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336 results for “sparrow”
Data from: Stress hormone receptors change as range expansion progresses in house sparrows
As ranges expand, individuals encounter different environments at the periphery than at the centre of the range. Previously, we have shown that glucocorticoids (GCs) vary with range expansion: individuals at the range edge release more GCs in response to restraint. Here, we measured hippocampal mRNA expression of GC receptors (mineralocorticoid, MR and glucocorticoid, GR) in eight house sparrow (Passer domesticus) populations varying in age. We found that individuals closest to the range edge had the lowest expression of MR relative to GR; in all likelihood, this relationship was driven by a marginal reduction of MR mRNA at the range edge. Reduced MR (relative to GR) might allow enhanced GC binding to GR, the lower affinity receptor that would enhance a rapid physiological and behavioural response to stressors. The insights gained from this study are not only enlightening to introduced species, but may also predict how certain species will react as their ranges shift owing to anthropogenic changes.
Data from: Environmental selection is a main driver of divergence in house sparrows (Passer domesticus) in Romania and Bulgaria
Both neutral and adaptive evolutionary processes can cause population divergence, but their relative contributions remain unclear. We investigated the roles of these processes in population divergence in house sparrows (Passer domesticus) from Romania and Bulgaria, regions characterized by high landscape heterogeneity compared to Western Europe. We asked whether morphological divergence, complemented with genetic data in this human commensal species, was best explained by environmental variation, geographic distance, or landscape resistance—the effort it takes for an individual to disperse from one location to the other—caused by either natural or anthropogenic barriers. Using generalized dissimilarity modeling, a matrix regression technique that fits biotic beta diversity to both environmental predictors and geographic distance, we found that a small set of climate and vegetation variables explained up to ~30% of the observed divergence, whereas geographic and resistance distances played much lesser roles. Our results are consistent with signals of selection on morphological traits and of isolation by adaptation in genetic markers, suggesting that selection by natural environmental conditions shapes population divergence in house sparrows. Our study thus contributes to a growing body of evidence that adaptive evolution may be a major driver of diversification.
Data from: DNA methylation predicts immune gene expression in introduced house sparrows (Passer domesticus)
Populations undergoing range expansions are often faced with novel selective pressures, and to cope with such challenges, populations must either adapt quickly or exhibit phenotypic plasticity. This latter option allows for rapid phenotypic adjustments and persistence in novel environments, and thus could be advantageous at range‐edges. Our previous research on house sparrows in Kenya—a site of ongoing range expansion— and a growing literature suggests that invasion success is facilitated by epigenetic regulation of gene expression. Previously, we found (i) differences in the expression of a microbial surveillance gene (i.e. Toll‐like receptor 4—TLR4), and (ii) extensive variation in genome‐wide DNA methylation among house sparrows across Kenya. Here, our goal was to investigate whether these two observations are related, specifically whether DNA methylation within a target sequence upstream of the TLR4 transcription start site is associated with variation in TLR4 expression. We found that DNA methylation in the aforementioned region was quite variable among individuals, and variation at one CpG site predicted differences in TLR4 expression. Moreover, we found genetic variation within the same sequence upstream of the TLR4 exon, but this variation did not predict TLR4 expression. To our knowledge, this is the first study to demonstrate an association between DNA methylation and the expression of an ecologically relevant trait in a range‐expanding vertebrate.
Recent immigrants alter the quantitative genetic architecture of paternity in song sparrows
Quantifying additive genetic variances and cross-sex covariances in reproductive traits, and identifying processes that shape and maintain such (co)variances, is central to understanding the evolutionary dynamics of reproductive systems. Gene flow resulting from among-population dispersal could substantially alter additive genetic variances and covariances in key traits in recipient populations, thereby altering forms of sexual conflict, indirect selection and evolutionary responses. However, the degree to which genes imported by immigrants do in fact affect quantitative genetic architectures of key reproductive traits and outcomes is rarely explicitly quantified. We applied structured quantitative genetic analyses to multi-year pedigree, pairing and paternity data from free-living song sparrows (Melospiza melodia) to quantify the differences in mean breeding values for major sex-specific reproductive traits, specifically female extra-pair reproduction and male paternity loss, between recent immigrants and the previously existing population. We thereby quantify effects of natural immigration on the means, variances and cross-sex covariance in total additive genetic values for extra-pair paternity arising within the complex socially monogamous but genetically polygynandrous reproductive system. Recent immigrants had lower mean breeding values for male paternity loss, and somewhat lower values for female extra-pair reproduction, than the local recipient population, and would therefore increase the emerging degree of reproductive fidelity of social pairings. Furthermore, immigration increased the variances in total additive genetic values for these traits, but decreased the magnitudes of the negative cross-sex genetic covariation and correlation below those evident in the existing population. Immigration thereby increased the total additive genetic variance but could decrease the magnitude of indirect selection acting on sex-specific contributions to paternity outcomes. These results demonstrate that dispersal and resulting immigration and gene flow can substantially affect quantitative genetic architectures of complex local reproductive systems, implying that comprehensive theoretical and empirical efforts to understand mating system dynamics will need to incorporate spatial population processes.
Data from: A longitudinal genetic survey identifies temporal shifts in the population structure of Dutch house sparrows
Dutch house sparrow (Passer domesticus) densities dropped by nearly 50% since the early 1980s, and similar collapses in population sizes have been reported across Europe. Whether, and to what extent, such relatively recent demographic changes are accompanied by concomitant shifts in the genetic population structure of this species needs further investigation. Therefore, we here explore temporal shifts in genetic diversity, genetic structure and effective sizes of seven Dutch house sparrow populations. To allow the most powerful statistical inference, historical populations were resampled at identical locations and each individual bird was genotyped using nine polymorphic microsatellites. Although the demographic history was not reflected by a reduction in genetic diversity, levels of genetic differentiation increased over time, and the original, panmictic population (inferred from the museum samples) diverged into two distinct genetic clusters. Reductions in census size were supported by a substantial reduction in effective population size, although to a smaller extent. As most studies of contemporary house sparrow populations have been unable to identify genetic signatures of recent population declines, results of this study underpin the importance of longitudinal genetic surveys to unravel cryptic genetic patterns.
Data from: Range expansion of house sparrows (Passer domesticus) in Kenya: evidence of genetic admixture and human-mediated dispersal
Introduced species offer an opportunity to study the ecological process of range expansions. Recently, 3 mechanisms have been identified that may resolve the genetic paradox (the seemingly unlikely success of introduced species given the expected reduction in genetic diversity through bottlenecks or founder effects): multiple introductions, high propagule pressure, and epigenetics. These mechanisms are probably also important in range expansions (either natural or anthropogenic), yet this possibility remains untested in vertebrates. We used microsatellite variation (7 loci) in house sparrows (Passer domesticus), an introduced species that has been spreading across Kenya for ~60 years, to determine if patterns of variation could explain how this human commensal overcame the genetic paradox and expresses such considerable phenotypic differentiation across this new range. We note that in some cases, polygenic traits and epistasis among genes, for example, may not have negative effects on populations. House sparrows arrived in Kenya by a single introduction event (to Mombasa, ~1950) and have lower genetic diversity than native European and introduced North American populations. We used Bayesian clustering of individuals (n = 233) to detect that at least 2 types of range expansion occurred in Kenya: one with genetic admixture and one with little to no admixture. We also found that genetic diversity increased toward a range edge, and the range expansion was consistent with long-distance dispersal. Based on these data, we expect that the Kenyan range expansion was anthropogenically influenced, as the expansions of other introduced human commensals may also be.
Data from: Is pairing with a relative heritable? estimating female and male genetic contributions to the degree of biparental inbreeding in song sparrows (Melospiza melodia)
The degree of inbreeding expressed within populations can profoundly shape evolutionary dynamics. The degree to which individuals inbreed is frequently assumed to evolve in response to selection, for example resulting from inbreeding depression. Such evolutionary responses require additive genetic variance (VA) in the degree to which individuals inbreed. However, the magnitude of VA in the degree of biparental inbreeding has never been estimated. We devised a quantitative genetic model to estimate sex-specific VA in the degree to which individuals inbreed, while accounting for effects of individuals' own coefficients of inbreeding and genetic effects stemming from immigration. We applied this model to the degree of inbreeding expressed through social pairing in free-living song sparrows (Melospiza melodia). VA estimates for both sexes appreciably exceeded zero and the cross-sex genetic covariance was strongly positive, creating substantial total VA in the degree of inbreeding. Our analyses also revealed inbreeding depression in the degree of inbreeding such that more inbred individuals paired with closer relatives, and immigrant effects such that individuals with greater genomic contributions from immigrants paired with more distant relatives. We thereby demonstrate that the degree of biparental inbreeding can show substantial VA in nature and might consequently evolve in response to selection.
Singing under glass: rapid effects of anthropogenic habitat modification on song and response behaviours in an isolated house sparrow (Passer domesticus) population
<p>Anthropogenic noise pollution and the introduction of novel infrastructure can impose strong selective pressures on avian communication by affecting the efficacy with which acoustic signals are transmitted and received. Many species have now been shown to sing at higher frequencies in noisy urban environments. However, few studies have investigated the effects of signal modification on the response behaviours of receivers, and fewer still have been able to indicate the timescale over which these changes in pitch have occurred. We compare vocal communication between house sparrows (Passer domesticus) that reside within the world's largest, single-span glasshouse (completed in the year 2000), and house sparrows directly outside this glasshouse, in open farmland. The glasshouse contrasts both acoustically and physically with the external environment, low frequency background noise being significantly louder inside than outside. We show that minimum song frequency was significantly higher inside the glasshouse than in surrounding farm habitat. Using song playback, we also found that birds within the glasshouse reacted more strongly to playbacks from the glasshouse habitat than they did to playback of song from farm birds outside. The degree of difference in frequency is similar to that shown for other bird species between urban and rural environments, demonstrating that such behavioural differences may arise over a relatively short time period (14 years in this case)</p>
Data from: Epigenetic and genetic variation among three separate introductions of the house sparrow (Passer domesticus) into Australia
Invasive populations are often associated with low levels of genetic diversity due to population bottlenecks at the initial stages of invasion. Despite this, the ability of invasive species to adapt rapidly in response to novel environments is well documented. Epigenetic mechanisms have recently been proposed to facilitate the success of invasive species by compensating for reduced levels of genetic variation. Here, we use MS-AFLP and microsatellite analyses to compare levels of epigenetic and genetic diversity and differentiation across 15 sites in the introduced Australian house sparrow population. We find patterns of epigenetic and genetic differentiation that are consistent with historical descriptions of three distinct, introductions events. However unlike genetic differentiation, epigenetic differentiation was higher among sample sites than among invasion clusters, suggesting that patterns of epigenetic variation are more strongly influenced by local environmental stimuli or sequential founder events than the initial diversity in the introduction population. Interestingly, we fail to detect correlations between pairwise site comparisons of epigenetic and genetic differentiation, suggesting that some of the observed epigenetic variation has arisen independently of genetic variation. We also fail to detect the potentially compensatory relationship between epigenetic and genetic diversity that has been detected in a more recent house sparrow invasion in Africa. We discuss the potential for this relationship to be obscured by recovered genetic diversity in more established populations, and highlight the importance of incorporating introduction history into population-wide epigenetic analyses.
Data from: Across-year social stability shapes network structure in wintering migrant sparrows
Migratory birds often form flocks on their wintering grounds, but important details of social structure such as the patterns of association between individuals are virtually unknown. We analysed networks of co-membership in short-term flocks for wintering golden-crowned sparrows (Zonotrichia atricapilla) across three years and discovered social complexity unsuspected for migratory songbirds. The population was consistently clustered into distinct social communities within a relatively small area (~ 7 ha). Birds returned to the same community across years, with mortality and recruitment leading to some degree of turnover in membership. These spatiotemporal patterns were explained by the combination of space use and social preference – birds that flocked together in one year flocked together again in the subsequent year more often than were expected based on degrees of home range overlap. Our results suggest that a surprising level of social fidelity across years leads to repeatable patterns of social network structure in migratory populations.
Data from: New insights into New World biogeography: an integrated view from the phylogeny of blackbirds, cardinals, sparrows, tanagers, warblers, and allies
Understanding the biogeographic origins and temporal sequencing of groups within a region or of lineages within an ecosystem can yield important insights into evolutionary dynamics and ecological processes. Fifty years ago, Ernst Mayr generated comprehensive—if limited—inferences about the origins of the New World avifaunas, including the importance of pre-Isthmian dispersal between North and South America. Since then, methodological advances have improved our ability to address many of the same questions, but the phylogenies upon which such analyses should be based have been incompletely sampled or fragmentary. Here, we report a near-species-level phylogeny of the diverse (~832 species) New World clade Emberizoidea—the group that includes the familiar sparrows, cardinals, blackbirds, wood-warblers, tanagers, and their close relatives—to our knowledge the largest essentially complete (≥95%) phylogenetic hypothesis for any group of organisms. Biogeographic analyses based on this tree suggest initial dispersal into the New World via Beringia, with rapid subsequent diversification, including early dispersal of 1 lineage (the tanagers, Thraupidae) into South America. We found substantial dispersal between North and South America prior to closure of the Isthmus of Panama, but with a notable increase afterward, with a directional bias from north to south. With much greater detail and historical rigor, these analyses largely confirm Mayr's speculations based on taxonomy, resolving outstanding ambiguity regarding the continental origins of some groups such as the Emberizidae and Icteridae. The phylogeny reported here will be a resource of broad utility for addressing additional evolutionary and ecological questions with this diverse group.
Data from: Individuals' expected genetic contributions to future generations, reproductive value, and short-term metrics of fitness in free-living song sparrows (Melospiza melodia)
Appropriately defining and enumerating 'fitness' is fundamental to explaining and predicting evolutionary dynamics. Yet, general theoretical concepts of fitness are often hard to translate into quantities that can be measured in wild populations experiencing complex environmental, demographic, genetic and selective variation. While the 'fittest' entities might be widely understood to be those that ultimately leave most descendants at some future time, such long-term legacies can rarely be measured, impeding evaluation of the degree to which tractable short-term metrics of individual fitness could potentially serve as useful direct proxies. One opportunity for conceptual and empirical convergence stems from the principle of individual reproductive value (Vi), defined as the number of copies of each of an individual's alleles that is expected to be present in future generations given the individual's realised pedigree of descendants. Since Vi tightly predicts an individual's longer-term genetic contribution, quantifying Vi provides a tractable route to quantifying what, to date, has been an abstract theoretical fitness concept. We used complete pedigree data from free-living song sparrows (Melospiza melodia) to demonstrate that individuals' expected genetic contributions stabilise within an observed 20-year (i.e. ~8 generation) time period, allowing estimation of individual Vi. Considerable among-individual variation in Vi was evident in both sexes. Standard metrics of individual lifetime fitness, comprising lifespan, lifetime reproductive success and projected growth rate, typically explained less than half the variation. We thereby elucidate the degree to which fitness metrics observed on individuals concur with measures of longer-term genetic contributions, and consider the degree to which analyses of pedigree structure could provide useful complementary insights into evolutionary outcomes.
Data from: Extrapair paternity rates vary with latitude and elevation in Emberizid sparrows
Mating systems can vary among species and populations and thus influence evolutionary trajectories, ecological traits, and population demography. The siring of offspring by an extrapair male, or extrapair paternity (EPP), is a widespread and varied phenomenon in all vertebrate classes. However, we do not understand all of the factors associated with variation in EPP rates. The breeding synchrony hypothesis suggests that EPP rates should increase with latitude and elevation, whereas the paternal care hypothesis predicts that EPP rates should decrease with elevation. To address these hypotheses, we investigated how population EPP rates vary over elevation and latitude in emberizid sparrows. In comparative analyses including the effects of phylogeny, the relationship between EPP rates and elevation depended on latitude. EPP rates were greater in higher-latitude populations. But within higher-latitude populations, EPP rates decreased with increasing elevation. These findings provide support for both the breeding synchrony and paternal care hypotheses, suggesting that in lower-latitude, higher-elevation populations, the need for male parental care does not outweigh the benefits of seeking extrapair fertilizations in populations with relatively synchronous breeding. In contrast, at higher-latitude, higher-elevation sites, the need for male parental care is greater and might drive lower rates of extrapair mating despite highly synchronous breeding.
Data from: Genetic covariance between components of male reproductive success: within-pair versus extra-pair paternity in song sparrows
The evolutionary trajectories of reproductive systems, including both male and female multiple mating and hence polygyny and polyandry, are expected to depend on the additive genetic variances and covariances in and among components of male reproductive success achieved through different reproductive tactics. However, genetic covariances among key components of male reproductive success have not been estimated in wild populations. We used comprehensive paternity data from socially monogamous but genetically polygynandrous song sparrows (Melospiza melodia) to estimate additive genetic variance and covariance in the total number of offspring a male sired per year outside his social pairings (i.e. his total extra-pair reproductive success achieved through multiple mating) and his liability to sire offspring produced by his socially paired female (i.e. his success in defending within-pair paternity). Both components of male fitness showed nonzero additive genetic variance, and the estimated genetic covariance was positive, implying that males with high additive genetic value for extra-pair reproduction also have high additive genetic propensity to sire their socially paired female's offspring. There was consequently no evidence of a genetic or phenotypic trade-off between male within-pair paternity success and extra-pair reproductive success. Such positive genetic covariance might be expected to facilitate ongoing evolution of polygyny and could also shape the ongoing evolution of polyandry through indirect selection.
Data from: Development of diagnostic microsatellite markers from whole-genome sequences of Ammodramus sparrows for assessing admixture in a hybrid zone
Studies of hybridization and introgression and, in particular, the identification of admixed individuals in natural populations benefit from the use of diagnostic genetic markers that reliably differentiate pure species from each other and their hybrid forms. Such diagnostic markers are often infrequent in the genomes of closely related species, and genomewide data facilitate their discovery. We used whole-genome data from Illumina HiSeqS2000 sequencing of two recently diverged (600,000 years) and hybridizing, avian, sister species, the Saltmarsh (Ammodramus caudacutus) and Nelson's (A. nelsoni) Sparrow, to develop a suite of diagnostic markers for high-resolution identification of pure and admixed individuals. We compared the microsatellite repeat regions identified in the genomes of the two species and selected a subset of 37 loci that differed between the species in repeat number. We screened these loci on 12 pure individuals of each species and report on the 34 that successfully amplified. From these, we developed a panel of the 12 most diagnostic loci, which we evaluated on 96 individuals, including individuals from both allopatric populations and sympatric individuals from the hybrid zone. Using simulations, we evaluated the power of the marker panel for accurate assignments of individuals to their appropriate pure species and hybrid genotypic classes (F1, F2, and backcrosses). The markers proved highly informative for species discrimination and had high accuracy for classifying admixed individuals into their genotypic classes. These markers will aid future investigations of introgressive hybridization in this system and aid conservation efforts aimed at monitoring and preserving pure species. Our approach is transferable to other study systems consisting of closely related and incipient species.
Data from: A test of the eavesdropping avoidance hypothesis as an explanation for the structure of low amplitude aggressive signals in the song sparrow
Low amplitude signals function in private exchanges of information between signalers and nearby receivers. The eavesdropping avoidance hypothesis proposes that selection favors quiet threat signals in order to avoid the costs of eavesdroppers. If true, then selection should favor other acoustic traits in addition to low amplitude that lead to quiet signals transmitting less effectively through the environment compared to broadcast signals. The "warbled" soft songs of male song sparrows differ from "crystallized" soft songs and from broadcast songs in a number of acoustic traits, suggesting that these songs may transmit less effectively. We tested this prediction in a field experiment by playing broadcast songs, crystallized soft songs, and warbled soft songs through a loudspeaker at the same amplitude and recording the propagated songs at five distances, at two heights, and in two different habitat types. Counter to our prediction, we found no evidence that either form of soft song transmits differently than broadcast song when all were played loudly. If anything, soft songs transmitted more effectively when all songs were played quietly. Our results do not support one prediction made by the eavesdropping avoidance hypothesis, although the possibility remains that reduced amplitude alone is sufficient to reduce eavesdropping. The question of why warbled soft song differs in acoustic structure remains unresolved.
Data from: Does the house sparrow Passer domesticus represent a global model species for egg rejection behavior?
Conspecific brood parasitism (CP) is a facultative breeding tactic whereby females lay their eggs in the nests of conspecifics. In some species, potential host individuals have evolved the ability to identify and reject foreign eggs from their nest. Previous studies suggest that the ubiquitous House Sparrow Passer domesticus in Spain and South Africa employs both CP and parasitic egg rejection, while a population in China does not. Given the species' invasive range expansions, the House Sparrow represents a potentially excellent global model system for egg rejection across variable ecological conditions. The present study examines House Sparrow responses to experimental parasitism at three geographically distinct locations (in Israel, North America, and New Zealand) to provide a robust test of how general the findings of the previous studies are. In all three geographic regions egg rejection rates were negligible and not statistically different from background rates of disappearance of control eggs, suggesting that the House Sparrow is not a suitable model species for egg rejection experiments on a global scale.
Data from: Nestling and adult sparrows respond differently to conspecific dialects
Understanding the causes and consequences of divergence in mate recognition traits has long been a fundamental question in evolutionary biology. In songbirds, songs are culturally transmitted, and cultural divergence can generate discrete geographic variation in song (i.e., dialects). Understanding how responses to within- versus across-species variation in songs changes across life stages may shed light on the functional significance of population divergence in learned traits. Here, we use a novel combination of song playbacks to adult and nestling golden-crowned sparrows to compare responses to local conspecific, foreign conspecific and heterospecific songs prior to and after song learning. We found that nestlings respond equally little to both foreign conspecific and heterospecific songs. By contrast, the response of adult males to foreign conspecific songs was stronger than their response to heterospecific song, but weaker than their response to local conspecific song. Our study suggests that early local experience may interact with conspecific biases prior to song learning, in a way that has not been previously documented. Our results illustrate the importance of studying behavior at multiple life stages in order to better understand the effect of early experience on cultural and biological evolution.
Data from: Morphology-function relationships and repeatability in the sperm of Passer sparrows
Sperm performance is likely to be an important determinant of male reproductive success, especially when females copulate with multiple males. Understanding sperm performance is therefore crucial to fully understand the evolution of male reproductive strategies. In this study, we examined the repeatability of sperm morphology and motility measures over three breeding seasons, and we studied relationships between sperm morphology and function. We conducted this study in wild-derived captive house sparrows (Passer domesticus) and Spanish sparrows (P. hispaniolensis). Results for the two species were similar. As predicted from results in other passerine species, total sperm length was highly repeatable across ejaculates, and repeatability for the length of other components was moderate. The repeatability of sperm swimming speed across ejaculates was lower, but statistically significant, suggesting that sperm velocity may be a relatively dynamic trait. Surprisingly, swimming speed did not correlate with the relative length of the midpiece, and it correlated negatively with the relative length of the flagellum and with total sperm length. This pattern is the opposite of what theory predicts and differs from what has been found in house sparrows before. Also contrary to previous work, we found no evidence that total sperm length correlates with sperm longevity. These results therefore highlight the need for a better understanding of relationships between sperm morphology and function in passerine birds.
Data from: Hybrid speciation by sorting of parental incompatibilities in Italian sparrows
Speciation by hybridization is emerging as a significant contributor to biological diversification. Yet, little is known about the relative contributions of (i) evolutionary novelty and (ii) sorting of preexisting parental incompatibilities to the build-up of reproductive isolation under this mode of speciation. Few studies have addressed empirically whether hybrid animal taxa are intrinsically isolated from their parents, and no study has so far investigated by which of the two aforementioned routes intrinsic barriers evolve. Here, we show that sorting of preexisting parental incompatibilities contributes to intrinsic isolation of a hybrid animal taxon. Using a genomic cline framework, we demonstrate that the sex-linked and mito-nuclear incompatibilities isolating the homoploid hybrid Italian sparrow at its two geographically separated hybrid-parent boundaries represent a subset of those contributing to reproductive isolation between its parent species, house and Spanish sparrows. Should such a sorting mechanism prove to be pervasive, the circumstances promoting homoploid hybrid speciation may be broader than currently thought, and indeed there may be many cryptic hybrid taxa separated from their parent species by sorted, inherited incompatibilities.
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