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4,144 results for “ITS barcode”
FIGURE 6 in Six new species of Afrotropical Allodia (Diptera: Mycetophilidae): DNA barcodes indicate recent diversification with a single origin
FIGURE 6. The male terminalia of A. keurbosensis. A, left: dorsal view, right: ventral view; B, Gonostylus from inner side; C, Basal part of gonostylus. Scale bar = 1µm.
FIGURE 11. Identification tree. Neighbor-Joining analysis involving 20 in Six new species of Afrotropical Allodia (Diptera: Mycetophilidae): DNA barcodes indicate recent diversification with a single origin
FIGURE 11. Identification tree. Neighbor-Joining analysis involving 20 CO1 sequences. Evolutionary distances were calculated using the p-distance model. Abbreviations: M = male, F = female. Sequences retrieved from BOLD (Ratasingham & Hebert 2007) are labelled with Process ID (see Appendix 1). See methods for details.
FIGURE 10. Variation between Afrotropical Allodia, gonostylus from inner side. A, A in Six new species of Afrotropical Allodia (Diptera: Mycetophilidae): DNA barcodes indicate recent diversification with a single origin
FIGURE 10. Variation between Afrotropical Allodia, gonostylus from inner side. A, A. nyeriensis; B, A. mazumbaiensis; C, A. drakensbergensis; D, A. keurbosensis; E, A. jaschhofi; F, A. karkloofensis. Scale bar = 1µm.
FIGURE 9 in Six new species of Afrotropical Allodia (Diptera: Mycetophilidae): DNA barcodes indicate recent diversification with a single origin
FIGURE 9. The male terminalia of A. karkloofensis. A: left: dorsal view, right: ventral view, B: Gonostylus from inner side, C: Basal part of gonostylus. Scale bar = 1µm.
FIGURE 8 in Six new species of Afrotropical Allodia (Diptera: Mycetophilidae): DNA barcodes indicate recent diversification with a single origin
FIGURE 8. The female terminalia of A. jaschhofi. A, Lateral view; B, Dorsal view; C, Hypogynium, ventral view. Scale bar = 1µm.
FIGURE 4 in A new species of Rhinogobius (Pisces: Gobiidae), with analyses of its DNA barcode
FIGURE 4. Rhinogobius maxillivirgatus sp. n. A. Three-dimensional rendering of a paratype based on X-ray microtomography in lateral view, SNHM-F-2016040026, male, 28.0 mm SL; B. Five blotches along dorsal midline of holotype, SNHM-F-2017060018, female, 30.1 mm SL; C. Branchiostegal membrane with up to 20 red spots in fresh preservation of a paratype, SNHM-F-2016100025, male, 23.0 mm SL.
FIGURE 3 in A new species of Rhinogobius (Pisces: Gobiidae), with analyses of its DNA barcode
FIGURE 3. Head lateral-line system of holotype (SNHM-F-2017060018, female, 30.1 mm SL) of Rhinogobius maxillivirgatus sp. n. in A. dorsal, B. lateral, and C. ventral views. Arrow shows ventral edge of gill slit. an, pn, anterior and posterior nares; other characters indicate cephalic canal pores and sensory papillae.
FIGURE 5 in A new species of Rhinogobius (Pisces: Gobiidae), with analyses of its DNA barcode
FIGURE 5. Maximum likelihood tree of Rhinogobius maxillivirgatus sp. n., with congeners based on sequences of full length of cytochrome c oxidase subunit I. The values at nodes are bootstrap support values.
FIGURE 2. Rhinogobius maxillivirgatus A in A new species of Rhinogobius (Pisces: Gobiidae), with analyses of its DNA barcode
FIGURE 2. Rhinogobius maxillivirgatus A. Holotype, SNHM-F-2017060018, Female, 30.1 mm SL, a tributary of upper reach of Changjiang River, Qimen County, Anhui Province, China; B. Paratype, SNHM-F-2016040025, Male, 30.8 mm SL; C. Male adult at type locality; D. Female adult at type locality.
Supplementary material 2 from: Adeoba MI, Kabongo R, Van der Bank H, Yessoufou K (2018) Re-evaluation of the discriminatory power of DNA barcoding on some specimens of African Cyprinidae (subfamilies Cyprininae and Danioninae). ZooKeys 746: 105-121. https://doi.org/10.3897/zookeys.746.13502
Table S2 : Explanation note: List of 315 Cyprinidae specimens analysed in this study. Full names, voucher information, and geographic origins are presented. Accession numbers for ACDB (African Centre for DNA Barcoding at the University of Johannesburg), GenBank, and BOLD are also included.
Supplementary material 3 from: Adeoba MI, Kabongo R, Van der Bank H, Yessoufou K (2018) Re-evaluation of the discriminatory power of DNA barcoding on some specimens of African Cyprinidae (subfamilies Cyprininae and Danioninae). ZooKeys 746: 105-121. https://doi.org/10.3897/zookeys.746.13502
Table S3 : Explanation note: Matrix of the morphological characters used for character mapping along a phylogeny. Details of the characters (1–6) and sources are provided at the bottom of the table..
Supplementary material 1 from: Binh HT, Ngoc NV, Tagane S, Toyama H, Mase K, Mitsuyuki C, Strijk JS, Suyama Y, Yahara T (2018) A taxonomic study of Quercus langbianensis complex based on morphology, and DNA barcodes of classic and next generation sequences. PhytoKeys 95: 37-70. https://doi.org/10.3897/phytokeys.95.21126
Figure S1, S2 : Explanation note: Figure S1. Bayesian phylogeny of 29 samples of Quercus and one Trigonobalanus (outgroup) based on ITS sequences. Branches are labeled with posterior probabilites. Figure S2. Bayesian phylogeny of 29 samples of Quercus and one Trigonobalanus (outgroup) based on concatenated rbcL and matK sequences. Branches are labeled with posterior probabilities.
Supplementary material 1 from: Morigengaowa, Luo J-J, Knapp R, Wei H-J, Liu B-D, Yan Y-H, Shang H (2018) The identity of Hypolepis robusta, as a new synonym of Hypolepis alpina (Dennstaedtiaceae), based on morphology and DNA barcoding and the new distribution. PhytoKeys 96: 35-45. https://doi.org/10.3897/phytokeys.96.23470
Table S1 : Explanation note: Herbarium specimens information of Hypolepis alpina and Hypolepis robusta samples checked in this study.
Supplementary material 1 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2018) A DNA barcode library for ground beetles of Germany: the genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae). ZooKeys 759: 57-80. https://doi.org/10.3897/zookeys.759.24129
Barcode analysis using the BOLD workbench : Explanation note: Molecular distances based on the Kimura 2-parameter model of the analysed specimens of the studied species of the genera Amara and Zabrus. Divergence values were calculated for all studied sequences, using the Nearest Neighbour Summary implemented in the Barcode Gap Analysis tool provided by the Barcode of Life Data System (BOLD). Align sequencing option: BOLD aligner (amino acid based HMM), ambiguous base/gap handling: pairwise deletion. ISD = intraspecific distance. BINs are based on the barcode analysis from 15-01-2018. Asterisks indicate species not recorded from Germany. Species pairs with interspecific distances <2.2% are marked in bold.
Supplementary material 2 from: Raupach MJ, Hannig K, Morinière J, Hendrich L (2018) A DNA barcode library for ground beetles of Germany: the genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae). ZooKeys 759: 57-80. https://doi.org/10.3897/zookeys.759.24129
Neighbour joining topology : Explanation note: Neighbour joining phylogram of all analysed ground beetle specimen based on Kimura 2-parameter distances. Individuals are classified using ID numbers from BOLD and species name. Numbers next to nodes represent non-parametric bootstrap values (1,000 replicates, in %).
FIGURES 11–20 in DNA barcoding and an updated key to the genus Hesperentomon (Protura: Acerentomata: Hesperentomidae), with a new species from Northwest China
FIGURES 11–20. Hesperentomon bolense sp. n. (Holotype, BL1705D): 11. Head; 12. Canal of maxillary gland; 13. Maxillary palpus; 14. Labial palpus; 15. Foretarsus, exterior view; 16. Foretarsus, interior view; 17. Prosternum; 18. Pronotum; 19. Mesonotum (BL1702D); 20. Mesosternum (BL1702D). Arrows show pores. Scale bar: 20 µm.
FIGURES 1–10 in DNA barcoding and an updated key to the genus Hesperentomon (Protura: Acerentomata: Hesperentomidae), with a new species from Northwest China
FIGURES 1–10. Hesperentomon bolense sp. n. (Holotype, BL1705D): 1. Habitus; 2. Head, dorsal view; 3. Striate band; 4. Urosternite I; 5. Urotergite I; 6. Urosternite II; 7. Urotergite II; 8. Urosternite IV; 9. Urosternite VII; 10. Urotergite VII (BL1702D). Scale bar: 1, 100 µm, 2–10, 20 µm.
FIGURE 28 in DNA barcoding and an updated key to the genus Hesperentomon (Protura: Acerentomata: Hesperentomidae), with a new species from Northwest China
FIGURE 28. Phylogenetic relationships of Hesperentomon. The tree was inferred using the Neighbor-Joining method in MEGA7 (Kumar et al. 2016). Bootstrap values (1000 replicates) are indicated at the nodes. Species names, voucher numbers and GenBank accession numbers are given at each branch tip.
FIGURES 21–27 in DNA barcoding and an updated key to the genus Hesperentomon (Protura: Acerentomata: Hesperentomidae), with a new species from Northwest China
FIGURES 21–27. Hesperentomon bolense sp. n. (Holotype, BL1705D): 21. Metanotum; 22. Metasternum; 23. Female squama genitalis (BL1702D); 24. Male squama genitalis; 25. Comb. 26. Tergites VIII–XII; 27. Sternites VIII–XII. Arrows show pores. Scale bar: 20 µm.
FIGURE 3 in DNA barcoding of the Italian anecic Octodrilus species in rural (vineyard) and forested areas with description of Octodrilus zicsiniello sp. nov. (Clitellata, Megadrili)
FIGURE 3. Octodrilus zicsiniello sp. nov. A. VEnTroLATErAL vIEw of ThE forE-body. CL = cLITELLUM, Mp = MALE porE, Tb = TUbErcULA pUbErTATIs. B. SETAL ArrAngEMEnTs. AA, Ab, bc, cd, cd rEfEr To sETAL InTErvALs. C. SAgITTAL sEcTIon of ThE gEnITAL rEgIon. s = sEpTUM, sf = spErM fUnnELs, Ts = TEsTIs sAc, vEs 9 = vEsIcLE In 9, vEs 12 = vEsIcLE In 12.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.