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371
datasets available to search
ShareScore release 0.9.0
Dataset results
371 results for “single cell genomics”
Single-cell DNA replication sequencing (scRepli-seq): a method for mapping replication timing domains genome wide in single mammalian cells
GEO Series GSE138634. Homo sapiens. 26 samples. Type: Other.
A probabilistic framework for cellular lineage reconstruction using integrated single-cell 5-hydroxymethylcytosine and genomic DNA sequencing
GEO Series GSE131678. Homo sapiens; Mus musculus. 16 samples. Type: Methylation profiling by high throughput sequencing.
SNP array analysis of single cell genomes
GEO Series GSE51538. Homo sapiens. 101 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
Human lineage tracing enabled by mitochondrial mutations and single cell genomics [TF1_clones_scMito]
GEO Series GSE115212. Homo sapiens. 94 samples. Type: Other.
Genome-wide maps and functional peak analysis of ultrashort single-stranded cell-free DNA (uscfDNA) and mononucleosomal cell-free DNA (mncfDNA) in human plasma
GEO Series GSE202430. Homo sapiens. 3 samples. Type: Other.
BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single cell analysis [Pluripotency]
GEO Series GSE130422. Homo sapiens. 4 samples. Type: Other; Expression profiling by high throughput sequencing.
BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single cell analysis [Genotyping]
GEO Series GSE130421. Homo sapiens. 3 samples. Type: Other.
Single cell RNA sequening Analysis of T cell genomic change in the HCT recipients given Tacrolimus or anti-IL-2 treatment
GEO Series GSE149027. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Single-cell parallel analysis of DNA damage and transcriptome reveals selective genome vulnerability
GEO Series GSE268567. Mus musculus; Homo sapiens. 30 samples. Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing.
Single-cell genomics reveals a novel cell state during smooth muscle cell phenotypic switching and potential therapeutic targets for atherosclerosis in mouse and human [mouse]
GEO Series GSE155513. Mus musculus. 14 samples. Type: Expression profiling by high throughput sequencing.
Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq
GEO Series GSE168776. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Dissecting the single-cell transcriptome network underlying gastric premalignant lesions and early gastric cancer [10x genomics]
GEO Series GSE134520. Homo sapiens. 13 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide DNA replication profiling and full-length total RNA sequencing from the same single cell [02_Mouse8cell_embryos]
GEO Series GSE278944. Mus musculus. 26 samples. Type: Expression profiling by high throughput sequencing; Other.
Genome-wide analysis of gefitinib-tolerant gene expression in single cell-derived clones
GEO Series GSE103155. Homo sapiens. 12 samples. Type: Expression profiling by array.
Human lineage tracing enabled by mitochondrial mutations and single cell genomics [CRC_scRNA]
GEO Series GSE122582. Homo sapiens. 272 samples. Type: Expression profiling by high throughput sequencing.
Simultaneous single-cell three-dimensional genome and gene expression profiling uncovers dynamic enhancer connectivity underlying olfactory receptor choice
GEO Series GSE240128. Mus musculus; Homo sapiens. 1743 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Human lineage tracing enabled by mitochondrial mutations and single cell genomics [CC100_scRNA]
GEO Series GSE115217. Homo sapiens. 480 samples. Type: Expression profiling by high throughput sequencing.
Single cell ATAC-seq analysis of H3.3K4M WT and Hom brain samples (10X Genomics Multiome)
GEO Series GSE293655. Mus musculus. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Human lineage tracing enabled by mitochondrial mutations and single cell genomics [TF1_barcoding_ATAC]
GEO Series GSE118202. Homo sapiens. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Multi-modal single-cell and whole-genome sequencing of minute, frozen specimens to propel clinical applications [scRNA and snRNA]
GEO Series GSE216069. Homo sapiens. 71 samples. Type: Expression profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.