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FIGURE 2 in Water column use by reef fishes of different color patterns
FIGURE 2 | Phylogeny of the 100 species used in this study generated from data in the Open Tree of Life. Branch lengths represent phylogenetic distance and were estimated by the Grafen's method. Color bars denote the water column use (blue shades) and coloration pattern (red shades) we attributed to them.
FIGURE 4 in Water column use by reef fishes of different color patterns
FIGURE 4 | Results of the Bayesian statistical analysis showing the difference in the proportion of coloration types between positions in the water column. Points denote the mode; thick and thin lines denote 67% and 95% credible intervals. Comparisons based on the expected values of the posterior predictive distribution. The analysis indicated that presence of contrasting contour breaks patches is more frequent in benthic than in demersal and pelagic species; and that silvering is more frequent in pelagic species than in demersal and benthic species.
FIGURE 1 in Water column use by reef fishes of different color patterns
FIGURE 1 | Species exemplifying the color patterns used in this study. A. Large contrasting patterns typical of disruptive coloration in Hippocampus reidi (~ 13 cm of total length, TL); B. Silvery bodies in Haemulon aurolineatum Cuvier, 1830 (~ 18 cm TL); C. Contrasting stripes typical of motion-dazzle in Elacatinus figaro Sazima, Moura & Rosa, 1997 (~ 3 cm TL); D. Homogeneous coloration in adult female Parablennius pilicornis (Cuvier, 1829) (~ 6 cm TL). Photographs by Gualter Pedrini.
Linked collectors and determiners for: Phytoplankton community composition in the water column of the West Greenland shelf, July 2021.
Natural history specimen data linked to collectors and determiners held within, "Phytoplankton community composition in the water column of the West Greenland shelf, July 2021". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/6e5fa973-a7cc-4867-8606-8bcaa395f7de">https://bionomia.net/dataset/6e5fa973-a7cc-4867-8606-8bcaa395f7de</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/6e5fa973-a7cc-4867-8606-8bcaa395f7de">https://gbif.org/dataset/6e5fa973-a7cc-4867-8606-8bcaa395f7de</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Protist community composition in the water column on the East Greenland shelf, May 2022.
Natural history specimen data linked to collectors and determiners held within, "Protist community composition in the water column on the East Greenland shelf, May 2022". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/270fc4bf-3225-4af4-a5c0-dca8652ac37c">https://bionomia.net/dataset/270fc4bf-3225-4af4-a5c0-dca8652ac37c</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/270fc4bf-3225-4af4-a5c0-dca8652ac37c">https://gbif.org/dataset/270fc4bf-3225-4af4-a5c0-dca8652ac37c</a>. Formatted as a Frictionless Data package.
Depth profiles of water column dissolved methane, density and biomass of zooplankton (specifically, Chaoborus spp.), and measurements of methane extracted from Chaoborus spp. during two sampling campaigns in 2016
Depth profiles of water column dissolved methane (CH4), density and biomass of zooplankton (specifically, Chaoborus spp.), and measurements of methane extracted from Chaoborus spp. were collected from Beaverdam Reservoir, Vinton, VA, USA during two, 24-hr intensive sampling campaigns in fall 2016 (3-4 August and 16-17 September). The sampling campaign was designed to test the hypothesis that Chaoborus spp. can transport CH4 from the hypolimnion to the epilimnion of lakes and reservoirs as they migrate to the surface waters from the benthos at night in search of zooplankton prey, and results of the project are published in Carey et al. 2018. During both sampling events, depth profiles of water column methane and Chaoborus spp. density were collected at noon, dusk, midnight, 2 a.m., dawn, and noon the following day at a 1 m resolution. In addition, during the September sampling event depth profiles were collected 1 hour prior to and after dusk. Methane gas was extracted from live Chaoborus individuals at every depth and time point immediately after collection via gentle centrifugation in distilled water following McGinnis et al. 2017. REFERENCES: Carey, C.C., R.P. McClure, J.P. Doubek, M.E. Lofton, N.K. Ward, and D. Scott. 2018. Chaoborus spp. transport CH4 from the sediments to the surface waters of a eutrophic reservoir, but their contribution to water column CH4 concentrations and diffusive efflux is minor. Environmental Science & Technology. 52:1165-1173. DOI 10.1021/acs.est.7b04384 McGinnis, D. F., Flury, S., Tang, K. W., Grossart, H.-P. 2017. Porewater methane transport within the gas vesicles of diurnally migrating Chaoborus spp.: an energetic advantage. Scientific Reports. 7(44478) DOI 10.1038/srep44478
McMurdo Dry Valleys Lake Joyce near shore water column pressure and temperature
This data set includes the deployment of an anchored pressure transducer and suspended thermistor string in Lake Joyce, Pearse Valley, as part of a NASA Astrobiology: Exobiology and Evolutionary Biology project. Instruments were deployed prior to summer melt in December 2014 near a melt water stream and retrieved in December 2015. Thermistors were positioned in the fresh water lens under the ice cover, within the water column, and on the lake bottom. This dataset is funded through the NASA grant NNX13AI60G, with USAP event G-063. This project is not funded through the MCM LTER program. MCM LTER hosts this synergistic project.
MCR LTER: Coral Reef: Water Column: Particle sedimentation on the Forereef, Back Reef and Fringing Reef
This data package contains measurements of the sedimentation rate of particulate matter to the seafloor on the forereef, backreef and fringing reef of the north shore of Moorea, French Polynesia, during 2 to 4 seasons per year from August 2005 to January 2011. Measurements include estimates of the accumulation rate of particulate organic carbon (POC), particulate organic nitrogen (PON), and dry mass. Samples were collected with 2 different types of sediment traps. From August, 2005 to January 2008 samples were collected using plastic door matting placed in plastic trays 1 cm deep and 195.5 cm2 in area. From January, 2008 to January, 2011 samples were collected in plastic tubes 5.2 cm inside diameter and 17.5 cm high (21.26 cm2). During each sampling period 3 replicate traps were placed at random on the seafloor and retrieved approximately 24 hours later. See caveats to data interpretation in methods discussion.
MCR LTER: Coral Reef: Water Column: Zooplankton Composition and Abundance
This data package contains zooplankton abundance and taxonomic composition measured at 5 stations on the north shore of Moorea, French Polynesia: Forereef, Backreef, Fringing Reef, Cooks Bay, and Oceanic (5 km due north) from 2005 to 2010. Day time measurements over the reef were taken with a 30 cm, 200 μm mesh plankton net equipped with a slow speed General Oceanics Model 2030 flow meter. Nets were swum horizontally by a diver 1 m above the bottom at Forereef, Backreef and Fringing Reef sites. Daytime sampling at the Oceanic and Cooks Bay sites consisted of 0-50 m, 0-100 or 0-30 m vertical tows with a 30 cm, 200 μm mesh plankton net equipped with a standard General Oceanics Model 2030 flow meter. Nighttime sampling and some daytime sampling was done at the Forereef, Backreef and Fringing Reef sites using automated plankton pumps equipped with flow meters and 200 μm internal nets (described in Alldredge and King, 2009). These pumps sampled 75 cm above the bottom for 1 to 1.5 hours beginning at 11 pm local time. Nocturnal zooplankton abundance was sensitive to lunar phase. On some sampling dates pump samples were taken at the same depth in duplicate, or at several different depths simultaneously. The zooplankton time series was terminated when it became clear that the variability in zooplankton abundance over just 50 cm difference in depth over the reef was greater than the variability seasonally or even day to night (Alldredge and King, 2009). Alldredge AL and J M King 2009. Near-surface enrichment of zooplankton over a shallow back reef: Implications for coral reef planktivores. Coral Reefs 28:895-908. DOI: 10.1007/s00338-009-0534-4
Year 2003, 15 minute interval, water quality measurements of water column temperature, salinity, oxygen, and depth near the mouth of Plum Island Sound, Massachusetts
Year 2003, 15 minute measurements of water column temperature, salinity, oxygen and depth in Plum Island Sound at the Ipswich Bay Yacht Club, Ipswich, MA.
Year 2004, 15 minute interval, water quality measurements of water column temperature, salinity, oxygen, and depth near the mouth of Plum Island Sound, Massachusetts
Year 2004, 15 minute measurements of water column temperature, salinity, oxygen and depth in Plum Island Sound at the Ipswich Bay Yacht Club, Ipswich, MA.
Year 2005, 15 minute interval, water quality measurements of water column temperature, salinity, oxygen, and depth near the mouth of Plum Island Sound, Massachusetts
Year 2005, 15 minute measurements of water column temperature, salinity, oxygen and depth in Plum Island Sound at the Ipswich Bay Yacht Club, Ipswich, MA.
Year 2006, 15 minute interval, water quality measurements of water column temperature, salinity, oxygen, and depth near the mouth of Plum Island Sound, Massachusetts
Year 2006, 15 minute measurements of water column temperature, salinity, oxygen and depth in Plum Island Sound at the Ipswich Bay Yacht Club, Ipswich, MA.
Water column nitrate and ammonium concentrations, sediment oxygen, di-nitrogen (gas), nitrate, nitrite, ammonium, phosphate, and silicate flux from sealed, whole core incubations, Rowley River, Rowley, MA.
Tidal flats are critical components of coastal estuarine ecosystems characterized by high rates of benthic primary productivity and biogeochemical cycling. In order to investigate the impact of anthropogenic nutrient loading on tidal flat biogeochemistry we carried out a two-week fertilization experiment. Throughout the course of the study we conducted two light-dark, whole-core incubations and took measurements of three indicators of microphytobenthos activity in addition to quantifying the resident eastern mud snail (Ilyanassa obsoleta) population.
Water column chlorophyll concentrations associated with clam flat surveys during year 2010 in the Plum Island Sound estuary, Newbury, Rowley and Ipswich, MA.
Six to eight sites in the Plum Island Sound estuary , the mainstem of the Parker River and Rowley River, in areas close to where other clam samples were being taken for other studies, were selected for monthly chlorophyll sampling to determine the concentration of phytoplankton at these sites.
Hach, OTT RLS measurements of water column depth at 15 minute intervals in the lower Plum Island Sound off the Ipswich Bay Yacht Club pier, Ipswich, MA, year 2015
Measurements of water column depth at 15 minute intervals in Plum Island Sound at the Ipswich Bay Yacht Club, for year 2015. OTT radar level sensor (RLS) installed September 20, 2011 out of the water under the concrete pad on the Ipswich Bay Yacht Club pier, Ipswich, MA. RLS was mounted so that continuous year round measurements can be conducted without the concern of ice flows damaging the sensor.
Year 2014, 15 minute interval, water quality measurements of water column temperature, salinity, oxygen, and depth near the mouth of Plum Island Sound, Massachusetts
Year 2014, 15 minute measurements of water column temperature, salinity, oxygen and depth in Plum Island Sound at the Ipswich Bay Yacht Club, Ipswich, MA.
Year 2015, 15 minute interval, water quality measurements of water column temperature, salinity, oxygen, and depth near the mouth of Plum Island Sound, Massachusetts
Year 2015, 15 minute measurements of water column temperature, salinity, oxygen and depth in Plum Island Sound at the Ipswich Bay Yacht Club, Ipswich, MA.
Hach, OTT RLS measurements of water column depth at 15 minute intervals in the lower Plum Island Sound off the Ipswich Bay Yacht Club pier, Ipswich, MA, year 2016
Measurements of water column depth at 15 minute intervals in Plum Island Sound at the Ipswich Bay Yacht Club, for year 2016. OTT radar level sensor (RLS) installed September 20, 2011 out of the water under the concrete pad on the Ipswich Bay Yacht Club pier, Ipswich, MA. RLS was mounted so that continuous year round measurements can be conducted without the concern of ice flows damaging the sensor.
Year 2016, 15 minute interval, water quality measurements of water column temperature, salinity, oxygen, and depth near the mouth of Plum Island Sound, Massachusetts
Year 2016, 15 minute measurements of water column temperature, salinity, oxygen and depth in Plum Island Sound at the Ipswich Bay Yacht Club, Ipswich, MA.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.