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30,334 results for “Responsiveness”
Data for the manuscript 'Biological response to the interaction of a mesoscale eddy and the river plume in the northern South China Sea'
<p>Satellite data includes daily sea-level anomaly from AVISO, daily surface chlorophyll a data from OC-CCI and sea surface salinity obtained from SMAP. Model simulated daily current, temperature, salinity, chlorophyll and nitrate concentration for three experiments (control, case1 and case2) from our coupled physical-biological model of the South China Sea . For chlorophyll and nitrate concentration, the dataset also includes the 16-day averaged budget terms along section S1. The modeled lagrangian particl tracking data is also avaiable. And all data and matlab scripts used to draw Fig. 1 to Fig. 10 are in Figure_data.rar file.</p>
Dataset for "Analytic High-order Geometric Derivatives with Polarizable Embedding in a Response Function Framework"
<p>This dataset contains data for the article "Analytic High-order Geometric Derivatives with Polarizable Embedding in a Response Function Framework"</p>
South African University Responses to Transformation
<p>Dataset describing how universities in South Africa have responded to demands for transformation. Data are for 2018 or most recent year. Fields include: University; Organisational structure for transformation; URL; Institutional transformation plan [ITP]; Most recent year; Key transformation areas or goals in ITP; Other documents with transformation plans, reports, targets; Measurable targets [Y, N]; Targets for no. or % of black students [Year]; Targets for no. or % of black academic staff [Year]</p>
Datasets supporting "Enhanced climate response to ozone depletion from ozone-circulation coupling"
<p>This data set is prepared to support the manuscript entitled "Enhanced climate response to ozone depletion from ozone-circulation coupling" by Lin end Ming, which is under review for Journal of Geophysical Research. The data set includes the following contents:</p> <p>1. Zonal mean monthly mean fields for selected variables from the simulations shown in the manuscript.</p> <p>2. The coefficients used for O3Tracer simulation described in the manuscript.</p>
Characterization of the microbiome and immune response in corals with chronic Montipora white syndrome.
<p>Complete code and data files for the Motipora White Syndrome paper. Run in Qiime2 2020.11, mostly on the command line.</p>
Prioritization of cell types responsive to biological perturbations in single-cell data with Augur
<p>Processed and analysis-ready input data discussed in our Augur procedures.</p>
Supplementary Materials for "Transcriptome responses to heat and cold stress in prepupae of Trichogramma chilonis"
<p>Prepupae of <em>T. chilonis</em> were exposed to 10 (T1), 25 (T2), and 40°C (T3) for 4 h. Transcriptome of each group was sequenced. Comparison analysis was further performed to explore the molecular response to temperature stresses. These supplementary materials could provide us with a comprehensive view of the molecular mechanisms of <em>T. chilonis</em> in response to temperature stresses.</p>
Data from: Biomass responses of widely and less-widely naturalized alien plants to artificial light at night
<p>Artificial light at night has rapidly increased during the last century, and could potentially affect many ecological processes, from individuals via communities to entire ecosystems. Recent research has shown that artificial light at night may not only affect the behavior of animals but also growth of plants and vegetation composition. However, it is not known yet whether artificial light at night may also affect other global change components such as plant invasions. </p> <p>Here, we tested how naturalized alien plants respond to artificial light at night, and particularly whether widely naturalized species differ from less-widely naturalized species in their response to artificial light at night. We grew nine taxonomically related pairs of widely naturalized and less-widely naturalized species alone and in competition, with native plants with and without artificial light at night.</p> <p>We found that in the competition treatment, artificial light at night significantly increased the total biomass production per pot, but not the biomass ratio between the naturalized alien plants and the native competitors. Interestingly, although the less-widely naturalized species produced overall significantly less biomass than the widely naturalized species, there was a trend that the less-widely naturalized species increased their biomass more strongly in response to artificial light at night than the widely naturalized species did (<i>P</i> = 0.07).<b> </b></p> <p>Synthesis. Our study shows that although widely naturalized plants produce more biomass than less-widely naturalized plants across different environmental conditions, they took less advantage of artificial light at night. This suggests that artificial light at night might lead to increased spread of currently less-widely naturalized species, at least when artificial light at night continues to increase.</p>
Spatial modulation of visual responses arises in cortex with active navigation
<p>During navigation, the visual responses of neurons in mouse primary visual cortex (V1) are modulated by the animal's spatial position. Here we show that this spatial modulation is similarly present across multiple higher visual areas but negligible in the main thalamic pathway into V1. Similar to hippocampus, spatial modulation in visual cortex strengthens with experience and with active behavior. Active navigation in a familiar environment, therefore, enhances the spatial modulation of visual signals starting in the cortex.</p>
Classification of pseudocalcium visual responses from mouse retinal ganglion cells
<p>The dataset includes spike data of 9 different recordings from mouse retina ganglion cells and the <em>Pseudocalcium </em>traces after convolving spikes with OGB kernel.</p>
Fire-driven behavioral response to smoke in a Mediterranean lizard
<p>The evolutionary role of fire in animals has been poorly explored. Reptiles use sensory cues such as smell (chemoreception) to detect threats and flee. In Mediterranean ecosystems, fire is a threat faced by reptiles. We hypothesized that the Mediterranean lizard <i>Psammodromus algirus</i> recognizes the threat of fire by detecting the smoke, which triggers a behavioral response that enhances survival in fire-prone ecosystems. We predicted that lizards from fire-prone ecosystems will be more sensitive to fire stimulus than those from ecosystems that rarely burn. We conducted a terrarium experiment in which lizards from habitats with contrasted fire regimes (fire-prone vs. non-fire-prone) were exposed to smoke vs. control (false smoke) treatment. We found that in populations from fire-prone habitats, more lizards reacted to smoke, and their behavioral response was more intense than in lizard populations from non-fire-prone habitats. Our results suggest that an enhanced response to smoke may be adaptive in lizards from fire-prone ecosystems as it increases the chance for survival. We provide evidence that fire is likely an evolutionary driver shaping behavioral traits in lizard populations exposed to frequent wildfires. Understanding ecological and evolutionary processes shaping animal populations is relevant for species conservation in a changing fire regime world.</p>
Dynamic physiological and transcriptome changes reveal a po-tential relationship between the circadian clock and salt stress response in Ulmus pumila
<p>Despite the important role the circadian clock plays in numerous critical physiological responses in plants, such as hypocotyl elongation, leaf movement, stomatal opening, flowering, and stress responses, there have been no investigations into the effect of the circadian clock on physiological and transcriptional networks under salt stress. <em>Ulmus pumila</em> L.—a major tree species used for timber, shelter, food, medicine, fodder, and ecological protection—has been reported to tolerate 100~150 mM NaCl treatment. We performed a time-course physiological and transcriptome analysis of 2-years-old <em>U. pumila</em> seedlings under salt treatment to dissect the physiological regulation and potential relationship between the circadian clock and the salt stress response. Seedlings in 150 mM NaCl treatment exhibited salt-induced physiological enhancement compared to the control group. A total of 7,009 unigenes were identified under salt stress, of which 283 unigenes were identified as circadian rhythm genes and 16 unigenes were differentially expressed (circadian rhythm-related DEGs). Further analysis of dynamic expression changes revealed that DEGs involved in four crucial pathways—photosynthesis, thiamine metabolism, abscisic acid synthesis and metabolism, and the hormone-MAPK signal crosstalk pathway—are closely related to the circadian clock. Finally, we constructed a co-expression network between the circadian clock and these four crucial pathways. Our results help shed light on the molecular link between the circadian clock and salt stress tolerance in <em>U. pumila</em>.</p>
Data from: Herbivory and eutrophication mediate grassland plant nutrient responses across a global climatic gradient
Plant stoichiometry, the relative concentration of elements, is a key regulator of ecosystem functioning and is also being altered by human activities. In this paper we sought to understand the global drivers of plant stoichiometry and compare the relative contribution of climatic vs. anthropogenic effects. We addressed this goal by measuring plant elemental (C, N, P and K) responses to eutrophication and vertebrate herbivore exclusion at eighteen sites on six continents. Across sites, climate and atmospheric N deposition emerged as strong predictors of plot‐level tissue nutrients, mediated by biomass and plant chemistry. Within sites, fertilization increased total plant nutrient pools, but results were contingent on soil fertility and the proportion of grass biomass relative to other functional types. Total plant nutrient pools diverged strongly in response to herbivore exclusion when fertilized; responses were largest in ungrazed plots at low rainfall, whereas herbivore grazing dampened the plant community nutrient responses to fertilization. Our study highlights (1) the importance of climate in determining plant nutrient concentrations mediated through effects on plant biomass, (2) that eutrophication affects grassland nutrient pools via both soil and atmospheric pathways and (3) that interactions among soils, herbivores and eutrophication drive plant nutrient responses at small scales, especially at water‐limited sites.
No evidence for divergence in male harmfulness or female resistance in response to changes in the opportunity for dispersal
The outcome of sexual conflict can depend on the social environment, as males respond to changes in the inclusive fitness payoffs of harmfulness and harm females less when they compete with familiar relatives. Theoretical models also predict that if limited male dispersal predictably enhances local relatedness while maintaining global competition, kin selection can produce evolutionary divergences in male harmfulness among populations. Experimental tests of these predictions, however, are rare. We assessed rates of dispersal in female and male seed beetles Callosobruchus maculatus, a model species for studies of sexual conflict, in an experimental setting. Females dispersed significantly more often than males, but dispersing males travelled just as far as dispersing females. Next, we used experimental evolution to test whether limiting dispersal allowed the action of kin selection to affect divergence in male harmfulness and female resistance. Populations of C. maculatus were evolved for 20 and 25 generations under one of three dispersal regimens: completely free dispersal, limited dispersal, and no dispersal. There was no divergence among treatments in female reproductive tract scarring, ejaculate size, mating behaviour, fitness of experimental females mated to stock males, or fitness of stock females mated to experimental males. We suggest that this is likely due to insufficient strength of kin selection rather than a lack of genetic variation or time for selection. Limited dispersal alone is therefore not sufficient for kin selection to reduce male harmfulness in this species, consistent with general predictions that limited dispersal will only allow kin selection if local relatedness is independent of the intensity of competition among kin.
Diversity of response and effect traits provides complementary information about avian community dynamics linked to ecological function
<p>Functional diversity metrics based on species traits are widely used to investigate ecosystem functioning. In theory, such metrics have different implications depending on whether they are calculated from traits mediating responses to environmental change (response traits) or those regulating function (effect traits), yet trait choice in diversity metrics is rarely scrutinized. Here, we compile effect and response traits for British bird species supplying two key ecological services – seed dispersal and insect predation – to assess the relationship between functional diversity and both mean and stability of community abundance over time. As predicted, functional diversity correlates with stability in community abundance of seed dispersers when calculated using response traits. However, we found a negative relationship between functional diversity and mean community abundance of seed dispersers when calculated using effect traits. Subsequently, when combining all traits together, we found inconsistent results with functional diversity correlating with reduced stability in insectivores, but greater stability in seed dispersers. Our findings suggest that trait choice should be considered more carefully when applying such metrics in ecosystem management.</p>
Data from: The roots of the drought: hydrology and water uptake strategies mediate forest-wide demographic response to precipitation
Drought-induced tree mortality is expected to increase globally due to climate change, with profound implications for forest composition, function and global climate feedbacks. How drought is experienced by different species is thought to depend fundamentally on where they access water vertically below ground, but this remains untracked so far due to the difficulty of measuring water availability at depths at which plants access water (few to several tens of meters), the broad temporal scales at which droughts at those depths unfold (seasonal to decadal), and the difficulty in linking these patterns to forest-wide species-specific demographic responses. We address this problem through a new eco-hydrological framework: we used a hydrological model to estimate belowground water availability by depth over a period of two decades that included a multi-year drought. Given this water availability scenario and 20yr long-records of species-specific growth patterns, we inversely estimated the relative depths at which 12 common species in the forest accessed water via a model of water-stress. Finally, we tested whether our estimates of species relative uptake depths predicted mortality in multi-year drought. The hydrological model revealed clear belowground niches as precipitation was decoupled from water availability by depth at multi-annual scale. Species partitioned the hydrological niche by diverging in their uptake depths and so in the same forest stand, different species experienced very different drought patterns, resulting in clear differences in species-specific growth. Finally, species relative water uptake depths predicted species mortality patterns after the multi-year drought. Species that our method ranked as relying on deeper water were the ones that had suffered from greater mortality, as the zone from which they access water took longer to recharge after depletion. This research changes our understanding of how hydrological niches operate for trees with a trade-off between realized growth potential and survival under drought with decadal scale return time. The eco-hydrological framework highlights the importance of species-specific below ground strategies in predicting forest response to drought. Applying this framework more broadly may help us better understand species-coexistence in diverse forest communities and improve mechanistic predictions of forests productivity and compositional change under future climate.
Data from: Parental response to intruder females altered by ornamentation and mate quality in a biparental fish
In many monogamous species females behave aggressively toward other females, as they may threaten their exclusive access to paternal resources. However, in species with a high degree of breeding asynchrony not all females are true reproductive rivals. Female ornamentation that advertises sexual receptivity is a possible mechanism whereby parental females could assess the potential threat of rival females and attack only those which could challenge their mating status. Convict cichlids (Amatitlania siquia) are sexually dichromatic, monogamous fish that exhibit biparental care. Females develop gold ventral coloration when reproductively receptive and actively court males. We presented breeding pairs of convict cichlids with confined conspecific females to investigate whether parental response was affected by the intruder's reproductive status. We also investigated whether differences in partner quality within breeding pairs mediated the response to intruders, as mate quality influences both intra- and intersexual dynamics in many monogamous species. We found parental females responded more aggressively to reproductive intruders and that parental females mated to high quality males decreased the aggression they directed at general brood predators during the reproductive intruder presentation. Contrary to our predictions, we also found that males behaved aggressively toward reproductive intruders, particularly when paired with small females. Our results indicate that both parents engage in pair-bond defense and that differences in partner quality determine the level of aggression directed at extra-pair reproductive females. These findings suggest that when biparental care greatly increases offspring survival, reproductive success for both sexes may be maximized by cooperation and coordination, rather than conflict.
Data from: Plant community response to switchgrass (Panicum virgatum) population source in establishing prairies
Ecological restoration and revegetation efforts entail the translocation of native plant populations. Risks associated with these efforts include failure of translocated populations to establish or, conversely, such strong establishment that they excessively dominate the recipient community. The role that selective breeding plays in mediating these risks is unclear but of increasing importance as efforts to restore and establish multifunctional grasslands also increase. In a three-year, spatially replicated study, we seeded experimental prairie communities with either domesticated (cultivar) or undomesticated strains of Panicum virgatum (switchgrass), a North American C4 species under development as a biomass crop. We evaluated the composition, performance, and diversity of the recipient plant communities and compared the performance of cultivar and undomesticated switchgrass in those communities. We found little evidence that switchgrass population source affected community response. Switchgrass cultivars modestly exceeded undomesticated strains with respect to stand establishment, third-year stand density, and aboveground biomass; effect size and significance differed among sites. Our results suggest that including cultivars in ecological restorations and multifunctional grasslands may enhance success of switchgrass establishment with little risk of impairing the composition or diversity of plant communities for up to three years, as reflected in the measures used here. However, the incorporation of undomesticated switchgrass into multifunctional grasslands may enhance landscape-scale genetic variation and mitigate risks associated with gene flow between translocated and local wild switchgrass populations; more research on these dynamics is needed.
Data from: The importance of functional responses among competing predators for avian nesting success
1. The relationship between the rate of predation and prey abundance is an important component of predator-prey dynamics. However, functional responses are less straightforward when multiple predators compete for shared prey. Interactions among competing predators can reduce or enhance effects of predation on prey populations. Because many avian populations experience high rates of nest predation, understanding the role of specific predators on nest mortality will lead to more informed conservation and management strategies which attempt to increase productivity by removing certain predators or managing habitat to limit their impact. 2. Our goal was to evaluate effects of specific predators and the influence of nest abundance on nest mortality. 3. We monitored snowy plover Charadrius nivosus nests across 7 years at two study areas in Utah, USA with remote cameras. We modeled predator-specific hazard rates for nest mortality in a Bayesian framework to assess relationships between competing predators and the role of nest abundance on predator-specific hazard rates. 4. We found that hazard rates for nest mortality by gulls Larus spp. decreased with increasing nest abundance, whereas nest mortality by foxes Vulpes spp. and ravens Corvus corax initially increased, indicating that dietary switching may occur when nests become more abundant. Nest mortalities of specific predators were often not independent and ranged between compensatory (e.g., mammalian mesopredators), and superadditive (e.g., avian predators) across the breeding season. 5. The non-independence between nest mortalities suggests that reductions in some predators may not translate to additive increases in overall nest success. Analyses of cause-specific mortality are rarely applied to avian nests, but examination of interacting impacts among competing predators on nest survival may provide insight into specific drivers of avian population dynamics.
Data from: Disentangling the steps of the infection process responsible for juvenile disease susceptibility
<p>1. Juveniles of diverse host taxa, including vertebrates, invertebrates and plants, are more susceptible to parasitic infections than adults, a phenomenon still poorly understood.</p> <p>2. To shed light on the mechanisms underlying this host age effect, we investigated its expression during different steps of the infection process of a bacterial parasite of the planktonic crustacean <i>Daphnia</i>. To do so, we infected juvenile and adult <i>Daphnia magna</i> with the bacterium <i>Pasteuria ramosa</i> and monitored parasite development in experiments specific to different steps of the infection process.</p> <p>3. We did not find an effect of host age on parasite attachment, but found a strong increase in the penetration time of the parasite into hosts with increasing age. Host age at exposure also affected within-host parasite development, which was delayed in old adult <i>D. magna</i> in comparison to young adults and juveniles. Furthermore, parasite clearance was observed only in old adults, suggesting that old hosts have a better immune response than young adults and juveniles.</p> <p>4. Our results reveal a step-specific effect of host age on disease progression, giving support for different hypotheses explaining high juvenile disease susceptibility. While these mechanisms are likely to work independently from each other, earlier steps of the infection process influence later steps, and thus may respond more readily to selection than later steps.</p> <p>5. Our results also highlight that clearance can occur both during early parasite establishment and surprisingly at progressed infection phases, an undocumented phenomenon in invertebrates, where late infections are often considered chronic, lasting until host death.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.