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zenodo36/100

Retaule de Sant Sebastià, M d'AG

**CAT** Taula central d'un retaule de grans dimensions, avui desaparegut, dedicat a sant Sebastià. Tallada en fusta i ricament policromada i daurada, l'obra va ser iniciada per Josep Tramulles, un dels millors escultors catalans de l'època del barroc. Del retaule, avui només se'n conserva aquesta taula exposada al Museu d'Art de Girona. **ES** Tabla central de un retablo de grandes dimensiones, hoy desaparecido, dedicado a San Sebastián. Tallada en madera y ricamente policromada y dorada, la obra fue iniciada por Josep Tramulles, uno de los mejores escultores catalanes de la época del barroco. Del retablo, hoy sólo se conserva esta tabla expuesta en el Museu d'Art de Girona. **EN** This is the central panel from a large altarpiece dedicated to Saint Sebastian. Carved out of wood and richly polychromed and gilt, the piece was begun by Josep Tramulles, one of the best Catalan sculptors of the baroque period. This is the only part of the altarpiece that is still in existence; it is kept at M d'Art de Girona. Source: Objaverse 1.0 / Sketchfab

opencc-byDec 2020View details →
zenodo36/100

M'Bole People Anthropomorphic Figure

From the M'Bole People of Zaire. Carved wood with variegated brown patina with aged white kaolin of a male figure with human body arching forward with elongated torso. White kaolin, arms extended outward from body and hands resting on upper thighs, small concave heart-shaped face with small seed eyes, round animal-like mouth, double crested head treatment, indigenous rope wrapped around wrists, additional rope extending from neck and secured at waist for suspension. Source: Objaverse 1.0 / Sketchfab

opencc-byApr 2020View details →
zenodo36/100

COADS_45(M)-9

Diagnostic biface collected in Ross County, Ohio. Material Type: Wyandot Uploaded by: Sidney Travis Suggested Data Citation: Nolan, Kevin C., Eric Olson, Kelli Wathen, Sidney Travis, Abby Clark, and Michael Shott, 2017. COADS_45(M)-9, 3D Model .ply file. Central Ohio Archaeological Digitization Survey, Department of Anthropology, University of Akron and Applied Anthropology Laboratories, Department of Anthropology, Ball State University. Source: Objaverse 1.0 / Sketchfab

opencc-by-sa-2.5Sep 2018View details →
zenodo36/100

Dataset for article: Perakakis, P., Taylor, M., Martinez-Nieto, E., Revithi, I., Vila, J. (2009). Breathing Frequency Bias in Fractal Analysis of Heart Rate Variability. Biological Psychology, 82(1), pp. 82-88

<p>Dataset for article:</p> <p>Perakakis, P., Taylor, M., Martinez-Nieto, E., Revithi, I., Vila, J. (2009). Breathing Frequency Bias in Fractal Analysis of Heart Rate Variability. Biological Psychology, 82(1), pp. 82-88</p>

opencc-zeroFeb 2015View details →
zenodo36/100

Protein stable isotope fingerprinting (P-SIF): Mahoney Lake (Canada) 7-m biomass

<p>Carbon isotope data for proteins extracted from a biomass pellet from a sulfide-oxidizing phototroph layer (7m); Mahoney Lake, British Columbia, Canada.</p>

opencc-zeroOct 2015View details →
zenodo36/100

Molecular dynamics simulation trajectory of a cationic lipid bilayer: 50/50 mol% DMTAP/DMPC in 0.5 M NaCl

<p><strong>System:&nbsp;</strong>Symmetric bilayer of cationic&nbsp;DMTAP (dimyristoyltrimethylammoniumpropane, 50&nbsp;mol-%) and&nbsp;zwitterionic DMPC (dimyristoylphosphatidylcholine, 50 mol-%) lipids&nbsp;in 0.5&nbsp;M NaCl solution.</p> <p><strong>Number of DMPC:</strong>&nbsp;64.<br> <strong>Number of DMTAP:</strong>&nbsp;64.<br> <strong>Number of Na<sup>+</sup>-ions:</strong>&nbsp;48.<br> <strong>Number of Cl<sup>-</sup>-ions:</strong>&nbsp;112.<br> <strong>Number of waters:</strong>&nbsp;5240.</p> <p><strong>Lipid model:</strong>&nbsp;&#39;Berger&#39; united-atom [<em>Biophys. J.</em>&nbsp;<strong>72</strong>&nbsp;2002 (1997)] with&nbsp;DMTAP&nbsp;modification&nbsp;by&nbsp;Gurtovenko et al. [<em>Biophys. J.&nbsp;</em><strong>86</strong>&nbsp;3461 (2004)].<br> <strong>Water model:</strong>&nbsp;SPC [In&nbsp;<em>Intermolecular Forces,</em>&nbsp;ed. Pullman. 331 (1981)].</p> <p><strong>Simulation engine:</strong>&nbsp;Gromacs 3.x [www.gromacs.org]</p> <p><strong>Trajectory length:</strong>&nbsp;179&nbsp;ns.<br> <strong>Previously equilibrated for:</strong>&nbsp;21 ns.<br> <strong>Sampling rate:</strong>&nbsp;every 10 ps.</p> <p><strong>Time integration step:</strong>&nbsp;2 fs.</p> <p><strong>Thermodynamic ensemble:</strong>&nbsp;NpT.&nbsp;<br> <strong>Temperature coupling:</strong>&nbsp;&#39;Berendsen&#39; [<em>J. Chem. Phys.</em>&nbsp;<strong>81</strong>&nbsp;3684 (1984)] with lipids and water coupled separately at T = 323 K.<br> <strong>Pressure coupling: &#39;</strong>Berendsen&#39; [<em>J. Chem. Phys.</em>&nbsp;<strong>81</strong>&nbsp;3684 (1984)] with xy and z coupled separately at p = 1.0 bar.</p> <p><strong>Electrostatics:&nbsp;</strong>PME [<em>J. Chem. Phys.</em>&nbsp;<strong>98</strong>&nbsp;10089 (1993);&nbsp;<em>J. Chem. Phys.</em>&nbsp;<strong>103</strong>&nbsp;8577 (1995)], real-space cutoff at 1.0 nm.<br> <strong>Van der Waals:</strong>&nbsp;Truncated at 1.0 nm.</p> <p><strong>Constraints:&nbsp;</strong>Covalent bond lengths in lipids using LINCS [<em>J. Comput. Chem.</em>&nbsp;<strong>18</strong>&nbsp;1463 (1997)], in water using SETTLE [J. Comput. Chem.&nbsp;<strong>13</strong>&nbsp;952 (1992)].</p> <p><strong>Used in publications:&nbsp;</strong>[1]&nbsp;Markus S. Miettinen, Andrey A. Gurtovenko, Ilpo Vattulainen, and Mikko Karttunen: &quot;Ion Dynamics in Cationic Lipid Bilayer Systems in Saline Solutions&quot;.&nbsp;<em>J. Phys. Chem. B</em>&nbsp;<strong>113</strong>&nbsp;9226 (2009). DOI:&nbsp;10.1021/jp810233q. [2] Markus S. Miettinen: &quot;Computational Modeling of Cationic Lipid Bilayers in Saline Solutions&quot;. PhD Thesis.&nbsp;Aalto University School of Science and Technology, Helsinki, Finland. (2010). ISBN&nbsp;978-952-60-3194-1.</p>

opencc-by-4.0May 2016View details →
zenodo36/100

Molecular dynamics simulation trajectory of a cationic lipid bilayer: 50/50 mol% DMTAP/DMPC in 1.0 M NaCl

<p><strong>System:&nbsp;</strong>Symmetric bilayer of cationic&nbsp;DMTAP (dimyristoyltrimethylammoniumpropane, 50&nbsp;mol-%) and&nbsp;zwitterionic DMPC (dimyristoylphosphatidylcholine, 50 mol-%) lipids&nbsp;in 1.0 M NaCl solution.</p> <p><strong>Number of DMPC:</strong>&nbsp;64.<br> <strong>Number of DMTAP:</strong>&nbsp;64.<br> <strong>Number of Na<sup>+</sup>-ions:</strong>&nbsp;94.<br> <strong>Number of Cl<sup>-</sup>-ions:</strong>&nbsp;158.<br> <strong>Number of waters:</strong>&nbsp;5148.</p> <p><strong>Lipid model:</strong>&nbsp;&#39;Berger&#39; united-atom [<em>Biophys. J.</em>&nbsp;<strong>72</strong>&nbsp;2002 (1997)] with&nbsp;DMTAP&nbsp;modification&nbsp;by&nbsp;Gurtovenko et al. [<em>Biophys. J.&nbsp;</em><strong>86</strong>&nbsp;3461 (2004)].<br> <strong>Water model:</strong>&nbsp;SPC [In&nbsp;<em>Intermolecular Forces,</em>&nbsp;ed. Pullman. 331 (1981)].</p> <p><strong>Simulation engine:</strong>&nbsp;Gromacs 3.x [www.gromacs.org]</p> <p><strong>Trajectory length:</strong>&nbsp;170 ns.<br> <strong>Previously equilibrated for:</strong>&nbsp;21 ns.<br> <strong>Sampling rate:</strong>&nbsp;every 10 ps.</p> <p><strong>Time integration step:</strong>&nbsp;2 fs.</p> <p><strong>Thermodynamic ensemble:</strong>&nbsp;NpT.&nbsp;<br> <strong>Temperature coupling:</strong>&nbsp;&#39;Berendsen&#39; [<em>J. Chem. Phys.</em>&nbsp;<strong>81</strong>&nbsp;3684 (1984)] with lipids and water coupled separately at T = 323 K.<br> <strong>Pressure coupling: &#39;</strong>Berendsen&#39; [<em>J. Chem. Phys.</em>&nbsp;<strong>81</strong>&nbsp;3684 (1984)] with xy and z coupled separately at p = 1.0 bar.</p> <p><strong>Electrostatics:&nbsp;</strong>PME [<em>J. Chem. Phys.</em>&nbsp;<strong>98</strong>&nbsp;10089 (1993);&nbsp;<em>J. Chem. Phys.</em>&nbsp;<strong>103</strong>&nbsp;8577 (1995)], real-space cutoff at 1.0 nm.<br> <strong>Van der Waals:</strong>&nbsp;Truncated at 1.0 nm.</p> <p><strong>Constraints:&nbsp;</strong>Covalent bond lengths in lipids using LINCS [<em>J. Comput. Chem.</em>&nbsp;<strong>18</strong>&nbsp;1463 (1997)], in water using SETTLE [J. Comput. Chem.&nbsp;<strong>13</strong>&nbsp;952 (1992)].</p> <p><strong>Used in publications:&nbsp;</strong>[1]&nbsp;Markus S. Miettinen, Andrey A. Gurtovenko, Ilpo Vattulainen, and Mikko Karttunen: &quot;Ion Dynamics in Cationic Lipid Bilayer Systems in Saline Solutions&quot;.&nbsp;<em>J. Phys. Chem. B</em>&nbsp;<strong>113</strong>&nbsp;9226 (2009). DOI:&nbsp;10.1021/jp810233q. [2] Markus S. Miettinen: &quot;Computational Modeling of Cationic Lipid Bilayers in Saline Solutions&quot;. PhD Thesis.&nbsp;Aalto University School of Science and Technology, Helsinki, Finland. (2010). ISBN&nbsp;978-952-60-3194-1.</p>

opencc-by-4.0May 2016View details →
zenodo36/100

Molecular dynamics simulation trajectory of a cationic lipid bilayer: 6/94 mol% DMTAP/DMPC in 1.0 M NaCl

<p><strong>System:&nbsp;</strong>Symmetric bilayer of cationic&nbsp;DMTAP (dimyristoyltrimethylammoniumpropane, 6&nbsp;mol-%) and&nbsp;zwitterionic DMPC (dimyristoylphosphatidylcholine, 94&nbsp;mol-%) lipids&nbsp;in 1.0 M NaCl solution.</p> <p><strong>Number of DMPC:</strong>&nbsp;120.<br> <strong>Number of DMTAP:</strong>&nbsp;8.<br> <strong>Number of Na<sup>+</sup>-ions:</strong>&nbsp;89.<br> <strong>Number of Cl<sup>-</sup>-ions:</strong>&nbsp;97.<br> <strong>Number of waters:</strong>&nbsp;4921.</p> <p><strong>Lipid model:</strong>&nbsp;&#39;Berger&#39; united-atom [<em>Biophys. J.</em>&nbsp;<strong>72</strong>&nbsp;2002 (1997)] with&nbsp;DMTAP&nbsp;modification&nbsp;by&nbsp;Gurtovenko et al. [<em>Biophys. J.&nbsp;</em><strong>86</strong>&nbsp;3461 (2004)].<br> <strong>Water model:</strong>&nbsp;SPC [In&nbsp;<em>Intermolecular Forces,</em>&nbsp;ed. Pullman. 331 (1981)].</p> <p><strong>Simulation engine:</strong>&nbsp;Gromacs 3.x [www.gromacs.org]</p> <p><strong>Trajectory length:</strong>&nbsp;230 ns.<br> <strong>Previously equilibrated for:</strong>&nbsp;12&nbsp;ns.<br> <strong>Sampling rate:</strong>&nbsp;every 10 ps.</p> <p><strong>Time integration step:</strong>&nbsp;2 fs.</p> <p><strong>Thermodynamic ensemble:</strong>&nbsp;NpT.&nbsp;<br> <strong>Temperature coupling:</strong>&nbsp;&#39;Berendsen&#39; [<em>J. Chem. Phys.</em>&nbsp;<strong>81</strong>&nbsp;3684 (1984)] with lipids and water coupled separately at T = 323 K.<br> <strong>Pressure coupling: &#39;</strong>Berendsen&#39; [<em>J. Chem. Phys.</em>&nbsp;<strong>81</strong>&nbsp;3684 (1984)] with xy and z coupled separately at p = 1.0 bar.</p> <p><strong>Electrostatics:&nbsp;</strong>PME [<em>J. Chem. Phys.</em>&nbsp;<strong>98</strong>&nbsp;10089 (1993);&nbsp;<em>J. Chem. Phys.</em>&nbsp;<strong>103</strong>&nbsp;8577 (1995)], real-space cutoff at 1.0 nm.<br> <strong>Van der Waals:</strong>&nbsp;Truncated at 1.0 nm.</p> <p><strong>Constraints:&nbsp;</strong>Covalent bond lengths in lipids using LINCS [<em>J. Comput. Chem.</em>&nbsp;<strong>18</strong>&nbsp;1463 (1997)], in water using SETTLE [J. Comput. Chem.&nbsp;<strong>13</strong>&nbsp;952 (1992)].</p> <p><strong>Used in publications:&nbsp;</strong>[1]&nbsp;Markus S. Miettinen, Andrey A. Gurtovenko, Ilpo Vattulainen, and Mikko Karttunen: &quot;Ion Dynamics in Cationic Lipid Bilayer Systems in Saline Solutions&quot;.&nbsp;<em>J. Phys. Chem. B</em>&nbsp;<strong>113</strong>&nbsp;9226 (2009). DOI:&nbsp;10.1021/jp810233q. [2] Markus S. Miettinen: &quot;Computational Modeling of Cationic Lipid Bilayers in Saline Solutions&quot;. PhD Thesis.&nbsp;Aalto University School of Science and Technology, Helsinki, Finland. (2010). ISBN&nbsp;978-952-60-3194-1.</p>

opencc-by-4.0May 2016View details →
zenodo36/100

Molecular dynamics simulation trajectory of a cationic lipid bilayer: 75/25 mol% DMTAP/DMPC in 1.0 M NaCl

<p><strong>System:&nbsp;</strong>Symmetric bilayer of cationic&nbsp;DMTAP (dimyristoyltrimethylammoniumpropane, 75&nbsp;mol-%) and&nbsp;zwitterionic DMPC (dimyristoylphosphatidylcholine, 25&nbsp;mol-%) lipids&nbsp;in 1.0 M NaCl solution.</p> <p><strong>Number of DMPC:</strong>&nbsp;32.<br> <strong>Number of DMTAP:</strong>&nbsp;96.<br> <strong>Number of Na<sup>+</sup>-ions:</strong>&nbsp;96.<br> <strong>Number of Cl<sup>-</sup>-ions:</strong>&nbsp;192.<br> <strong>Number of waters:</strong>&nbsp;5304.</p> <p><strong>Lipid model:</strong>&nbsp;&#39;Berger&#39; united-atom [<em>Biophys. J.</em>&nbsp;<strong>72</strong>&nbsp;2002 (1997)] with&nbsp;DMTAP&nbsp;modification&nbsp;by&nbsp;Gurtovenko et al. [<em>Biophys. J.&nbsp;</em><strong>86</strong>&nbsp;3461 (2004)].<br> <strong>Water model:</strong>&nbsp;SPC [In&nbsp;<em>Intermolecular Forces,</em>&nbsp;ed. Pullman. 331 (1981)].</p> <p><strong>Simulation engine:</strong>&nbsp;Gromacs 3.x [www.gromacs.org]</p> <p><strong>Trajectory length:</strong>&nbsp;110 ns.<br> <strong>Previously equilibrated for:</strong>&nbsp;11 ns.<br> <strong>Sampling rate:</strong>&nbsp;every 10 ps.</p> <p><strong>Time integration step:</strong>&nbsp;2 fs.</p> <p><strong>Thermodynamic ensemble:</strong>&nbsp;NpT.&nbsp;<br> <strong>Temperature coupling:</strong>&nbsp;&#39;Berendsen&#39; [<em>J. Chem. Phys.</em>&nbsp;<strong>81</strong>&nbsp;3684 (1984)] with lipids and water coupled separately at T = 323 K.<br> <strong>Pressure coupling: &#39;</strong>Berendsen&#39; [<em>J. Chem. Phys.</em>&nbsp;<strong>81</strong>&nbsp;3684 (1984)] with xy and z coupled separately at p = 1.0 bar.</p> <p><strong>Electrostatics:&nbsp;</strong>PME [<em>J. Chem. Phys.</em>&nbsp;<strong>98</strong>&nbsp;10089 (1993);&nbsp;<em>J. Chem. Phys.</em>&nbsp;<strong>103</strong>&nbsp;8577 (1995)], real-space cutoff at 1.0 nm.<br> <strong>Van der Waals:</strong>&nbsp;Truncated at 1.0 nm.</p> <p><strong>Constraints:&nbsp;</strong>Covalent bond lengths in lipids using LINCS [<em>J. Comput. Chem.</em>&nbsp;<strong>18</strong>&nbsp;1463 (1997)], in water using SETTLE [J. Comput. Chem.&nbsp;<strong>13</strong>&nbsp;952 (1992)].</p> <p><strong>Used in publications:&nbsp;</strong>[1]&nbsp;Markus S. Miettinen, Andrey A. Gurtovenko, Ilpo Vattulainen, and Mikko Karttunen: &quot;Ion Dynamics in Cationic Lipid Bilayer Systems in Saline Solutions&quot;.&nbsp;<em>J. Phys. Chem. B</em>&nbsp;<strong>113</strong>&nbsp;9226 (2009). DOI:&nbsp;10.1021/jp810233q. [2] Markus S. Miettinen: &quot;Computational Modeling of Cationic Lipid Bilayers in Saline Solutions&quot;. PhD Thesis.&nbsp;Aalto University School of Science and Technology, Helsinki, Finland. (2010). ISBN&nbsp;978-952-60-3194-1.</p>

opencc-by-4.0May 2016View details →
zenodo36/100

Molecular dynamics simulation trajectory of a cationic lipid bilayer: 50/50 mol% DMTAP/DMPC in 0.1 M NaCl

<p><strong>System:&nbsp;</strong>Symmetric bilayer of cationic&nbsp;DMTAP (dimyristoyltrimethylammoniumpropane, 50 mol-%) and&nbsp;zwitterionic DMPC (dimyristoylphosphatidylcholine, 50 mol-%) lipids&nbsp;in 0.1 M NaCl solution.</p> <p><strong>Number of DMPC:</strong>&nbsp;64.<br> <strong>Number of DMTAP:</strong>&nbsp;64.<br> <strong>Number of Na<sup>+</sup>-ions:</strong>&nbsp;10.<br> <strong>Number of Cl<sup>-</sup>-ions:</strong>&nbsp;74.<br> <strong>Number of waters:</strong>&nbsp;5316.</p> <p><strong>Lipid model:</strong>&nbsp;&#39;Berger&#39; united-atom [<em>Biophys. J.</em>&nbsp;<strong>72</strong>&nbsp;2002 (1997)] with&nbsp;DMTAP&nbsp;modification&nbsp;by&nbsp;Gurtovenko et al. [<em>Biophys. J.&nbsp;</em><strong>86</strong>&nbsp;3461 (2004)].<br> <strong>Water model:</strong>&nbsp;SPC [In&nbsp;<em>Intermolecular Forces,</em>&nbsp;ed. Pullman. 331 (1981)].</p> <p><strong>Simulation engine:</strong>&nbsp;Gromacs 3.x [www.gromacs.org]</p> <p><strong>Trajectory length:</strong>&nbsp;190 ns.<br> <strong>Previously equilibrated for:</strong>&nbsp;21 ns.<br> <strong>Sampling rate:</strong>&nbsp;every 10 ps.</p> <p><strong>Time integration step:</strong>&nbsp;2 fs.</p> <p><strong>Thermodynamic ensemble:</strong>&nbsp;NpT.&nbsp;<br> <strong>Temperature coupling:</strong>&nbsp;&#39;Berendsen&#39; [<em>J. Chem. Phys.</em>&nbsp;<strong>81</strong>&nbsp;3684 (1984)] with lipids and water coupled separately at T = 323 K.<br> <strong>Pressure coupling: &#39;</strong>Berendsen&#39; [<em>J. Chem. Phys.</em>&nbsp;<strong>81</strong>&nbsp;3684 (1984)] with xy and z coupled separately at p = 1.0 bar.</p> <p><strong>Electrostatics:&nbsp;</strong>PME [<em>J. Chem. Phys.</em>&nbsp;<strong>98</strong>&nbsp;10089 (1993);&nbsp;<em>J. Chem. Phys.</em>&nbsp;<strong>103</strong>&nbsp;8577 (1995)], real-space cutoff at 1.0 nm.<br> <strong>Van der Waals:</strong>&nbsp;Truncated at 1.0 nm.</p> <p><strong>Constraints:&nbsp;</strong>Covalent bond lengths in lipids using LINCS [<em>J. Comput. Chem.</em>&nbsp;<strong>18</strong>&nbsp;1463 (1997)], in water using SETTLE [J. Comput. Chem.&nbsp;<strong>13</strong>&nbsp;952 (1992)].</p> <p><strong>Used in publications:&nbsp;</strong>[1]&nbsp;Markus S. Miettinen, Andrey A. Gurtovenko, Ilpo Vattulainen, and Mikko Karttunen: &quot;Ion Dynamics in Cationic Lipid Bilayer Systems in Saline Solutions&quot;.&nbsp;<em>J. Phys. Chem. B</em>&nbsp;<strong>113</strong>&nbsp;9226 (2009). DOI:&nbsp;10.1021/jp810233q. [2] Markus S. Miettinen: &quot;Computational Modeling of Cationic Lipid Bilayers in Saline Solutions&quot;. PhD Thesis.&nbsp;Aalto University School of Science and Technology, Helsinki, Finland. (2010). ISBN&nbsp;978-952-60-3194-1.</p>

opencc-by-4.0May 2016View details →
zenodo36/100

Molecular dynamics simulation trajectory of a cationic lipid bilayer: 75/25 mol% DMTAP/DMPC in 0.1 M NaCl

<p><strong>System:&nbsp;</strong>Symmetric bilayer of cationic&nbsp;DMTAP (dimyristoyltrimethylammoniumpropane, 75&nbsp;mol-%) and&nbsp;zwitterionic DMPC (dimyristoylphosphatidylcholine, 25&nbsp;mol-%) lipids&nbsp;in 0.1 M NaCl solution.</p> <p><strong>Number of DMPC:</strong>&nbsp;32.<br> <strong>Number of DMTAP:</strong>&nbsp;96.<br> <strong>Number of Na<sup>+</sup>-ions:</strong>&nbsp;10.<br> <strong>Number of Cl<sup>-</sup>-ions:</strong>&nbsp;106.<br> <strong>Number of waters:</strong>&nbsp;5476.</p> <p><strong>Lipid model:</strong>&nbsp;&#39;Berger&#39; united-atom [<em>Biophys. J.</em>&nbsp;<strong>72</strong>&nbsp;2002 (1997)] with&nbsp;DMTAP&nbsp;modification&nbsp;by&nbsp;Gurtovenko et al. [<em>Biophys. J.&nbsp;</em><strong>86</strong>&nbsp;3461 (2004)].<br> <strong>Water model:</strong>&nbsp;SPC [In&nbsp;<em>Intermolecular Forces,</em>&nbsp;ed. Pullman. 331 (1981)].</p> <p><strong>Simulation engine:</strong>&nbsp;Gromacs 3.x [www.gromacs.org]</p> <p><strong>Trajectory length:</strong>&nbsp;110 ns.<br> <strong>Previously equilibrated for:</strong>&nbsp;11 ns.<br> <strong>Sampling rate:</strong>&nbsp;every 10 ps.</p> <p><strong>Time integration step:</strong>&nbsp;2 fs.</p> <p><strong>Thermodynamic ensemble:</strong>&nbsp;NpT.&nbsp;<br> <strong>Temperature coupling:</strong>&nbsp;&#39;Berendsen&#39; [<em>J. Chem. Phys.</em>&nbsp;<strong>81</strong>&nbsp;3684 (1984)] with lipids and water coupled separately at T = 323 K.<br> <strong>Pressure coupling: &#39;</strong>Berendsen&#39; [<em>J. Chem. Phys.</em>&nbsp;<strong>81</strong>&nbsp;3684 (1984)] with xy and z coupled separately at p = 1.0 bar.</p> <p><strong>Electrostatics:&nbsp;</strong>PME [<em>J. Chem. Phys.</em>&nbsp;<strong>98</strong>&nbsp;10089 (1993);&nbsp;<em>J. Chem. Phys.</em>&nbsp;<strong>103</strong>&nbsp;8577 (1995)], real-space cutoff at 1.0 nm.<br> <strong>Van der Waals:</strong>&nbsp;Truncated at 1.0 nm.</p> <p><strong>Constraints:&nbsp;</strong>Covalent bond lengths in lipids using LINCS [<em>J. Comput. Chem.</em>&nbsp;<strong>18</strong>&nbsp;1463 (1997)], in water using SETTLE [J. Comput. Chem.&nbsp;<strong>13</strong>&nbsp;952 (1992)].</p> <p><strong>Used in publications:&nbsp;</strong>[1]&nbsp;Markus S. Miettinen, Andrey A. Gurtovenko, Ilpo Vattulainen, and Mikko Karttunen: &quot;Ion Dynamics in Cationic Lipid Bilayer Systems in Saline Solutions&quot;.&nbsp;<em>J. Phys. Chem. B</em>&nbsp;<strong>113</strong>&nbsp;9226 (2009). DOI:&nbsp;10.1021/jp810233q. [2] Markus S. Miettinen: &quot;Computational Modeling of Cationic Lipid Bilayers in Saline Solutions&quot;. PhD Thesis.&nbsp;Aalto University School of Science and Technology, Helsinki, Finland. (2010). ISBN&nbsp;978-952-60-3194-1.</p>

opencc-by-4.0May 2016View details →
zenodo36/100

Molecular dynamics simulation trajectory of a cationic lipid bilayer: 75/25 mol% DMTAP/DMPC in 0.5 M NaCl

<p><strong>System:&nbsp;</strong>Symmetric bilayer of cationic&nbsp;DMTAP (dimyristoyltrimethylammoniumpropane, 75&nbsp;mol-%) and&nbsp;zwitterionic DMPC (dimyristoylphosphatidylcholine, 25&nbsp;mol-%) lipids&nbsp;in 0.5 M NaCl solution.</p> <p><strong>Number of DMPC:</strong>&nbsp;32.<br> <strong>Number of DMTAP:</strong>&nbsp;96.<br> <strong>Number of Na<sup>+</sup>-ions:</strong>&nbsp;49.<br> <strong>Number of Cl<sup>-</sup>-ions:</strong>&nbsp;145.<br> <strong>Number of waters:</strong>&nbsp;5398.</p> <p><strong>Lipid model:</strong>&nbsp;&#39;Berger&#39; united-atom [<em>Biophys. J.</em>&nbsp;<strong>72</strong>&nbsp;2002 (1997)] with&nbsp;DMTAP&nbsp;modification&nbsp;by&nbsp;Gurtovenko et al. [<em>Biophys. J.&nbsp;</em><strong>86</strong>&nbsp;3461 (2004)].<br> <strong>Water model:</strong>&nbsp;SPC [In&nbsp;<em>Intermolecular Forces,</em>&nbsp;ed. Pullman. 331 (1981)].</p> <p><strong>Simulation engine:</strong>&nbsp;Gromacs 3.x [www.gromacs.org]</p> <p><strong>Trajectory length:</strong>&nbsp;110 ns.<br> <strong>Previously equilibrated for:</strong>&nbsp;11 ns.<br> <strong>Sampling rate:</strong>&nbsp;every 10 ps.</p> <p><strong>Time integration step:</strong>&nbsp;2 fs.</p> <p><strong>Thermodynamic ensemble:</strong>&nbsp;NpT.&nbsp;<br> <strong>Temperature coupling:</strong>&nbsp;&#39;Berendsen&#39; [<em>J. Chem. Phys.</em>&nbsp;<strong>81</strong>&nbsp;3684 (1984)] with lipids and water coupled separately at T = 323 K.<br> <strong>Pressure coupling: &#39;</strong>Berendsen&#39; [<em>J. Chem. Phys.</em>&nbsp;<strong>81</strong>&nbsp;3684 (1984)] with xy and z coupled separately at p = 1.0 bar.</p> <p><strong>Electrostatics:&nbsp;</strong>PME [<em>J. Chem. Phys.</em>&nbsp;<strong>98</strong>&nbsp;10089 (1993);&nbsp;<em>J. Chem. Phys.</em>&nbsp;<strong>103</strong>&nbsp;8577 (1995)], real-space cutoff at 1.0 nm.<br> <strong>Van der Waals:</strong>&nbsp;Truncated at 1.0 nm.</p> <p><strong>Constraints:&nbsp;</strong>Covalent bond lengths in lipids using LINCS [<em>J. Comput. Chem.</em>&nbsp;<strong>18</strong>&nbsp;1463 (1997)], in water using SETTLE [J. Comput. Chem.&nbsp;<strong>13</strong>&nbsp;952 (1992)].</p> <p><strong>Used in publications:&nbsp;</strong>[1]&nbsp;Markus S. Miettinen, Andrey A. Gurtovenko, Ilpo Vattulainen, and Mikko Karttunen: &quot;Ion Dynamics in Cationic Lipid Bilayer Systems in Saline Solutions&quot;.&nbsp;<em>J. Phys. Chem. B</em>&nbsp;<strong>113</strong>&nbsp;9226 (2009). DOI:&nbsp;10.1021/jp810233q. [2] Markus S. Miettinen: &quot;Computational Modeling of Cationic Lipid Bilayers in Saline Solutions&quot;. PhD Thesis.&nbsp;Aalto University School of Science and Technology, Helsinki, Finland. (2010). ISBN&nbsp;978-952-60-3194-1.</p>

opencc-by-4.0May 2016View details →
zenodo36/100

Supplementary files for: Jorge M G, Brennand T A. Measuring (subglacial) bedform orientation, one-dimensional size, and directional shape - method accuracy. PLOS ONE, revision phase.

<p>Supplementary files for Jorge M G, Brennand T A. Measuring (subglacial) bedform orientation, one-dimensional size, and directional shape - method accuracy. PLOS ONE, revision phase.</p> <p>Files: i) shapefile of longitudinal subglacial bedform dataset; ii) spreadsheet with signed error distributions.</p> <p>&nbsp;</p>

opencc-zeroJun 2016View details →
zenodo36/100

Data from: Jorge M G, Brennand T A. Measuring (subglacial) bedform orientation, one-dimensional size, and directional shape - method accuracy. Submitted to PLOS ONE, July 2015

<p>Georeferenced (EPSG 32610) vector file (shapefile format) containing the longitudinal subglacial bedform footprint dataset used in the study.<br /> &nbsp;</p>

opencc-zeroOct 2015View details →
zenodo36/100

Figure 7. - Palaemonyuna sp. n. Figure a holotype; figures b–n paratype (CCDB 4866, male, CL 5.5 mm). a anterior part of the carapace b right eye, dorsal view c left scaphocerite, ventral view d left mandible, ventral view e left maxillula, ventral view f left maxilla, ventral view g left second maxilliped, ventral view h left first maxilliped, ventral view i left first maxilliped, dorsal view j right third maxilliped, ventro-lateral view k right second pereiopod, ventro-lateral view l right first pereiopod, ventro-lateral view m right first chela, mesial view n right second chela, mesial view. Scale bar: a, c, k equal to 1 mm; others equal to 0.5 mm.

Figure 7. - Palaemonyuna sp. n. Figure a holotype; figures b–n paratype (CCDB 4866, male, CL 5.5 mm). a anterior part of the carapace b right eye, dorsal view c left scaphocerite, ventral view d left mandible, ventral view e left maxillula, ventral view f left maxilla, ventral view g left second maxilliped, ventral view h left first maxilliped, ventral view i left first maxilliped, dorsal view j right third maxilliped, ventro-lateral view k right second pereiopod, ventro-lateral view l right first pereiopod, ventro-lateral view m right first chela, mesial view n right second chela, mesial view. Scale bar: a, c, k equal to 1 mm; others equal to 0.5 mm.

opencc-by-4.0Feb 2017View details →
zenodo36/100

Figure 8. - Palaemonyuna sp. n. Figures i and m holotype; figures a–e, g, h, j–l paratype (CCDB 4866, male, CL 5.5 mm); figure f paratype (CCDB 4866, female, CL 5.5 mm). a left third pereiopod, lateral view b left fourth pereiopod, lateral view c distal portion of the left fifth pereiopod, lateral view d left fifth pereiopod, lateral view e left first pleopod, posterior view f left first pleopod, posterior view g left second pleopod, posterior view h left appendix masculina and appendix interna, posterior view i right posterior part of the abdomen, lateral view j pre-anal fig, ventral view k telson and uropods, dorsal view l distal part of the telson, dorsal view m left distal portion of the exopod of the uropod, dorsal view. Scale bar: a, b, d–g, i, k equal to 1 mm; c, j, m equal to 0.5 mm; h, l equal to 0.25 mm.

Figure 8. - Palaemonyuna sp. n. Figures i and m holotype; figures a–e, g, h, j–l paratype (CCDB 4866, male, CL 5.5 mm); figure f paratype (CCDB 4866, female, CL 5.5 mm). a left third pereiopod, lateral view b left fourth pereiopod, lateral view c distal portion of the left fifth pereiopod, lateral view d left fifth pereiopod, lateral view e left first pleopod, posterior view f left first pleopod, posterior view g left second pleopod, posterior view h left appendix masculina and appendix interna, posterior view i right posterior part of the abdomen, lateral view j pre-anal fig, ventral view k telson and uropods, dorsal view l distal part of the telson, dorsal view m left distal portion of the exopod of the uropod, dorsal view. Scale bar: a, b, d–g, i, k equal to 1 mm; c, j, m equal to 0.5 mm; h, l equal to 0.25 mm.

opencc-by-4.0Feb 2017View details →
zenodo36/100

Figure 1. - Nesting habitat of Xylocopanasalis; A nesting habitat of Xylocopanasalis on a makeshift roof of a restaurant in Suan Pheung district, Ratch Buri province, Thailand. The red arrows indicate locations where the bamboo culms were arranged ca. 2.50 m above the ground (1a and 1b). At the nest entrance, the female of Xylocopanasalis was dehydrating the nectar previously foraged (1c).

Figure 1. - Nesting habitat of Xylocopanasalis; A nesting habitat of Xylocopanasalis on a makeshift roof of a restaurant in Suan Pheung district, Ratch Buri province, Thailand. The red arrows indicate locations where the bamboo culms were arranged ca. 2.50 m above the ground (1a and 1b). At the nest entrance, the female of Xylocopanasalis was dehydrating the nectar previously foraged (1c).

opencc-by-4.0Feb 2017View details →
zenodo36/100

Figure 8. - Metasternal process (in the circle) and aedeagi of Dicronocephalusadamsidrumonti and Dicronocephalusadamsiadamsi. A, B, C, D Dicronocephalusadamsidrumonti (Tibet) E, F, G, H Dicronocephalusadamsidrumonti (Sichuan) I, J, K, L Dicronocephalusadamsiadamsi (South Korea) M, N, O, P Dicronocephalusadamsiadamsi (North Korea) Q, R, S, T Dicronocephalusadamsiadamsi (Dandong, China).

Figure 8. - Metasternal process (in the circle) and aedeagi of Dicronocephalusadamsidrumonti and Dicronocephalusadamsiadamsi. A, B, C, D Dicronocephalusadamsidrumonti (Tibet) E, F, G, H Dicronocephalusadamsidrumonti (Sichuan) I, J, K, L Dicronocephalusadamsiadamsi (South Korea) M, N, O, P Dicronocephalusadamsiadamsi (North Korea) Q, R, S, T Dicronocephalusadamsiadamsi (Dandong, China).

opencc-by-4.0Feb 2017View details →
zenodo36/100

Figure 1. - Linariatonzigii Lona in its locus classicus on Pizzo Arera (2000 m a.s.l., Bergamo, Italy). Photograph by S. Orsenigo.

Figure 1. - Linariatonzigii Lona in its locus classicus on Pizzo Arera (2000 m a.s.l., Bergamo, Italy). Photograph by S. Orsenigo.

opencc-by-4.0Feb 2017View details →
zenodo36/100

Data for manuscript Eye movements whilst walking improve local motion information - Durant S. & Zanker J. M.

<p>Scene camera videos with gaze position parked</p> <p>x,y gaze positions from all the videos</p> <p>summary description of which frames were used</p>

opencc-by-4.0Apr 2017View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

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