticosti Island (Quebec, Canada) and Copenhagen Canyon (Nevada, USA). The reader is referred to the associated paper for a description of the methods.</p>
Figure 2 in Population dynamics, age structure and sex ratio of the bromeliad-dwelling jumping spider, Psecas chapoda (Salticidae)
Figure 2. Mean number (¡SE) of Psecas chapoda per Bromelia balansae with no inflorescence, from May 1998 to April 2000 (N53516 spiders).
Figure 1 in Population dynamics, age structure and sex ratio of the bromeliad-dwelling jumping spider, Psecas chapoda (Salticidae)
Figure 1. Fluctuations in the number of Psecas chapoda and egg sacs (log) on bromeliads with and without inflorescence, and the frequency (%) of bromeliads in bloom (with inflorescence or infrutescence) between May 1998 and April 2000 (N53516 spiders and 314 egg sacs).
Figure 5 in Population dynamics, age structure and sex ratio of the bromeliad-dwelling jumping spider, Psecas chapoda (Salticidae)
Figure 5. Mean number (¡SE) of spiders Psecas chapoda on bromeliads that produced inflorescence between August and December and on bromeliads that did not produce inflorescence until December, in 1998 (A) and 1999 (B). The frequency (%) of bromeliads that bloomed up to December is also shown.
Figure 4 in Population dynamics, age structure and sex ratio of the bromeliad-dwelling jumping spider, Psecas chapoda (Salticidae)
Figure 4. Phenogram of the Psecas chapoda population on plants of Bromelia balansae without inflorescence, from May 1998 to April 2000 (N53516 spiders).
Figure 1 in Protandric simultaneous hermaphroditism and sex ratio in Lysmata nayaritensis Wicksten, 2000 (Decapoda: Caridea)
Figure 1. Lysmata nayaritensis, anatomical and morphological differences between males and hermaphrodites. (A) Gonopores of male; (B) spermatophores retrieved from gonopores of hermaphrodite; (C) sperm from male; (D) ovotestes from dissected hermaphrodite (anterior female and posterior male portions on the left and right, respectively); (E) close-up of the male gonad portion (arrow points at the left vas deferentia); (F) ovotestes from male (anterior female and male portions on left and right, respectively) (upper and lower arrows point at the right oviduct and left vas deferentia, respectively); (G) close-up of the female gonad portion in male (arrow points at immature oocyte); (H) endopod of first pleopod lacking cincinulli in hermaphrodite; (I) endopod of second pleopod lacking appendix masculina in hermaphrodite; (J) endopod of first pleopod in male (arrow points at cincinulli); (K) endopod of second pleopod in male (arrow points at appendix masculina).
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.