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FIGURE 1. Clupisoma longianale, KIZ 735118 in The species of Clupisoma from Yunnan, China (Teleostei: Siluriformes: Ailiidae), with a comment on the validity of the family Ailiidae
FIGURE 1. Clupisoma longianale, KIZ 735118, holotype, 138 mm SL; Yunnan: Pu-Er County: Tongxing Township, main stream of the Lancang-jiang, the upper Mekong River.
FASTQ datasets for the validation of the Neisseria pipeline
<p>todo: update</p>
FIGURE 10 in A new species of short-fingered geckos Stenodactylus (Squamata, Geckonidae) from South Iran with taxonomic notes on validity of the genus Trigonodactylus Hass, 1957
FIGURE 10. Frontal (left column), lateral (median column), and ventral (right column) skull projections of the members of the genera Stenodactylus, Pseudoceramodactylus and Trigonodactylus: a—S. affinis; b—S. doriae; c—S. grandiceps; d—S. leptocosymbotes; e—S. petrii; f—S. sthenodactylus; g—P. khobarensis; h—Trigonodactylus persicus sp. nov. Colours denote the following bones: maxillary—yellow; prefrontal—orange; nasal—light green; permaxillary—blue; pterygoid—pink; palatine—green.
FIGURE 8 in A new species of short-fingered geckos Stenodactylus (Squamata, Geckonidae) from South Iran with taxonomic notes on validity of the genus Trigonodactylus Hass, 1957
FIGURE 8. Holotype of Stenodactylus pulcher Anderson BMNH 1946.8.23.38 in dorsal, ventral and lateral aspects (photo by Patrick Campbell and Stephen Mahony; courtesy of BMNH).
FIGURE 7 in A new species of short-fingered geckos Stenodactylus (Squamata, Geckonidae) from South Iran with taxonomic notes on validity of the genus Trigonodactylus Hass, 1957
FIGURE 7. Results of discriminant analysis of T. arabicus (diamonds), Trigonodactylus persicus sp. nov. (circles), and T. sharqiyahensis (squares) based on 16 morphometric characters (SVL, TailL, HeadL, HeadW, HeadH, SynEye, OrbD, EarL, EyeEar, TrunkL, LS, ForeaL, FemurL, CrusL, LD4A, LD4P) (a—males; b—females; c—both sexes analyzed together).
FIGURE 2 in A new species of short-fingered geckos Stenodactylus (Squamata, Geckonidae) from South Iran with taxonomic notes on validity of the genus Trigonodactylus Hass, 1957
FIGURE 2. ML-tree of studied Stenodactylus and Trigonodactylus species based on the analyses of 602 bp COI mtDNA gene fragment. Node colour indicates support values: black for well-supported and sufficiently supported nodes, grey for moderately or poorly supported nodes. Node support values are shown above or below tree nodes for ML BS/MP BS/BI PP analyses respectively.
FIGURE 5 in A new species of short-fingered geckos Stenodactylus (Squamata, Geckonidae) from South Iran with taxonomic notes on validity of the genus Trigonodactylus Hass, 1957
FIGURE 5. Members of the genus Trigonodactylus in situ: a—Trigonodactylus persicus sp. nov.; b—T. sharqiyahensis (Metallinou & Carranza, 2013); c—T. arabicus Hass, 1957.
FIGURE 9 in A new species of short-fingered geckos Stenodactylus (Squamata, Geckonidae) from South Iran with taxonomic notes on validity of the genus Trigonodactylus Hass, 1957
FIGURE 9. Dorsal view of skulls of representatives of the genera Stenodactylus, Pseudoceramodactylus and Trigonodactylus; (A–H)—photos; (a–h)—schematic drawing showing the shape of skull roof. (A, a)—S. affinis; (B, b)—S. doriae; (C, c)—S. grandiceps; (D, d)—S. leptocosymbotes; (E, e)—S. petrii; (F, f)—S. sthenodactylus; (G, g)—P. khobarensis; (H, h)— Trigonodactylus persicus sp.nov. Colours denote the following bones: frontal—light grey; parietal—dark grey; postorbitofrontal—yellow; prefrontal—orange; nasal—brown; intermaxillary—grey.
FIGURE 4 in A new species of short-fingered geckos Stenodactylus (Squamata, Geckonidae) from South Iran with taxonomic notes on validity of the genus Trigonodactylus Hass, 1957
FIGURE 4. Dorsal (upper row), lateral (median row) and mental (lower row) views of heads of all members of the genus Trigonodactylus: T. arabicus holotype CAS 84321 (a; f; k); T. arabicus ZMMU R-14666-1 (b; e; l); Trigonodactylus persicus sp. nov. ZMMUR-14669 (c; h; m); T. sharqiyahensis ZMMU R-14667-1 (d; i; n); T. pulcher holotype BMNH 1946.8.23.38. (e; j; o).
FIGURE 3 in A new species of short-fingered geckos Stenodactylus (Squamata, Geckonidae) from South Iran with taxonomic notes on validity of the genus Trigonodactylus Hass, 1957
FIGURE 3. Holotype of Trigonodactylus persicus sp. nov.: (a) specimen in situ; (b) ventral view sowing roundish and keeled ventral scales; (c) thenar surface of fingers showing fringes and few median lamellae on distal edge of digits.
FIGURE 6 in A new species of short-fingered geckos Stenodactylus (Squamata, Geckonidae) from South Iran with taxonomic notes on validity of the genus Trigonodactylus Hass, 1957
FIGURE 6. Thenar views of fore- (upper row) and hindlimbs (lower row) of the genus Trigonodactylus representatives: (a; b)—T. arabicus with well-developed webbing between fingers and toes; (c; d)—Trigonodactylus persicus sp. nov. and (e; f)— T. sharqiyahensis without webbing on fingers and toes.
FIGURE 1 in A new species of short-fingered geckos Stenodactylus (Squamata, Geckonidae) from South Iran with taxonomic notes on validity of the genus Trigonodactylus Hass, 1957
FIGURE 1. Distribution of the genus Trigonodactylus: circle—Trigonodactylus persicus sp. nov., squares—T. arabicus, diamonds—T. sharqiyahensis, triangles—T. pulcher; red colour denotes type localities of abovementioned species; blue colour—records from previously published data; green colour—our findings.
CliqueMS Validation Data
<p>CliqueMSData</p> <p>Data used for the validation of CliqueMS (<a href="https://CRAN.R-project.org/package=cliqueMS">https://CRAN.R-project.org/package=cliqueMS)</a></p> <p>This repository contains the mzXML files corresponding to the novel LC-MS1 spectra used to validate CliqueMS. The raw data corresponding to these files has been obtained as explained below. The corresponding mzXML files have been obtained using the msconvert tool in ProteoWizard.</p> <p>This repository includes 3 files:</p> <p>standards.mzXML</p> <p>positive.mzXML</p> <p>negative.mzXML</p> <p> </p> <p><strong>standards.mzXML - Mixture of standards</strong></p> <p><em>Materials.</em></p> <p>MS1 grade acetonitrile (ACN), ammonium acetate (NH4Ac) and NH4OH were purchased from SDS (Peypin, France). Water was produced in an in-house Milli-Q purification system (Millipore, Molsheim, France). Formic acid and ammonium fluoride were purchased from Sigma-Aldrich (Steinheim, Germany). Standards: (-)riboflavine, 1,2-distearoyl-sn-glycero-3-phosphocholine, biotin, cholic acid, deoxycholic acid, L-methionine sulfoxide, thymine and uracil were purchased from Sigma-Aldrich (Steinheim, Germany).</p> <p>Standard mix preparation.</p> <p>All standards were pooled to a final concentration of 1ppm in H2O:ACN (5:95) with 0.1% formic acid.</p> <p><em>MS1 analyses.</em></p> <p>MS1 analyses were performed using an UHPLC system (1290 series, Agilent Technologies) coupled to a 6550 ESI-QTOF MS (Agilent Technologies) operated in positive (ESI+) electrospray ionization mode. A vial containing the standard mix was kept at -20ºC prior to MS1 analysis. Metabolites were separated using an Acquity UPLC BEH HILIC column (2.1 x 150 mm, 1.8 \mu m) and the solvent system was A1 = 20mM ammonium acetate and 15 mM NH4OH in water and B1 = 95% ACN and 5% H2O. The linear gradient elution started at 100% B (time 0--2 min) and finished at 75% A (10-15 min). The injection volume was 5 \mu L. ESI conditions: gas temperature, 150ºC; drying gas, 13 L min--1; nebulizer, 35 psig; fragmentor, 400 V; and skimmer, 65 V. The instrument was set to acquire over the m/z range 100--1500 in full-scan mode with an acquisition rate of 4 spectra/sec. MS/MS was performed in targeted mode, and the instrument was set to acquire over the m/z range 50--1000, with a default isolation width (the width half-maximum of the quadrupole mass bandpass used during MS/MS precursor isolation) of 4 m/z. The collision energy was fixed at 20 V.</p> <p><strong>positive.mzXML & negative.mzXML - Complex Samples</strong></p> <p><em>Materials.</em></p> <p>MS1 grade methanol (MeOH) and acetonitrile (ACN) and analytical grade chloroform (CHCl3) were purchased from SDS (Peypin, France). Water was produced in an in-house Milli-Q purification system (Millipore, Molsheim, France). Formic acid and ammonium fluoride were purchased from Sigma-Aldrich (Steinheim, Germany).</p> <p><em>Experimental Animals.</em></p> <p>Irs-2-deficient mice were generated initially on a C57BL6/J: SV129 background and then backcrossed to establish a pure C57BL6/J background. Thus, the offspring resulting from the breeding of Irs-2(2/2) with RIP-Irs-2 line were C57BL6/J.</p> <p><em>Metabolite extraction method.</em></p> <p>Retinas were first lyophilized and metabolites were extracted adding 190 uL of MeOH and 120 uL of H2O, then vortex during 30 seconds. Afterwards, samples were frozen during 1 min in liquid nitrogen (N2) and thawed by cold sonication during 30 seconds. This step was applied three times. Then 380 uL of chloroform were added and vortexed during 30 seconds. Finally, samples were centrifuged (15000 rpm, 15 min a 4ºC). The supernatant was extracted and dried. The sample was suspended in 100 uL of H2O:MeOH (1:1) and stored at -80ºC until further analysis.</p> <p>MS1 analyses.</p> <p>MS1 analyses were performed using an UHPLC system (1290 series, Agilent Technologies) coupled to a 6550 ESI-QTOF MS (Agilent Technologies) operated in positive (ESI+) or negative (ESI-) electrospray ionization mode. Vials containing extracted metabolites were kept at -20ºC prior to MS1 analysis. When the instrument was operated in positive ionization mode, metabolites were separated using an Acquity UPLC (HSS T3) C18 reverse phase (RP) column (2.1 x 150 mm, 1.8 \mu m) and the solvent system was A1 = 0.1% formic acid in water and B1 = 0.1% formic acid in acetonitrile. When the instrument was operated in negative ionization mode, metabolites were separated using an Acquity UPLC (BEH) C18 RP column (2.1 x 150 mm, 1.7 \mu m) and the solvent system was A2 = 1 mM ammonium fluoride in water and B2 = acetonitrile. The linear gradient elution started at 100% A (time 0--2 min) and finished at 100% B (10-15 min). The injection volume was 5 \mu L. ESI conditions: gas temperature, 150ºC; drying gas, 13 L min--1; nebulizer, 35 psig; fragmentor, 400 V; and skimmer, 65 V. The instrument was set to acquire over the m/z range 100--1500 in full-scan mode with an acquisition rate of 4 spectra/sec. MS/MS was performed in targeted mode, and the instrument was set to acquire over the m/z range 50--1000, with a default isolation width (the width half-maximum of the quadrupole mass bandpass used during MS/MS precursor isolation) of 4 m/z. The collision energy was fixed at 20 V. positive.mzXML and negative.mzXML files correspond to LC-MS1 spectra obtained for positive and negative ionization, respectively.</p>
kennek12/HUG-5_validation: HUG-5 Validation- pre print
<p>Data, analysis and figures for pre-print access.</p>
TESSe2b Small Scale Validations (Spain, Austria and Cyprus)
<p>Video - TESSe2b Small Scale Validations in Spain, Austria and Cyprus.</p>
TESSe2b Small Scale Validation - Installation Phase (Spain)
<p>Video - TESSe2b Small Scale Validation in Spain (installation phase)</p>
TESSe2b Small Scale Validation (Spain)
<p>Video - TESSe2b Small Scale Validation in Spain</p>
Artifact for "Are My Invariants Valid? A Learning Approach"
<p>This is the preliminary artifact for our paper on learning to judge the validity of invariants (specifically, method pre- and post-conditions), including data, code and output logs. Please see the README for details on the contents and how to run the code.</p>
FIGURE 6 in Dolichochorus Strobl 1904: a valid genus of Mesochorinae (Hymenoptera: Ichneumonidae: Mesochorinae)
FIGURE 6. Dolichochorus longiceps faces, from left to right: ♀, Japan, Hokkaido, Horokanai t, Uryu-kenkyurin (KPMNH), D. elongatus (Nakanishi) holotype ♀ (MNHAH), paratype ♂ (MNHAH).
FIGURE 4 in Dolichochorus Strobl 1904: a valid genus of Mesochorinae (Hymenoptera: Ichneumonidae: Mesochorinae)
FIGURE 4. Dolichochorus longiceps (specimen NHMUK010880738) hind wing, arrows pointing to position of nervellus (distal abscissa of CU).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.