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On the predictability of phenotypic divergence in geographic isolation
<p><span>Do related populations that are separated by barriers predictably evolve differences from one another over time, or is such divergence idiosyncratic and unpredictable? We test these </span><span>alternatives by investigating patterns of trait evolution for 54 sister pairs of Andean forest birds that live in similar environments on either side of the arid Marañón Gap, a strong dispersal barrier for humid montane species. We measured divergence in both sexual (song and plumage) and ecological (beak size and beak shape) traits. Sexual traits evolve in a clock-like fashion, with trait divergence positively correlated with genetic distance (r = 0.6 to 0.7). In contrast, divergence in ecological traits is uncorrelated or only loosely correlated with genetic distance (r = 0.0 to 0.3). Thus, for geographically isolated Andean montane forest birds that live in similar environments, divergence is predictable in sexual traits, but not for ecological traits. This means that sexual trait divergence occurs independently of adaptive ecological divergence within the mega-diverse tropical Andean avifauna. Last, we show that variation in genetic divergence across a biogeographic barrier is associated</span><span> with traits that are proxies for species' opportunities for dispersal (low elevation limit and elevational niche breadth), but not with traits that are proxies for species' dispersal abilities (hand-wing index and foraging strata).</span></p>
Figure 15 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 15. Igarapé Mutum, tributary of Rio Juma, Rio Aripuanã Basin, Apuí, Amazonas, Brazil, type-locality of Poecilocharax rhizophilus sp. nov. Inset details the microenvironment where P. rhizophilus sp. nov. was captured.
Figure 12 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 12. Poecilocharax rhizophilus sp. nov.: A, holotype, male, 20.3 mm SL, MZUSP 121652; B, paratype, male, 23.1 mm SL, MZUSP 121651; C, paratype, female, 23.3 mm SL, MZUSP 121651.
Figure 10 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 10. Type-locality (red square) of Poecilocharax callipterus sp. nov. and P. rhizophilus sp. nov. (blue dot), tributary of the Rio Juma, Rio Aripuanã drainage, Rio Madeira Basin, Apuí, Amazonas, Brazil.
Figure 8 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 8. Superficial neuromasts (white arrows) on lateral body scales of Poecilocharax callipterus sp. nov., MZUSP 117568, paratype, 29.4 mm SL.
Figure 7 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 7. Poecilocharax callipterus sp. nov., lateral line with a single perforated scale, MZUSP 117568, paratype, 27.5 mm SL.
Figure 4 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 4. SEM photograph of the of neurocranium of Poecilocharax callipterus sp. nov. in frontal view, paratype, male, 28.1 mm SL. Epiphyseal branch of the supraorbital laterosensory canal (EP), foramina (FO), frontal bone (FR), mesethmoid (ME) and parietal branch of supraorbital laterosensory canal (P).
Figure 3 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 3. Poecilocharax callipterus sp. nov.: A, holotype, male, 30.9 mm SL, MZUSP 121653; B, paratype, female, 27.7 mm SL, MZUSP 117568.
Figure 11 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 11. Tributary of Rio Canadá, Rio Juma drainage, Rio Aripuanã Basin, Apuí, Amazonas, Brazil, type-locality of Poecilocharax callipterus sp. nov. In detail the microenvironment where P. callipterus sp. nov. was captured.
Figure 2 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 2. Results from ABGD analysis on Crenuchinae data shown in the IB topology. Analyses were run with a minimum slope increase (X) of 1.0. Distances were calculated based on the Kimura 2-parameter (K80) model. Graphs indicate the histogram of distances (right, above) and ranked distances (right, below).
Figure 1 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 1. Abbreviated phylogenetic trees of Crenuchidae obtained in this study based on mitochondrial gene cytochrome c oxidase subunit I (COI, 666 bp), indicating the monophyly of Crenuchinae (highlighted) and the relationships among its representatives. A, Bayesian tree, numbers at branches are posterior probabilities; B, maximum likelihood tree, numbers at branches are bootstrap values. Values below 75% (-) are not shown.
Figure 6 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 6. Poecilocharax callipterus sp. nov., left medial view of premaxilla, maxilla and dentary, MZUSP 117568, paratype, male, 28.1 mm SL.
Figure 9 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 9. Poecilocharax callipterus sp. nov., immediately after capture, paratypes: A, male, 30.6 mm SL, MZUSP 121653; B, female, 27.2 mm SL, MZUSP 117568.
Figure 5 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 5. Infraorbital series of Poecilocharax callipterus sp. nov., depicting antorbital bone and infraorbitals 1–6, MZUSP 117568, paratype, male, 28.1 mm SL, left lateral view.
Figure 14 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 14. Poecilocharax rhizophilus sp. nov., immediately after capture. A, holotype, male, 20.3 mm SL, MZUSP 121652. Paratypes: B, male, 23.1 mm SL; C, female, 23.3 mm SL, MZUSP 121651.
Figure 13 in The monophyly of Crenuchinae and description of two new species of Poecilocharax (Teleostei: Crenuchidae) based on phenotypic and genotypic evidence
Figure 13. Poecilocharax rhizophilus sp. nov., medial view of premaxilla, maxilla and dentary, right side, MZUSP 121651, paratype, 16.5 mm SL.
Dataset related to article "BEHAVIORAL AND COGNITIVE PHENOTYPES OF PATIENTS WITH AMYOTROPHIC LATERAL SCLEROSIS CARRYING SOD1 VARIANTS"
<p><strong>ngs_analysis performedn as part of the study mentioned at title</strong></p>
Figure 6 in Subspecies at crossroads: the evolutionary significance of genomic and phenotypic variation in a wide-ranging Australian lizard (Ctenotus pantherinus)
Figure 6. Genotypic clustering and admixture in Ctenotus pantherinus. Bars depict the relative proportion of alleles in each individual corresponding to the inferred genotypic clusters (i.e. ancestry proportions of individuals). Pie charts on the map indicate the average ancestry proportions corresponding to each cluster at each site (based on all individuals at that site). The clusters closely match the sample composition and geographical distribution of major clades from the nuclear phylogenetic analysis (Fig. 5). Multicoloured pies indicate admixture among clusters.
Figure 2 in Subspecies at crossroads: the evolutionary significance of genomic and phenotypic variation in a wide-ranging Australian lizard (Ctenotus pantherinus)
Figure 2. Selected phenotypic characters examined in museum specimens of Ctenotus pantherinus and their variation. A, dorsal coloration (from left to right): typical ocellated pattern, vertebral stripe, longitudinal lines, hiatus of ocelli on the vertebral region and ocelli with thick dark borders. B, condition of the plantar scales: smooth, pyramidal and with a spiny projection. C, condition of the subdigital lamellae (yellow arrows): single broad keel, single fine keel and fine medial keel flanked by two smaller parallel keels. Variation among the character states shown was often near-continuous and difficult to categorize.
Figure 1. A in Subspecies at crossroads: the evolutionary significance of genomic and phenotypic variation in a wide-ranging Australian lizard (Ctenotus pantherinus)
Figure 1. A, Illustrative picture of C. pantherinus in life (subspecies C. p. ocellifer), courtesy of Eric Vanderduys. B, C, distributions of currently recognized Ctenotus pantherinus subspecies. B, presumed distributions of C. pantherinus subspecies as typically presented in field guides and taxonomic compendiums (based on Ehmann & Strahan, 1992; Storr et al., 1999). Subspecies are as follows: C. p. acripes (a), C. p. calx (c), C. p. ocellifer (o) and C. p. pantherinus (p). Note the disjunct distribution of C. p. acripes, whose type locality is on a Western Australian island (Barrow Island; arrow). C, sampling localities of 1464 voucher specimens split by subspecies assignment as in the original museum records (for details on how we compiled these data, see the Material and methods section). Note that subspecies ranges as commonly understood (B) often disagree with those suggested by museum records.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.