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Figure 11 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 11 The frequency distribution of changes to the craniomandibular functional modules (sensu Werneburg et al., 2019) in the growth series of Tyrannosaurus rex. Growth stages are along the x-axis (corresponding to the numbered nodes of the ontogram in Fig. 2) and the y-axis corresponds to the number of synontomorphies. The onset of the changes to the skull roof, snout, mandibular ramus, and suspensorium modules occur early in growth, whereas the onset of changes to the parietal and braincase occur in adulthood. Changes continue throughout growth in all domains, aside from those to the parietal that cease at growth stage 14. Full-size DOI: 10.7717/peerj.9192/fig-11
Figure 31 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 31 Bivariate scatterplot showing the test of ontogenetic recapitulation of phylogenetic novelties in Tyrannosaurus rex. Growth stage rank (increases away from the origin) is along the x-axis; clade rank (increases away from the origin) is along the y-axis. If recapitulation is present, then the ranks will increase montonically from the origin. A recapitulatory pattern is not seen in T. rex; see text for details. Full-size DOI: 10.7717/peerj.9192/fig-31
Figure 22 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 22 Sex dimorphs of Larson (2008) mapped onto the growth curve of Tyrannosaurus rex. A transitional pattern is not seen between gracile and robust morphs; if sexual dimorphism was present, then the "gracile" and "robust" morphs should grade into each other, which is not seen. Likewise, an ontogenetic progression among the cranial and postcranial indices is not seen. See text for details. Key to specimens numbered on the growth curve is in Fig. 12. Full-size DOI: 10.7717/peerj.9192/fig-22
Figure 33 A in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 33 A simplified cladogram of living and extinct Archosauriformes showing 13 cranial and postcranial growth changes that are optimized as synapomorphies. Most of the growth changes are ancestral for Archosauriformes. The position of several characters at progressively exclusive clades is almost certainly an artifact of missing data (e.g., increase in mandible height, enlargement of muscle attachments, etc.) and they are predicted to be synapomorphic for Archosauriformes once the appropriate data are acquired. This comparison shows that highly derived species such as Tyrannosaurus rex do not deviate from the ancestral growth trends that first evolved in significantly smaller taxa. See text for sources; see Table 23 for the distribution of character states among the taxa. Full-size DOI: 10.7717/peerj.9192/fig-33
Figure 20 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 20 Bivariate scatterplot showing the relationship between stratigraphic position with maturity among nine specimens of Tyrannosaurus rex. Growth stages (x-axis) and stratigraphic position (y-axis) have been converted to ranks. See Table 18 for the raw and ranked data. Maturity rank increases to the right; stratigraphic rank decreases from the origin (i.e., the upper HCF is closest to the origin, whereas the lower HCF is furthest from the origin). Full-size DOI: 10.7717/peerj.9192/fig-20
Figure 10 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 10 The frequency distribution of postcranial synontomorphies in the growth series of Tyrannosaurus rex. Growth stages are along the x-axis (corresponding to the numbered nodes of the ontogram in Fig. 2) and the y-axis corresponds to the number of synontomorphies. Changes to the appendicular skeleton dominate in the transition between juvenile and subadult, whereas changes to the pelvic girdle and axial skeleton occur late in adulthood. Full-size DOI: 10.7717/peerj.9192/fig-10
Figure 9 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 9 The frequency distribution of synontomorphies by apneumatic anatomical domain in the growth series of Tyrannosaurus rex. Growth stages are along the x-axis (corresponding to the numbered nodes of the ontogram in Fig. 2) and the y-axis corresponds to the number of synontomorphies. Changes to the skull frame are dominant over others and all are sustained throughout growth, aside from the dentition and cervical occiput. crv occ, cervical occiput; dntn, dentition; dtfo, dorsotemporal fossa; jnt srfc, joint surfaces; mscl scrs, muscle scars; nrvsc, neurovasculature; sbct srfc, subcutaneous surface; skl frm, skull frame. Full-size DOI: 10.7717/peerj.9192/fig-9
Figure 7 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 7 Comparison of the frequency distribution of synontomorphies of the cranium with that of the mandibular ramus in the ontogeny of Tyrannosaurus rex. Growth stages are along the x-axis (corresponding to the numbered nodes of the ontogram in Fig. 2) and the y-axis corresponds to the number of synontomorphies. Skull changes are shown with solid bars; mandible changes are shown with hollow bars. Although a greater number of changes is seen in the cranium than in the mandibular ramus, the lower jaw completes its early phase of changes (stage 5) before the cranium (stage 6). Thereafter, the pattern of mandibular changes is generally congruent with the cranium. Full-size DOI: 10.7717/peerj.9192/fig-7
Figure 8 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 8 The frequency distribution of synontomorphies by cephalic pneumatic system in the growth series of Tyrannosaurus rex. Growth stages are along the x-axis (corresponding to the numbered nodes of the ontogram in Fig. 2) and the y-axis corresponds to the number of synontomorphies. Changes to the antorbital sinus system are dominant over others and are sustained though growth, in contrast to the other systems that occur in adulthood and are transient in occurrence. aosin, antorbital sinus system; pharyn, pharyngeal sinus system; subcon, subcondylar sinus system; tympcav, tympanic cavity. Full-size DOI: 10.7717/peerj.9192/fig-8
Figure 32 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 32 Bivariate scatterplot showing the congruence between individual variation per specimen per node compared with the number of unambiguously optimized synontomorphies per node in Tyrannosaurus rex. The number of synontomorphies per node are along the x-axis; the amount of individual variation (i.e., unambiguously optimized character states per branch) is along the y-axis. Both values increase away from the origin. If the amount of individual variation is controlled by the number of synontomorphies per node, then the variables should increase monotonically. In this case, no congruence is seen between the variables in T. rex. Full-size DOI: 10.7717/peerj.9192/fig-32
Figure 18 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 18 Bivariate scatterplots showing the relationship between mass with maturity among nine specimens of Tyrannosaurus rex. The comparison is limited to specimens that have published mass estimates; growth stages (x-axis) and mass (y-axis) have been converted to ranks. See Table 16 for the raw data. Full-size DOI: 10.7717/peerj.9192/fig-18
Figure 4 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 4 Frequency distribution of unambiguously optimized synontomorphies during the growth of Tyrannosaurus rex. Growth stages (corresponding to the numbered nodes of the ontogram in Fig. 2) are along the x-axis and the number of changes are along the y-axis. The greatest number of changes are seen in the transition from large juvenile to subadult, or, from growth stage 5–6; the high concentration of change between these growth categories is evidence that T. rex ontogeny is metamorphic (sensu Rose & Reiss, 1993). Full-size DOI: 10.7717/peerj.9192/fig-4
Figure 5 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 5 Comparison of the frequency distributions of phylogenetic and nonphylogenetic synontomorphies in the ontogeny of Tyrannosaurus rex. Growth stage is along the x-axis (corresponding to the numbered nodes of the ontogram in Fig. 2) and number of synontomorphies is along the y-axis. Phylogenetic characters are in solid bars; nonphylogenetic characters are in hollow bars. The frequency distributions of both sets of data follow the same general pattern, aside from the flatter distribution of the phylogenetic synontomorphies relative to the nonphylogenetic synontomorphies and the reversed pattern seen at growth stages 7 and 8. Both types of changes occur throughout the lifespan of T. rex, indicating that ontogeny is not strictly congruent with phylogeny. Full-size DOI: 10.7717/peerj.9192/fig-5
Figure 16 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 16 Bivariate scatterplot showing the relationship between chronological age with maturity among eight specimens of Tyrannosaurus rex. The comparison is limited to specimens that have been histologically aged; growth stages (x-axis) and chronological age (y-axis) have been converted to ranks. See Table 14 for the raw data. Full-size DOI: 10.7717/peerj.9192/fig-16
Figure 3 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 3 Scatterplot showing the noncongruence in Tyrannosaurus rex between the completeness of specimens (i.e., number of characters scored) and the number of synontomorphies at each corresponding node. Per cent completeness (decreasing away from the origin) and the number of synontomorphies supporting the corresponding node (decreasing away from the origin) have been converted to ranks. A Spearman correlation test on these data results in a nonsignificant correlation coefficient; ergo, the number of synontomorphies at an internode is not an artifact of specimen completeness. Full-size DOI: 10.7717/peerj.9192/fig-3
Figure 30 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 30 Comparison of recapitulatory synontomorphies of Tyrannosaurus rex with tyrannosauroid phylogeny. Ten unambiguously optimized synontomorphies are congruent with unambiguously optimized synapomorphies of tyrannosauroid phylogeny, providing limited evidence of recapitulation (see text for details). Numbers to the right correspond to the growth stages in Fig. 2. If recapitulation was present, then the growth stage numbers should increase with progressively exclusive clades; that pattern is not seen here. Full-size DOI: 10.7717/peerj.9192/fig-30
Figure 29 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 29 Reptile Encephalization Quotients (REQs) of Hurlburt, Ridgley & Witmer (2013) mapped onto the growth curve of Tyrannosaurus rex. The REQ is based on a brain mass to endocranial volume ratio of 37% and the parenthetical values following the REQs corresponds to the two different body mass estimates, in metric tonnes, from which the REQs were derived (see Hurlburt, Ridgley & Witmer, 2013 for details). Overall, the REQ of the juvenile greatly exceeds that of adults, and the adults show an increasing ontogenetic progression of REQ values, as first reported by Hurlburt, Ridgley & Witmer (2013). Key to specimens numbered on the growth curve is in Fig. 12. Full-size DOI: 10.7717/peerj.9192/fig-29
Figure 26 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 26 Heat maps of the ontogenetic changes seen in the skull and mandible of Tyrannosaurus rex. Illustrations show per centage of the total number of unambiguously optimized synontomorphies per bone (A) and functional module (B). Darker shades of gray indicate higher proportions of growth change, whereas lighter shades indicate lower proportions of change. The results show that the greatest amount of growth changes are at the lacrimal (A) or along the dorsal skull roof (B). Hatchure indicates empty space; stipple indicates unprepared matrix. Full-size DOI: 10.7717/peerj.9192/fig-26
Figure 25 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 25 The results of Therrien, Henderson & Ruff (2005) compared with the growth curve of Tyrannosaurus rex. Vertical bending strength and relative bending strength (sensu Therrien, Henderson & Ruff, 2005) mapped onto the growth curve of T. rex. Values for juveniles are missing for mid-dentary dorsoventral strength and mid-dentary relative strength. In general, strength increases ontogenetically, a trend that becomes obscured in adulthood. Key to specimens numbered on the growth curve is in Fig. 12. Full-size DOI: 10.7717/peerj.9192/fig-25
Figure 1 in A high-resolution growth series of Tyrannosaurus rex obtained from multiple lines of evidence
Figure 1 Results of the cladistic analysis of 1,850 characters among 44 specimens of Tyrannosaurus rex. (A) Strict consensus of 50 MPTs showing the recovery of three primary growth stages separated by the specimen BMRP 2002.4.1. (B) The single ontogram recovered after the exclusion of wildcard specimens, reducing the number of OTUs to 31. Numbers to the left of the internodes are bootstrap and jackknife values, respectively; numbers to the right are Bremer decay indices. Asterisk indicates the type specimen. Ellipses enclose the regions of polytomies produced by the wildcard specimens, which are listed in the lower right hand corner of the corresponding ellipse. Note that the ellipses are limited to one side or the other relative to BMRP 2002.4.1, which corresponds to the topology of the strict consensus ontogram. Full-size DOI: 10.7717/peerj.9192/fig-1
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.