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2,152 results for “outputs”
Carbon Stocks of Individual Trees in African Drylands: Allometry and Output Data
This dataset provides allometrically-estimated carbon stocks of 9,947,310,221 tree crowns derived from 50-cm resolution satellite images within the 0 to 1000 mm/year precipitation zone of Africa north of the equator and south of the Sahara Desert. These data are presented in GeoPackage (*.gpkg) format and are summarized in Cloud-Optimized GeoTIFF (COG) format. An interactive viewer application developed to display these carbon estimates at the individual tree level across the study area is available at: https://trees.pgc.umn.edu/app. The analysis utilized 326,523 Maxar multispectral satellite images collected between 2002 to 2021 for the early dry season months of November to March to identify tree crowns. Metadata from satellite image processing across the study area are presented in Shapefile (*.shp) format. Additionally, field measurements from destructive harvests used to derive allometry equations are contained in comma-separated values (*.csv) files. These data demonstrate a new tool for studying discrete semi-arid carbon stocks at the tree level with immediate applications provided by the viewer application. Uncertainty of carbon estimates are +/- 19.8%.
NACP Regional: Supplemental Gridded Observations, Biosphere and Inverse Model Outputs
This data set contains standardized gridded observation data, terrestrial biospheric model output, and inverse model simulations that were compiled but not used in the North American Carbon Program (NACP) Regional Synthesis activities, thus the supplemental designation. The data set provides six (6) observation data packages (9 variables - MODIS LAI, MODIS FPAR, MODIS NDVI, MODIS EVI, FIA forest biomass, forest area, GPP Anomaly, NEE Anomaly, Reco Anomaly; 8 data files), output results from three terrestrial biosphere models (TBM) (14 variables; 214 files), and simulations from one inverse model (IM) (one variable; 1 file). To produce this data set, the NACP Modeling and Synthesis Thematic Data Center (MAST-DC) original data files were resampled to 1-degree spatial resolution for North American region (except for FIA Forest Biomass which was resampled to 0.5-degree resolution), interpolated into monthly or yearly temporal resolution, and reformatted into Climate and Forecast (CF) convention compatible netCDF format.
NACP MsTMIP: Global 0.5-degree Model Outputs in Standard Format, Version 1.0
This data set provides global gridded estimates of carbon, energy, and hydrologic fluxes between the land and atmosphere from 15 Terrestrial Biosphere Models (TBMs) in a standard format. Model estimates are at monthly and yearly time steps for the period 1900 to 2010, with a spatial resolution of 0.5 degree x 0.5 degree globally, excluding Antarctica.
ISLSCP II IGBP NPP Output from Terrestrial Biogeochemistry Models
This data set contains modeled annual net primary production (NPP) for the land biosphere from seventeen different global models. Annual NPP is defined as the net difference of annual carbon uptake (grams CO2/m2/yr) from the atmosphere through photosynthesis by the land vegetation and that lost back to the atmosphere through autotrophic and maintenance respiration. NPP is also related to the Net Ecosystem Exchange (NEE) of carbon accumulated by or lost from the surface by its vegetation and soils. NPP is NEE plus heterotrophic (decomposition) respiration of the vegetation and soils. Only NPP values are included in this data set as some models did not estimate NEE. Data for the mean, standard deviation and coefficient of variation of NPP for the 17 models are provided at spatial resolutions of 1.0 degree and 0.5 degrees. There are two compressed (*.zip) data files with this data set.
Daily SnowModel Outputs Covering the ABoVE Core Domain, 3-km Resolution, 1980-2020
This dataset provides daily SnowModel simulation outputs on a 3-km grid for the period 1 September 1980 through 31 August 2020, covering the Core ABoVE Domain. The daily outputs include: air temperature (deg C), relative humidity (%), wind speed (m/s), wind direction (deg from True North), total precipitation (rain+snow) (m), rainfall (m), snowfall (m), snow melt (m), snow sublimation (m), runoff (m), surface temperature (deg C), bulk snowpack thermal resistance (K/W), snow depth (m), snow density (kg/m3), and snow-water-equivalent (SWE) depth (m). Model data inputs included land cover and topography, ground-based observations of snow, remote sensing observations of snow from satellites and aircraft, and meteorological forcing data from weather stations and reanalysis data. The SnowModel includes the processing modules MicroMet, Enbal, SnowDunes, SnowAssin, SnowPack, and SnowTran-3D. The data are provided in NetCDF format.
Delta-X: Calibrated ANUGA Hydrodynamic Outputs for the Atchafalaya Basin, MRD, LA
This dataset provides ANUGA hydrodynamic modeling results and input run-scripts for the Atchafalaya basin in the Mississippi River Delta in southern Louisiana, USA, during three windows of time corresponding to the Delta-X and Pre-Delta-X field campaigns in fall 2016, spring 2021, and fall 2021. ANUGA is a 2D depth-integrated hydrodynamic model which uses the Finite Volume Method (FVM) to numerically solve the shallow water momentum and continuity equations for fluid flow in broad-scale geophysical systems. Each iteration of the model was extensively calibrated using a database of in-situ and remotely-sensed observations, including about 54 water level gauges, numerous water surface profiles collected by AirSWOT or lidar, and water level change measurements derived from UAVSAR. The model was forced using observational data collected from NOAA and USGS, and the model mesh was specifically designed to capture channel-island connectivity using high-resolution Planet Labs imagery spanning over a decade. In total, over a month of simulation outputs are included in this dataset, covering different seasons and hydrological conditions in the Atchafalaya and Wax Lake Delta systems. These model outputs can be leveraged with other Delta-X datasets to provide contextual information about water levels or flow velocities at different times or locations within the Atchafalaya basin, and the model codes provided can be used to simulate additional time periods for further analysis in this region. Model outputs are presented in NetCDF (*.nc) format and run-scripts are in Python (*.py) or contained in compressed (*.zip) file format.
ATom: In Situ Tropical Aerosol Properties and Comparable Global Model Outputs
This dataset provides (1) the results of in situ aerosol particle property measurements collected over remote tropical areas of both Pacific and Atlantic Oceans during the NASA airborne Atmospheric Tomography (ATom) campaigns for ATom-1 and ATom-2 and (2) modeled outputs of comparable aerosol properties, atmospheric chemistry and meteorology at 70 m resolution from four chemical-transport models matched to the location and time of the aircraft measurements.
SMODE L4 ROMS Model Output Version 1
This dataset contains output data files for the Sub-Mesoscale Ocean Dynamics Experiment (S-MODE) Regional Ocean Modelling System (ROMS) model runs. S-MODE aims to understand how ocean dynamics acting on short spatial scales influence the vertical exchange of physical and biological variables in the ocean. Model output is limited to the SMODE field campaign region and uses 1hr ERA5 atmospheric forcings. ROMS model output files are provided in NetCDF format. Users should note that these files are very large and are encouraged to do analysis in the cloud rather than downloading.
NACP Site: Terrestrial Biosphere Model Output Data in Original Format
This data set contains the original model output data submissions from the 24 terrestrial biosphere models (TBM) that participated in the North American Carbon Program (NACP) Site-Level Synthesis. The model teams generated estimates for, but not limited to, a minimum of six variables, including gross primary productivity (GPP), net ecosystem exchange (NEE), leaf area index (LAI), ecosystem respiration (Re), latent heat flux (LE), and sensible heat flux (H) for each of 47 selected eddy covariance flux tower sites across North America. Participating modeling teams followed the NACP Site Synthesis Protocol (site_synthesis_protocol_v7.pdf), which covers procedures, plans, and infrastructure for the site-level analyses. File format and units conversions of several data submissions were made by the MAST-DC to produce NetCDF files of consistent content and structure for all 24 TBM outputs. The model outputs are structured as described in Appendix A: Model Output Variables, of the Site Synthesis Protocol. In addition, MAST-DC processed these original model submissions to derive uniquely processed and formatted data files for model inter-comparison and evaluation (NACP Site: Terrestrial Biosphere Model and Aggregated Flux Data in Standard Format). This related data set provides GPP, NEE, LAI, Re, LE, and sensible heat (H) model output variables at the native half-hourly time step, and in daily, monthly, and annual aggregations. The related data set also contains gap-filled observations and total uncertainty estimates at the same time steps.There are 24 compressed (*.zip) files with this data set -- one file for each model. When expanded, the .zip files contain model output data files for flux tower sites in NetCDF and some in text formats.
CLPX-Model: Rapid Update Cycle 40km (RUC-40) Model Output Reduced Data, Version 1
The Rapid Update Cycle, version 2 at 40km (RUC-2, known to the Cold Land Processes community as RUC40) model is a Mesoscale Analysis and Prediction System (MAPS) data set that uses the Model Output Reduced Data Set (MORDS) version. This data set has been subsetted for use in the Cold Land Processes Field Experiment (CLPX).
NACP Regional: Original Observation Data and Biosphere and Inverse Model Outputs
This data set contains the originally-submitted observation measurement data, terrestrial biosphere model output data, and inverse model simulations that various investigator teams contributed to the North American Carbon Program (NACP) Regional Synthesis activities. The data set provides nine (9) data packages of remote sensing and ground observation measurements (OM) (MODIS gross primary productivity (GPP), MODIS net primary production (NPP), MODIS fraction of photosynthetically active radiation (fPar), MODIS leaf area index (LAI), MODIS enhanced vegetation index (EVI), MODIS normalize difference vegetation index (NDVI), Forest Inventory and Analysis (FIA) forest biomass, National Agricultural Statistics Service (NASS) crop NPP, and Flux Anomaly). The data set also provides data packages of simulation results from 19 terrestrial biosphere models (TBM) and eight (8) inverse models (IM). The data packages are respectively OM, TBM, and IM data files listed in Tables 4-6. Each OM, TBM, and IM data package contains all of the original data (and documentation, if any) that the NACP Modeling and Synthesis Thematic Data Center (MAST-DC) acquired or received. These originally-submitted data were processed by the MAST-DC to produce the three standardized gridded data sets of carbon flux for inter-comparison purposes (see Related Data Products below). These original data and documentation are provided to allow users of the standardized gridded data products to be able to trace back to the data origins when needed. The Data Center (ORNL DAAC) transformed some of the originally-submitted data files to file formats that are more suitable for long-term archiving. For example, *.xlsx files were saved as *.csv, ERDAS Imagine files were converted to GeoTIFFs, and MATLAB files were converted to GeoTIFF and NetCDF formats as appropriate. Files received in NetCDF, GeoTIFF, and HDF formats were not transformed.
S-MODE NCOM Model Output Version 1
This dataset contains model output from the Navy Coastal Ocean Model (NCOM) run during the Sub-Mesoscale Ocean Dynamics Experiment (S-MODE) field campaign. S-MODE aims to understand how ocean dynamics acting on short spatial scales influence the vertical exchange of physical and biological variables in the ocean. NCOM model output consists of daily files during the deployment dates of the pilot campaign in Fall 2021, IOP1 in Fall 2022, and IOP2 in Spring 2023. Data consists of ocean variables such as salinity, sea water temperature, water depth, and surface wind stress, and are available in netCDF format.
ATom: Global Modeling Initiative (GMI) Chemical Transport Model (CTM) Output
This dataset contains Global Modeling Initiative (GMI) Chemical Transport Model (CTM) outputs from the four Atom campaigns. GMI simulations of the ATom flight periods have a horizontal resolution of 1.0 x 1.25 degrees, with output every 15 minutes. The ICARTT files are generated by spatially and temporally interpolating the output to the ATom flight track. Vertical interpolation is linear in log-pressure. The netCDF files provide three-dimensional (3D) GMI simulation output for the region surrounding the flight track every 15 minutes at the original model resolution. GMI is a 3-D CTM that includes full chemistry for both the troposphere and stratosphere. GMI simulates the concentrations of many of the species measured during ATom.
NEMS/Nimbus-5 Level 2 Output Data V001 (NEMSN5L2) at GES DISC
NEMSN5L2 is the Nimbus-5 or Nimbus-E Microwave Spectrometer (NEMS) Level-2 Output Data product and contains surface reflectivity, water vapor, liquid water, layer thickness, temperature at standard pressure levels, surface brightness temperature, and surface type information, as well as the input antenna and brightness temperatures at 5 microwave channels (H2O channels 22.235 and 31.4 GHz, and O2 channels 53.65, 54.9 and 58.8 GHz). The NEMS instrument views the nadir with a footprint is a 180-km diameter circle on the earth's surface. Data are available for the time period from 1972-12-17 to 1973-10-31 with data for about five days stored in a single binary data file.The principal investigator for the NEMS experiment was David H. Staelin from MIT. An advanced version of this instrument, the Scanning Microwave Spectrometer (SCAMS) was flown on the subsequent Nimbus-6 satellite.
ATom: CAM-chem/CESM2 Model Outputs Along Flight Tracks, 2016-2018
This dataset contains CAM-chem (Community Atmosphere Model with Chemistry) model outputs along ATom flight tracks. CAM-chem is a component of the Community Earth System Model Version 2 (CESM2) and is used for simulations of global tropospheric and stratospheric atmospheric composition and for studies of chemistry-climate interactions. In general, CAM-chem uses the MOZART chemical mechanism, with various choices of complexity for tropospheric and stratospheric chemistry. For this dataset, CAM-chem used the MOZART-TS1 chemical mechanism, and the model was nudged to reanalysis meteorology from MERRA2.
Delta-X: ANUGA Hydrodynamic Outputs, Atchafalaya and Terrebonne, MRD, USA
This dataset comprises the primary inputs and outputs from the ANUGA hydrodynamic model for spring 2021 (2021-03-20 to 2021-04-04). These dates align with the 2021 Delta-X Spring Campaign. Data cover the Atchafalaya and Terrebonne basins of the Mississippi River Delta in southern Louisiana, USA. ANUGA is a 2D depth-integrated hydrodynamic model which uses the Finite Volume Method (FVM) to numerically solve the shallow water momentum and continuity equations for fluid flow in broad-scale geophysical systems. The inputs consist of a modified digital elevation (DEM) model, a spatial classification of the friction coefficient modified, and the model's unstructured grid with boundary condition locations. The model's outputs include two weeks of predictions of water levels and mean horizontal velocities at each mesh node at a 30-minute time step. Outputs are provided in NetCDF format, and inputs are provided in GeoTIFF and comma separated values (CSV) format. Also included are MP4 videos (*.mp4) that provide visual summaries of the outputs.
NACP Regional: Gridded 1-deg Observation Data and Biosphere and Inverse Model Outputs
This data set contains standardized gridded observation data, terrestrial biosphere model output data, and inverse model simulations of carbon flux parameters that were used in the North American Carbon Program (NACP) Regional Synthesis activities. The data set provides five observation data files (MODIS GPP, MODIS NPP, FIA forest biomass/forest area, NASS crop NPP, and NASS agricultural land fraction) and simulation results from 18 terrestrial biosphere models (TBM) (28 variables; 114 files) and seven inverse models (IM) (two variables; 8 files). To produce this data set, the NACP Modeling and Synthesis Thematic Data Center (MAST-DC) resampled original model simulation results and observation measurement data to 1-degree spatial resolution for North American region, interpolated into monthly or yearly temporal resolution, and reformatted into Climate and Forecast (CF) convention compatible netCDF format. This data set is related to two other processed regional data sets (i.e., NACP Regional: Supplemental Gridded Observations, Biosphere and Inverse Model Outputs; and NACP Regional: National Greenhouse Gas Inventories and Aggregated Gridded Model Data) and the originally-submitted NACP Regional: Original Observation Data and Biosphere and Inverse Model Outputs.
Next genereration sequencing reveals that CNAs associated with cyclin E overexpression tranlate into changes in transcriptional output.
GEO Series GSE136078. Homo sapiens. 13 samples. Type: Expression profiling by high throughput sequencing.
Genetically distinct parallel pathways in the entopeduncular nucleus for limbic and sensorimotor output of the basal ganglia
GEO Series GSE95133. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Drosophila epidermal cells are intrinsically mechanosensitive and modulate nociceptive behavioral outputs
GEO Series GSE284380. Drosophila melanogaster. 55 samples. Type: Expression profiling by high throughput sequencing.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.