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Figure 2. Calibrated phylogenetic tree obtained with BEAST v.1.10.4 in Cryptic lineages, cryptic barriers: historical seascapes and oceanic fronts drive genetic diversity in supralittoral rockpool beetles (Coleoptera: Hydraenidae)
Figure 2. Calibrated phylogenetic tree obtained with BEAST v.1.10.4 of Ochthebius with focus on subgenus Cobalius (purple shade) and quadricollis species group (green shade) (former subgenus 'Calobius'). Numbers at nodes represent posterior probabilities, and 95% highest posterior density are given in blue horizontal rectangles. Calibrations points used in analysis are specified by grey dots.
Figure 5 in Cryptic lineages, cryptic barriers: historical seascapes and oceanic fronts drive genetic diversity in supralittoral rockpool beetles (Coleoptera: Hydraenidae)
Figure 5. Haplotype networks for COI and wingless for Ochthebius (Cobalius) lejolisii. Colours represent the main geographic areas indicated in the legend.
Figure 1 in Cryptic lineages, cryptic barriers: historical seascapes and oceanic fronts drive genetic diversity in supralittoral rockpool beetles (Coleoptera: Hydraenidae)
Figure 1. Distribution of sampling localities 1-57 (as listed in Table 1) and main surface marine currents and potential geographic barriers to dispersal (inset top-right).
Figure 4 in Cryptic lineages, cryptic barriers: historical seascapes and oceanic fronts drive genetic diversity in supralittoral rockpool beetles (Coleoptera: Hydraenidae)
Figure 4. Haplotype networks for COI and wingless for Ochthebius (Cobalius) subinteger. Colours represent the main geographic areas indicated in the legend.
Supplementary material 1 from: Voigtländer K, Iorio E, Decker P, Spelda J (2017) The subgenus Monotarsobius in the Iberian Peninsula with a description of a new pseudo-cryptic species from Northern Spain revealed by an integrative revision of Lithobius crassipes L. Koch, 1862 (Chilopoda, Lithobiomorpha, Lithobiidae). ZooKeys 681: 1-38. https://doi.org/10.3897/zookeys.681.12942
Full data of investigated specimens of Lithobius crassipes : Explanation note: Information on locality, date, collector, collection, sex of investigated specimens of Lithobius crassipes.
Supplementary material 1 from: Seidel M, Jameson ML, Stone RL (2017) A new cryptic species and review of the east-Andean leaf chafer genus Mesomerodon Ohaus, 1905 (Coleoptera, Scarabaeidae, Rutelinae). ZooKeys 671: 61-85. https://doi.org/10.3897/zookeys.671.11815
Distribution data for Mesomerodon species (Coleoptera, Scarabaeidae, Rutelinae) : Explanation note: Specimen level data used for niche model, phenology, and overall distribution.
Supplementary material 6 from: Agnarsson I, LeQuier SM, Kuntner M, Cheng R-C, Coddington JA, Binford G (2016) Phylogeography of a good Caribbean disperser: Argiope argentata (Araneae, Araneidae) and a new 'cryptic' species from Cuba. ZooKeys 625: 25-44. https://doi.org/10.3897/zookeys.625.8729
Table S3 : Explanation note: Genetic and Geographic distances among all ingroup specimens used in generating Figure 2.
Supplementary material 5 from: Agnarsson I, LeQuier SM, Kuntner M, Cheng R-C, Coddington JA, Binford G (2016) Phylogeography of a good Caribbean disperser: Argiope argentata (Araneae, Araneidae) and a new 'cryptic' species from Cuba. ZooKeys 625: 25-44. https://doi.org/10.3897/zookeys.625.8729
Table S2 : Explanation note: Results of Fst and Kxy (average number of nucleotide differences) analyses among specimens from all islands and mainland. The Cuban specimens, here described as a new species, stand out in both analyses indicating genetic isolation and divergence.
Supplementary material 2 from: Agnarsson I, LeQuier SM, Kuntner M, Cheng R-C, Coddington JA, Binford G (2016) Phylogeography of a good Caribbean disperser: Argiope argentata (Araneae, Araneidae) and a new 'cryptic' species from Cuba. ZooKeys 625: 25-44. https://doi.org/10.3897/zookeys.625.8729
Figure S2 : Explanation note: Bayesian phylogeny based on analysis in MrBayes using the two nuclear genes.
Supplementary material 9 from: Van Cann J, Virgilio M, Jordaens K, De Meyer M (2015) Wing morphometrics as a possible tool for the diagnosis of the Ceratitis fasciventris, C. anonae, C. rosa complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 489-506. https://doi.org/10.3897/zookeys.540.9724
Unconstrained ordination of wing band areas: Explanation note: Principal component analysis (PCA) showing morphometric differences in wing band areas between males and females (a) Ceratitis anonae, Ceratitis fasciventris and Ceratitis rosa and (b) genotypic clusters A, F1, F2, R1, R2.
Supplementary material 8 from: Van Cann J, Virgilio M, Jordaens K, De Meyer M (2015) Wing morphometrics as a possible tool for the diagnosis of the Ceratitis fasciventris, C. anonae, C. rosa complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 489-506. https://doi.org/10.3897/zookeys.540.9724
Unconstrained ordination of wing landmarks: Explanation note: Principal component analysis (PCA) showing morphometric differences in wing landmarks between males and females (a) Ceratitis anonae, Ceratitis fasciventris and Ceratitis rosa and (b) genotypic clusters A, F1, F2, R1, R2.
Supplementary material 6 from: Van Cann J, Virgilio M, Jordaens K, De Meyer M (2015) Wing morphometrics as a possible tool for the diagnosis of the Ceratitis fasciventris, C. anonae, C. rosa complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 489-506. https://doi.org/10.3897/zookeys.540.9724
Preliminary methodological experiment: unconstrained ordination of wing band areas: Explanation note: Principal component analysis (PCA) showing morphometric differences in wing band areas of 14 Ceratitis rosa specimens across sexes, wings (LW: left wing, RW: right wing), repeated images of the same wing (1, 2), repeated measures of the same image (A, B).
Supplementary material 4 from: Van Cann J, Virgilio M, Jordaens K, De Meyer M (2015) Wing morphometrics as a possible tool for the diagnosis of the Ceratitis fasciventris, C. anonae, C. rosa complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 489-506. https://doi.org/10.3897/zookeys.540.9724
Wing landmarks and wing band areas: Explanation note: Position of wing landmarks and wing band areas (numbers according to Suppl. material 3).
Supplementary material 3 from: Van Cann J, Virgilio M, Jordaens K, De Meyer M (2015) Wing morphometrics as a possible tool for the diagnosis of the Ceratitis fasciventris, C. anonae, C. rosa complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 489-506. https://doi.org/10.3897/zookeys.540.9724
Wing landmarks and wing band areas: Explanation note: List of wing landmarks and wing band areas considered in this study.
Supplementary material 2 from: Van Cann J, Virgilio M, Jordaens K, De Meyer M (2015) Wing morphometrics as a possible tool for the diagnosis of the Ceratitis fasciventris, C. anonae, C. rosa complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 489-506. https://doi.org/10.3897/zookeys.540.9724
Map of sampling locations: Explanation note: Number of sampled specimens for each morphospecies are indicated in parentheses.
Supplementary material 15 from: Van Cann J, Virgilio M, Jordaens K, De Meyer M (2015) Wing morphometrics as a possible tool for the diagnosis of the Ceratitis fasciventris, C. anonae, C. rosa complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 489-506. https://doi.org/10.3897/zookeys.540.9724
Morphometric differences across genotypic clusters (wing band areas): Explanation note: PERMANOVA and a posteriori comparisons (t-statistic) testing differences in multivariate patterns of wing band areas among morphospecies (Ceratitis anonae, Ceratitis fasciventris, Ceratitis rosa). d.f.: degrees of freedom; MS: mean square estimates; F: pseudo-F. Probability of Monte Carlo simulations: n.s.: not significant a P<0.05; ***: P<0.001, **: P<0.01; *: P<0.05 (after False Discovery Rate Correction for repeated a posteriori comparisons).
Supplementary material 14 from: Van Cann J, Virgilio M, Jordaens K, De Meyer M (2015) Wing morphometrics as a possible tool for the diagnosis of the Ceratitis fasciventris, C. anonae, C. rosa complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 489-506. https://doi.org/10.3897/zookeys.540.9724
Morphometric differences across morphospecies (wing band areas): Explanation note: PERMANOVA and a posteriori comparisons (t-statistic) testing differences in multivariate patterns of wing band areas among morphospecies (Ceratitis anonae, Ceratitis fasciventris, Ceratitis rosa). d.f.: degrees of freedom; MS: mean square estimates; F: pseudo-F. Probability of Monte Carlo simulations: n.s.: not significant a P<0.05; ***: P<0.001, **: P<0.01; *: P<0.05 (after False Discovery Rate Correction for repeated a posteriori comparisons).
Supplementary material 5 from: Van Cann J, Virgilio M, Jordaens K, De Meyer M (2015) Wing morphometrics as a possible tool for the diagnosis of the Ceratitis fasciventris, C. anonae, C. rosa complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 489-506. https://doi.org/10.3897/zookeys.540.9724
Preliminary methodological experiment: unconstrained ordination of wing landmarks: Explanation note: Principal component analysis (PCA) showing morphometric differences in wing landmarks of 14 Ceratitis rosa specimens across sexes (M, F), wings (LW: left wing, RW: right wing), repeated images of the same wing (1, 2), repeated measures of the same image (A, B).
Supplementary material 7 from: Van Cann J, Virgilio M, Jordaens K, De Meyer M (2015) Wing morphometrics as a possible tool for the diagnosis of the Ceratitis fasciventris, C. anonae, C. rosa complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 489-506. https://doi.org/10.3897/zookeys.540.9724
Unconstrained ordination of wing landmarks across sexes of each morphospecies: Explanation note: Principal component analysis (PCA) showing morphometric differences in wing landmarks between sexes of each morphospecies (Ceratitis anonae, Ceratitis fasciventris, Ceratitis rosa). (all 227 specimens included).
Supplementary material 13 from: Van Cann J, Virgilio M, Jordaens K, De Meyer M (2015) Wing morphometrics as a possible tool for the diagnosis of the Ceratitis fasciventris, C. anonae, C. rosa complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 489-506. https://doi.org/10.3897/zookeys.540.9724
Individual assignments to genotypic clusters A, F1, F2, R1, R2: Explanation note: Posterior group membership probabilities (PGMPs) of male and female specimens as resulting from Discriminant Analysis of Principal Coordinates of wing landmarks (upper) or wing band areas (lower). Prior groups: A, F1, F2, R1, R2 (from white to dark blue).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.