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Driving Forces of Extreme Updrafts Associated with Convective Bursts in the Eyewall of a Simulated Tropical Cyclone
<p>The model-simulated data used in this study are uploaded here. Due to the large number, the original simulation data are available on request (qnn_nancy@yahoo.com).</p>
Range-wide habitat use of the Harpy Eagle indicates four major tropical forest gaps in the Key Biodiversity Area network
<p>Quantifying habitat use is important for understanding how animals meet their requirements for survival and provides information for conservation planning. Currently, assessments of range-wide habitat use that delimit species distributions are incomplete for many taxa. The Harpy Eagle (Harpia harpyja) is a raptor of conservation concern, widely distributed across Neotropical lowland forests, that currently faces threats from habitat loss and fragmentation. Here, we use penalized logistic regression to identify species-habitat associations and predict habitat suitability based on a new International Union for the Conservation of Nature range metric, termed Area of Habitat. From the species-habitat model, we performed a gap analysis to identify areas of high habitat suitability in regions with limited coverage in the Key Biodiversity Area (KBA) network. Range-wide habitat use indicated that Harpy Eagles prefer areas of 70-75% evergreen forest cover, low elevation, and high vegetation species richness. Conversely, Harpy Eagles avoid areas of >10% cultivated landcover and mosaic forest, and topographically complex areas. Our species-habitat model identified a large continuous area of potential habitat across the pan-Amazonia region, and a habitat corridor from the Chocó-Darién ecoregion of Colombia running north along the Caribbean coast of Central America. Little habitat was predicted across the Atlantic Forest biome, which is now severely degraded. The current KBA network covered 18% of medium to high Harpy Eagle habitat exceeding a target biodiversity area representation of 10%, based on species range size. Four major areas of high suitability habitat lacking coverage in the KBA network were identified in north and west Colombia, western Guyana, and north-west Brazil. We recommend these multiple gaps of habitat as new KBAs for strengthening the current KBA network. Modelled area of habitat estimates as described here are a useful tool for large-scale conservation planning and can be readily applied to many taxa.</p>
Differential nutrient limitation and tree height control leaf physiology, supporting niche partitioning in tropical dipterocarp forests
<p><span>Revealing the mechanisms of environmental niche partitioning within lowland tropical forests is important for understanding the drivers of current species distributions and potential vulnerability to environmental change. Tropical forest structure and species composition change across edaphic gradients in Borneo over short distances. However, our understanding of how edaphic conditions affect tree physiology and whether these relationships drive niche partitioning within Bornean forests remains incomplete. </span></p> <p><span>This study evaluated how leaf physiological function changes with nutrient availability across a fine-scale edaphic gradient and whether these relationships vary according to tree height. Furthermore, we tested whether intraspecific leaf trait variation allows generalist species to populate a wider range of environments.</span></p> <p><span>We measured leaf traits of 218 trees ranging in height from 4 to 66 m from 13 dipterocarp species within four tropical forest types (alluvial, mudstone, sandstone, kerangas) occurring along an < 5km edaphic gradient in North Borneo. The traits measured included saturating photosynthesis (<em>A</em><sub>sat</sub>), maximum photosynthetic capacity (<em>V</em><sub>cmax</sub>), leaf dark respiration (<em>R</em><sub>leaf</sub>), leaf mass per area (LMA), leaf thickness, minimum stomatal conductance (<em>g</em><sub>dark</sub>) and leaf nutrient concentrations (N, P, Ca, K, Mg). </span></p> <p><span>Across all species, leaf traits varied consistently in response to soil nutrient availability across forest types except <em>R</em><sub>leaf_mass</sub>, [<em>Mg</em>]<sub>leaf</sub> and [<em>Ca</em>]<sub>leaf</sub>. Changes in photosynthesis and respiration rates were related to different leaf nutrients across forest types, with greater nutrient-use efficiency in more nutrient-poor environments. Generalist species partially or fully compensated reductions in mass-based photosynthesis through increasing LMA in more nutrient-poor environments. </span></p> <p><span>Leaf traits also varied with tree height, except <em>V</em><sub>cmax_mass</sub>, but only in response to height-related modifications of leaf morphology (LMA and leaf thickness). These height-trait relationships did not vary across the edaphic gradient, except for <em>A</em><sub>sat</sub>, [<em>N</em>]leaf, [<em>P</em>]<sub>leaf</sub> and [<em>K</em>]<sub>leaf</sub>. </span></p> <p><span>Our results highlight that modification of leaf physiological function and morphology act as important adaptations for Bornean dipterocarps in response to edaphic and vertical environmental gradients. Meanwhile, multiple nutrients appear to contribute to niche partitioning and could drive species distributions and high biodiversity within Bornean forest landscapes.</span></p>
Data from: Forest loss and treeless matrices cause the functional impoverishment of sapling communities in old-growth forest patches across tropical regions
<p>Landscape-level disturbances, such as forest loss, can profoundly alter the functional composition and diversity of biotic assemblages. In fact, the landscape-moderated functional trait selection (LMFTS) hypothesis states that landscape-level disturbances may act as environmental filters that select a set of species with disturbance-adapted attributes while causing the loss of species with disturbance-sensitive attributes, ultimately compromising ecosystem functioning. However, the impact of landscape patterns on the functional composition and diversity of tropical regenerating trees (saplings) is unknown.</p> <p>Using a multiscale approach to identify the best spatial scale (i.e. the scale of effect), we tested the effect of forest cover, matrix openness and forest patch density (fragmentation) on functional composition and functional diversity of tree saplings in old-growth forest patches (n = 59) in three Mexican rainforest regions with different degree of deforestation. For 368 species and ~23,000 individuals, we compiled information from global and national databases on six functional traits related to seed dispersal and plant establishment and calculated their community abundance-weighted mean (CWMs) and three complementary functional diversity indices.</p> <p>Forest loss and matrix openness reduced functional richness and evenness, but only in the two most deforested regions. Overall, fragmentation had contrasting effects on functional diversity and composition, but correlated negatively with some functional traits in the most deforested region. Importantly, in the regions with high-to-intermediate degree of deforestation, functional composition experienced major changes: maximum height, seed mass, fruit size and wood density decreased, and SLA increased, in forest patches surrounded by open matrices in highly deforested and fragmented landscapes. This caused a shift of community traits towards more disturbed-adapted attributes.</p> <p><em>Synthesis and applications</em>. In agreement with the LMFTS hypothesis, our results confirm that landscape modifications in regions undergoing high and long-lasting deforestation greatly impoverish the functional composition and diversity of sapling communities. The shift from communities composed mainly by conservative attributes towards communities with a higher prevalence of disturbance-adapted attributes disrupts the future community structure and jeopardizes critical ecosystem functions. Management practices focused on preventing deforestation, increasing forest cover, and promoting treed matrices are necessary to preserve the functionality of these species-rich but increasingly threatened rainforests.</p>
Niche conservatism limits the distribution of Medicago in the tropics
<p>The increase in species number from poles to the equator is one of the most fundamental patterns in ecology. Although several hypotheses have been proposed, there is a lack of consensus on the mechanisms underlying this pattern. While most hypotheses provide plausible explanation for high tropical diversity of tropical clades, it is unclear if similar mechanisms drive the diversity of extra-tropical clades. Here, we investigated the environmental drivers influencing the diversity pattern of a Mediterranean plant genus <em>Medicago</em> and dissect their effects across continents and biomes. We compiled a comprehensive dataset on the distribution of all <em>Medicago</em> species and mapped their distribution at the spatial resolution of 100 × 100 km<sup>2</sup>. We used generalized linear models to quantify the relative effects of environmental factors on the richness patterns of <em>Medicago</em> and its two life forms. Next, using geographically weighted regression, we explored the variation in richness-environment relationship across latitude. We found that Quaternary climate change and environmental energy were important explanatory variables, and their effects were consistent at global, continental and biome scales. However, we found contrasting effect of environmental energy in temperate and tropical regions, with species richness increasing with energy in the temperate and decreasing in the tropics. We also found strong affinity of <em>Medicago</em> species to its ancestral Mediterranean climatic niche. Our results suggest that the spatial variation in <em>Medicago</em> richness patterns may be strongly influenced by heat tolerance as opposed to the tropical clades that depend upon cold tolerance. This dependency on heat tolerance can be attributed to strong niche conservatism exhibited by <em>Medicago</em> species. Our findings provide new insights into the richness-energy hypothesis and suggest that high environmental energy may not necessarily yield high species diversity but may also lower species diversity, especially of extra-tropical clades towards the tropics.</p>
Demographic consequences of heterogeneity in conspecific density dependence among mast fruiting tropical trees
<p>The role of conspecific density dependence (CDD) in the maintenance of species richness is a central focus of tropical forest ecology. However, tests of CDD often ignore the integrated effects of CDD over multiple life-stages and their long-term impacts on population demography. We combined a 10-year time series of seed production, seedling recruitment and sapling and tree demography of three dominant Southeast Asian tree species that adopt a mast fruiting phenology. We used these data to construct individual-based models that examine the effects of CDD on population growth rates (λ) across life-history stages. Recruitment was driven by positive CDD for all species, supporting the predator satiation hypothesis, while negative CDD affected seedling and sapling growth of two species, significantly reducing λ. This negative CDD on juvenile growth overshadowed the positive CDD of recruitment, suggesting the cumulative effects of CDD during seedling and sapling development has greater importance than the positive CDD during infrequent masting events. Overall, CDD varied between positive and negative across life-history stages for all species, suggesting that assessments of CDD on transitions between just two stages (e.g. seeds-seedlings or juveniles-mature trees) likely misrepresents the importance of CDD on population growth and stability.</p>
Bottom-reached Near-inertial Waves Induced by the Tropical Cyclones, Conson and Mindulle, in the South China Sea
<p>This dataset contains the near-inertial velocity data observed by the mooring at 110.4°E, 17.1°N. It is supplementary to the paper "<strong>Bottom-reached Near-inertial Waves Induced by the Tropical Cyclones, Conson and Mindulle, in the South China Sea</strong>" submitted to the <em>Journal of Geophysical Research: Oceans</em>. </p>
Open habitats in a tropical biodiversity hotspot support pollinator diversity in both protected and unprotected areas
<p class="MsoNormal">Protected areas (PAs) are vital in the global effort to preserve biodiversity, particularly for disturbance-intolerant pollinator species in the tropics. As there is little information on the potential of PAs for pollinator conservation in sensitive tropical ecosystems, we assessed here insect pollinator diversity in protected vs. unprotected areas in two vegetation zones in Nigeria, within the West African Guinea Biodiversity Hotspot. We selected two land-use types based on predominant canopy cover type (open and tree-shaded habitats) and these were sampled in both protected and unprotected areas of tropical rain forest and savanna vegetation zones. Pollinator composition varied significantly between protected vs. unprotected areas in each vegetation zone, signifying both areas support unique assemblages of insect pollinators. However, pollinator diversity varied according to land-use type (open vs. shaded habitats) rather than protected area per se, such that pollinators were more abundant and species-rich in open habitat than shaded habitat. These findings emphasize that beyond the protection of ecosystems, fine scale habitat management promoting the availability of adequate floral resources in natural areas is critical for ensuring conservation of these pollinators in tropical ecosystems. </p>
Phenological status of plants in the very tropical dry forests of Curaçao
<p>Tropical dry plant formations comprise diverse forests found in areas that experience pronounced seasonal changes in precipitation. Across broad regions, variation in the amount and distribution of precipitation determine the availability of water, and thus differences in species composition and phenology. Within any given region hydrology and topographic position, and geologic substrate may underlie additional differences in forest attributes. Of these three factors, geologic substrate is the least understood but it has been suggested that its influence on tropical dry forests, and more broadly speaking tropical forests, results from a combination of mechanisms regulating the use of water and nutrients. Phenological studies at population, community, and system levels acknowledge the significance of plan phenology for different ecological processes. Thus, characterizing phenological patterns at multiple levels of biological organization as a function of geologic substrate is important to assess the diversity of behaviors, and ultimately vulnerability of tropical dry forests to climate change. A study conducted in Curaçao between September of 1992 to February of 1995 at three sites underlaing by different geologies provided a unique opportunity to investigate the extent to which plant phenology diverges in regions underlain by different geologies.</p>
Data set: The origin of sex differences in song in a tropical duetting wren
<p>The study of song development has focused on temperate zone birds in which typically only males sing. In the bay wren, Cantorchilus nigricapillus, both sexes sing, performing precisely timed, female-initiated duets in which birds alternate sex-specific song phrases. We investigated the origin of these sex differences by collecting bay wren eggs and nestlings and hand-raising them in individual acoustic isolation chambers. Each bird was tutored with either monophonic or stereophonic recordings of bay wren duets, or heard no song. As adults, each tutored bird individually sang complete duets, singing both male and female song phrases. On occasion, birds learned only the male or female part of a duet to which they were exposed. However, mono-tutored birds showed no sex-specificity in these solo songs, whereas stereo-tutored birds only sang solos consistent with their sex. In addition, stereo-tutored birds acquired songs over a longer period than did mono-tutored birds. In both groups, females showed more sex-specificity during the song learning process. Finally, we observed that tutored and acoustically isolated birds invented male-like songs, whereas only males invent songs in the wild. These results reveal the relative roles played by social versus innate influences in the development of sex-specific song in this species.</p>
Elevational patterns in tropical bryophyte diversity differ among substrates: a case study on Baru volcano, Panama
<p><strong>Questions. </strong>Bryophytes attain their highest diversity in tropical mountain forests. Although distribution patterns have been described, little emphasis has been placed on comparing patterns among substrates (e.g., terrestrial, epiphytic). Understanding these patterns is important, because they determine not only the pool of genetic resources, but also the functioning of these forest ecosystems. Therefore, we studied how bryophyte species diversity changes with elevation, how elevational patterns differ between substrate types, and how elevational trends relate to environmental drivers.</p> <p><strong>Location. </strong>Baru Volcano, Panama.</p> <p><strong>Methods. </strong>At each of eight elevations, between 1900 and 3300 m, bryophytes were collected in 600-cm<sup>2</sup> plots from six substrate types with four replicates. Species cover was registered as a measure of relative abundance. Species richness and community structure were determined and related to elevation, substrate types, and environmental drivers at three scales (plots, sets of four replicate plots per substrate per elevation, and all plots at each elevation).</p> <p><strong>Results. </strong>Bryophyte species richness decreased towards higher elevations, at all three scales and on all substrates except bryophytes on soil, for which, at the plot scale, richness peaked at higher elevations than on the other substrates. Relative humidity explained richness slightly better than elevation. Communities at the lowest elevations had the most uneven compositions, due to the presence of many small species with low abundance.</p> <p><strong>Conclusions. </strong>In studies on the spatial distribution of bryophyte diversity, it is essential to consider different substrates and spatial scales separately. If substrates differ in their elevational species-richness patterns, climate and land-use change may affect bryophyte diversity patterns not only directly, but also indirectly via changes in substrate availability. Therefore, a better understanding of the spatial variation in bryophyte diversity in mountains is essential to elucidate the effects of environmental change on this important group of plants and their implications for ecosystem functioning.</p> <p>FILE: Main data base_JVC.xlsx</p> <p>Sheet=TaxonomicInformation</p> <p>Our database contains taxonomic information on bryophyte species collected along an elevation gradient on the Baru volcano, Panama.</p> <p>Sheet=data</p> <p>The relative abundance of each species or morpho-species is included per 600-cm2 plot in each of the six considered substrates (soil = terricolous, rock = saxicolous, decomposing downed log (i.e. lying on the ground) = lignicolous, tree base = epiphytic on tree base, tree trunk = epiphytic on tree trunk, and understorey branch = epiphytic on branch).</p> <p>Sheet: climatic info<br> In addition, we present the information on the climate recorded between April and December 2017.<br> Acronyms: elev: elevation, tempmean: mean temperature over the measurement period (°C), tempmin: minimum temperature over the measurement period (°C), tempmax: maximum temperature over the measurement period (°C), rhmean: mean relative humidity over the measurement period (%), rhmin: minimum relative humidity over the measurement period (%), rhmax: maximum relative humidity over the measurement period (%), cancov: canopy-cover (%), heican: height of the canopy ( m).</p>
Dataset: Substantial organic and particulate nitrogen and phosphorus export from geomorphologically stable African tropical forest landscapes
<p>Raw chemical and stream data from the publication 'Substantial organic and particulate nitrogen and phosphorus export from geomophologically stable African tropical forest landscapes'. </p> <p>Data shows dissolved and particulate nitrogen and phosphorus concentrations of stream waters of two forested first order streams withing the Congo Basin. </p>
Functional diversity of farmland bees across rural-urban landscapes in a tropical megacity
Urbanization is a major threat to biodiversity and food security, as expanding cities, especially in the Global South, increasingly compete with natural and agricultural lands. However, the impact of urban expansion on agricultural biodiversity in tropical regions is overlooked. Here we assessed how urbanization affects the functional response of farmland bees, the most important pollinators for crop production. We sampled bees across three seasons in 36 conventional vegetable-producing farms spread along an urbanization gradient in Bengaluru, an Indian megacity. We investigated how landscape and local environmental drivers affected different functional traits (sociality, nesting behaviour, body size and specialization) and functional diversity (functional dispersion) of bee communities. We found that the functional responses to urbanization were trait specific with more positive than negative effects of grey area (sealed surfaces and buildings) on species richness, functional diversity and abundance of most functional groups. As expected, larger, solitary, cavity-nesting, and surprisingly, specialist bees benefitted from urbanization. In contrast to temperate cities, the abundance of ground-nesters increased in urban areas, presumably because larger patches of bare soil were still available besides roads and buildings. However, overall bee abundance and the abundance of social bees (85% of all bees) decreased with urbanization, threatening crop pollination. Crop diversity promoted taxonomic and functional diversity of bee communities. Locally, flower resources promoted the abundance of all functional groups, and natural vegetation could maintain diverse pollinator communities throughout the year, especially during the non-cropping season. However, exotic plants decreased functional diversity and bee specialization. To safeguard bees and their pollination services in urban farms, we recommend (1) to preserve semi-natural vegetation (hedges) around cropping fields to provide nesting opportunities for above-ground nesters, (2) to promote farm-level crop diversification of beneficial crops (e.g., pulses, vegetables and spices), (3) to maintain native natural vegetation along field-margins, (4) to control and remove invasive exotic plants that disrupt native plant-pollinator interactions. Overall, our results suggest that urban agriculture can maintain functionally diverse bee communities and, if managed in a sustainable manner, can be used to develop win-win solutions for biodiversity conservation of pollinators and food security in and around cities.
Determinism and stochasticity in the spatial-temporal continuum of ecological communities: the case of tropical mountains
<p>Ecological communities are assembled in a spatial-temporal continuum. However, we still have a poor understanding of the relative importance of different mechanisms structuring community composition (i.e., beta-diversity) in space and time. In this study, we start by introducing a conceptual model that capitalizes upon the core-occasional species concept to predict that the assembly process in tropical mountains is driven by the deterministic turnover of core species in space via habitat sorting, but the turnover of occasional species through time via stochastic events of colonization and local extinctions. We then propose a general analytical framework that allows assessing these predictions by partitioning the total variance of a species-by-site-by-time matrix (i.e., total beta-diversity) among its purely spatial (variation in space independent of time), purely temporal (variation in time independent of space), and spatiotemporal (i.e., variation across different sites across different moments in time) components. Through simulation models, we provided theoretical support that the proposed analytical framework is suitable to test the predictions derived from our conceptual model. We then used this framework to identify general patterns and quantify the relative importance of processes underlying the spatial and temporal organization of ten distinct insect metacommunities along a tropical elevational gradient. As predicted, we found that, across taxa, spatial beta-diversity was mainly explained by environmental variation alone: a pattern that indicates the spatial turnover of core species. In contrast, temporal beta-diversity could not be distinguished from the expectation of null models where communities are simply represented by random draws from species pools: a pattern that indicates a temporal turnover of occasional species within communities. Taken together, our findings illustrate how our conceptual model and quantitative framework can articulate a better understanding of community assembly in space and time.</p>
Data for: Elevated inbreeding in Heliconia tortuosa is determined by tropical forest stand age, isolation, and loss of hummingbird functional diversity
<p>Forest conversion and habitat loss are major threats to biological diversity. Forest regeneration can mitigate the negative effects of old growth forest loss on species diversity, but less is known about the extent to which forest loss reduces genetic diversity in remnant populations and whether secondary forests play a role in the maintenance of genetic diversity. We quantified genetic diversity in a tropical hummingbird-pollinated understory herb, <em>Heliconia tortuosa</em>, across a landscape mosaic of primary and secondary forest regrowth. Using microsatellite genotypes from >850 adult and juvenile plants within 33 forest patches and extensive bird surveys, we examined the effect of contemporary and historical landscape features including forest age (primary vs. secondary forest), stand isolation, and pollinator assemblages on genetic diversity and levels of inbreeding in <em>H. tortuosa</em>. We found that inbreeding was up to 3x higher in secondary forest, and this effect was amplified with reductions in primary forest in the surrounding landscape through reduced observed heterozygosity in isolated fragments. Inbreeding in forest patches was negatively correlated with the local frequency of specialist long-distance foraging traplining hummingbirds. Traplining hummingbirds therefore appear to facilitate mating among unrelated plants - an inference we tested using empirically parameterized simulations. Higher levels of inbreeding in <em>H. tortuosa</em> are therefore associated with reduced functional diversity of hummingbirds in secondary forests and forest patches isolated from primary forests. Our findings suggest a cryptic consequence of primary forest loss and secondary forest regeneration through the disruption of mutualistic interactions resulting in the erosion of genetic diversity in a common understory plant.</p>
Data set for: Leaf trait association in relation to herbivore defense, drought resistance, and economics in a tropical invasive plant
<p><strong><span>Premsie</span></strong><span>: </span><span>Exploring how functional traits vary and covary is important to understand plant responses to environmental change. However, we have limited understanding of the ways multiple functional traits vary and covary within invasive species.</span></p> <p><strong><span>Methods</span></strong><span>:</span> <span>We measured 12 leaf traits of an invasive plant <em>Chromolaena odorata</em>, associated with plant or leaf economics, herbivore defense, and drought resistance on 10 introduced populations from Asia and 12 native populations from America, selected across a broad range of climatic conditions, and grown in a common garden</span><span>.</span></p> <p><strong><span>Results</span></strong><span>: </span><span>Species'</span> <span>range and climatic conditions influenced leaf traits, but trait variation across climate space differed between the introduced and native ranges. Traits that confer defense against herbivores and drought resistance were associated with economic strategy, but the patterns differed by range. Plants from introduced populations that were at the fast-return end of the spectrum (high photosynthetic capacity) had high physical defense traits (high trichome density), whereas plants from native populations that were at the fast-return end of the spectrum had high drought escape traits (early leaf senescence and high percentage of withered shoots).</span></p> <p><strong> <span>Conclusions</span></strong><span>:</span> <span>Our results indicate that invasive plants can rapidly adapt to novel environmental conditions. <em>C. odorata</em> showed multiple different functional trait covariation patterns and clines in the native and introduced ranges. Our results emphasize that interaction between multiple traits or functions should be considered when investigating the adaptive evolution of invasive plants.</span></p>
The thermal niche and phylogenetic assembly of evergreen tree metacommunities in a mid-to-upper tropical montane zone
<p>Frost and freezing temperatures have posed an obstacle to tropical woody evergreen plants over evolutionary timescales. Thus, along tropical elevation gradients, frost may influence woody plant community structure by filtering out lowland tropical clades, and allowing extra-tropical lineages to establish at higher elevations.</p> <p>Here we assess the extent to which frost influences the taxonomic and phylogenetic structure of naturally-patchy evergreen forests (locally known as <em>shola</em>) along a mid-upper montane elevation gradient in the Western Ghats, India. Specifically, we examine the role of large-scale macroclimate and factors affecting local microclimates, including <em>shola</em> patch size and distance from <em>shola</em> edge, in driving <em>shola </em>metacommunity structure. We find that the <em>shola </em>metacommunity shows phylogenetic overdispersion with elevation, with greater representation of extra-tropical lineages above 2000m, and marked turnover in taxonomic composition of <em>shola </em>woody communities near the frost-affected forest edge above 2000m, from those below 2000m. Both minimum winter temperature and patch size were equally important in determining metacommunity structure, with plots inside very large <em>sholas </em>dominated by older tropical lineages, with many endemics. Phylogenetic overdispersion in the upper montane <em>shola </em>metacommunity thus resulted from tropical lineages persisting in the interiors of large closed frost-free <em>sholas</em>, where their regeneration niche has been preserved over time.</p>
Litter decomposition rates across tropical montane and lowland forests are controlled foremost by climate
<p>The "hierarchy of factors" hypothesis states that decomposition rates are controlled primarily by climatic, followed by biological and soil variables. Tropical montane forests (TMF) are globally important ecosystems, yet there have been limited efforts to provide a biome-scale characterization of litter decomposition. We designed a common litter decomposition experiment replicated in 23 tropical montane sites across the Americas, Asia, and Africa and combined these results with a previous study of 23 sites in tropical lowland forests (TLF). Specifically, we investigated (1) spatial heterogeneity in decomposition, (2) the relative importance of biological factors that affect leaf and wood decomposition in TMF and, (3) the role of climate in determining leaf litter decomposition rates within and across the TMF and TLF biomes. Litterbags of two mesh sizes containing <em>Laurus</em> <em>nobilis </em>leaves or birchwood popsicle sticks were spatially dispersed and incubated in TMF sites, for 3 and 7 months on the soil surface and at 10-15 cm depth. The within-site replication demonstrated spatial variability in mass loss. Within TMF, litter type was the predominant biological factor influencing decomposition (leaves > wood), with mesh and burial effects playing a minor role. When comparing across TMF and TLF, climate was the predominant control over decomposition, but the Yasso07 global model (based on mean annual temperature and precipitation) only modestly predicted decomposition rate. Differences in controlling factors between biomes suggest that TMF, with their high rates of carbon storage, must be explicitly considered when developing theory and models to elucidate carbon cycling rates in the tropics.</p>
Size-dependent intraspecific variation in wood traits has little impact on aboveground carbon estimates in a tropical forest landscape
<p>There is increasing evidence that intraspecific trait variation plays a role in governing rates of ecosystem functioning. While wood traits such as wood specific gravity (WSG) and wood carbon concentration (WCC) are key drivers of forest aboveground carbon (AGC) stocks, the sources of intraspecific variation in these wood traits and the consequences of this variation on AGC are poorly known, especially in the tropics.</p> <p>Here, we investigated intraspecific variation in wood specific gravity (WSG) and wood carbon concentration (WCC) from 556 individual trees belonging to 15 species that well characterize different successional stages of seasonal evergreen forests in Southeast Asia. Specifically, we tested the contribution of individual or species characteristics (tree size, growth rate and regeneration guilds) and local environmental conditions (topographic wetness index and successional stages) to intraspecific variation in WSG and WCC, and assessed the consequences of intraspecific variation in these wood traits on AGC estimates in 14 permanent forest plots established along a successional gradient in Khao Yai National park, Thailand.</p> <p>We found that tree size was the main driver of intraspecific variation in WSG and WCC as tree sizes increased from 10−100 cm in diameter, WSG increased by 7.3%, while WCC increased by 2.4% in heartwood, 1.6% and 2.7% in sapwood without and with volatile carbon included. There was no effect of the topographic wetness and other local environment condition in wood traits led to a slight overestimation of AGC in young secondary forests (+0.09 to +1.29%) and a small underestimation in older forests (-0.86 to -2.87%), but overall AGC estimates (13 of 14 forest plots) remained within error margins (the 95% interval).</p> <p>Our study provides evidence that tree size variation translates into intraspecific variability in wood traits, whereas local environmental conditions related to topography successional stages had no effect on wood trait variability. While size-dependent variation in WSG and WCC have largely been undocumented and thus ignored in forest carbon assessment approaches, we highlight that it has a limited impact on AGC estimates, indicating that it does not invalidate current forest carbon stock estimation approaches. </p>
Data set and analytic codes supporting "Length-biomass equations to allow rapid assessment of semi-aquatic bug biomass in tropical streams"
<p>Body size and biomass data of semi-aquatic bugs (Gerromorpha, Hemiptera) collected in a range of habitat types (oil palm, oil palm with buffer, logged forest, and old-growth forest) in the SAFE Project (Stability of Altered Forest Ecosystems) experimental area, Maliau Basin, and Danum Valley. The sites are located in Sabah, Malaysia. In this study, we developed length-biomass equations to estimate the biomass of semi-aquatic bugs.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.