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3,172 results for “Publications”
Replication files for the publication "The Global Long-Term Effects of Storm Surge Flooding on Human Settlements in Coastal Areas"
<p>This repisority contains code and data to replicate the main results of the publication Kunze & Strobl (forthcoming) "The Global Long-Term Effects of Storm Surge Flooding on Human Settlements in Coastal Areas".</p>
HRM practices in public administration
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Metadata of sampling strategy during metabarcoding analysis (Journal publication supplement)
<p>The table presents supplementary materials and contains metadata of sampling strategy during metabarcoding analysis of four types of substrates in two ombrotrophic bog habitats, with other experimental and environmental parameters included in analyses. </p>
Data set for the publication
<p>Data set for the publication</p> <p>"Network-based analysis of heterogeneous patient-matched brain and extracranial melanoma metastasis pairs reveals three homogeneous subgroups"</p>
Supplementary material for publication "Optimizing combined tours: The truck-and-cargo-bike case"
<p>Supplementary material for publication "Optimizing combined tours: The truck-and-cargo-bike case" in OR Spectrum.</p> <p>Includes datasets I_1, I_2_W and I_2_M for different values of delta and n and results for the MIP formulations and heuristics.</p> <p> </p> <p> </p> <p>https://doi.org/10.1007/s00291-024-00754-2</p>
Data set for the publication
<p>Data set for the publication</p><p>Identification and validation of novel snoRNA-based biomarkers for clear cell renal cell carcinoma from urine-derived extracellular vesicles</p><p> </p>
Data used in "Biologically informed deep neural network for prostate cancer discovery" publication
<p>Data used in the publication titled "<strong>Biologically informed deep neural network for prostate cancer discovery </strong>" </p> <p>Elmarakeby, Haitham A., et al. "Biologically informed deep neural network for prostate cancer discovery." <em>Nature</em> 598.7880 (2021): 348-352.</p> <p>These datasets were derived from the following public domain resources:</p> <ol> <li>Armenia J, Wankowicz SAM, Liu D, Gao J, Kundra R, Reznik E, et al. The long tail of oncogenic drivers in prostate cancer. Nat Genet. 2018;50: 645–651. DOI: <a href="https://doi.org/10.1038/s41588-018-0078-z">10.1038/s41588-018-0078-z</a></li> <li>Fraser M, Sabelnykova VY, Yamaguchi TN, Heisler LE, Livingstone J, Huang V, et al. Genomic hallmarks of localized, non-indolent prostate cancer. Nature. 2017;541: 359–364. https://doi.org/10.1038/nature20788</li> <li>Robinson DR, Wu Y-M, Lonigro RJ, Vats P, Cobain E, Everett J, et al. Integrative clinical genomics of metastatic cancer. Nature. 2017;548: 297–303. https://doi.org/10.1038/nature23306</li> <li>Fabregat A, Jupe S, Matthews L, Sidiropoulos K, Gillespie M, Garapati P, et al. The Reactome Pathway Knowledgebase. Nucleic Acids Res. 2018;46: D649–D655. DOI: <a href="https://doi.org/10.1093/nar/gkv1351">10.1093/nar/gkv1351</a></li> </ol> <p> </p>
Public data for SparseFLIM
<p>Experimental datasets for training and testing <a href="https://github.com/shenblin/SparseFLIM">SparseFLIM</a>, which include label-free FLIM data.</p> <p>If you find our work and data helpful to you, please cite the corresponding work: <a href="https://doi.org/10.1038/s42003-024-07080-x">Shen, B., Lu, Y., Guo, F. et al. Overcoming photon and spatiotemporal sparsity in fluorescence lifetime imaging with SparseFLIM. Commun Biol 7, 1359 (2024)</a>. </p>
Software Engineers Engagement and Job Satisfaction: A Survey with Practitioners Working Remotely in a Public Organization - Supplementary material
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Replication package for `How Do Voters Respond to Welfare vis-a-vis Public Good Programs? Theory and Evidence of Political Clientelism'
<p>Contents of Replication Package:</p> <p>Readme file, Data Dictionary, Household Codes (do, csv and dta files), VillageYear Codes (do, csv and data files), folders containing maps, survey details and replication output</p>
Dataset related to publication: "Bromo-substituted indirubins for inhibition of protein kinase-mediated signalling involved in inflammatory mediator release in human monocytes"
<p>Dataset related to publication: Bachmann et al. "Bromo-substituted indirubins for inhibition of protein kinase-mediated signalling involved in inflammatory mediator release in human monocytes". Bioorganic Chemistry (2024) https://doi.org/10.1016/j.bioorg.2024.107470 </p> <ul> <li>Full Desmond MD simulation trajectories of the 10 replica simulations of compounds <strong>1</strong> and <strong>2</strong> bound to GSK-3beta (.zip files contain the -out.cms file and the trajectory)</li> <li>Maestro Glide XP docking output pose viewer files of compounds <strong>1 </strong>and <strong>2</strong> for CDKs (PDB IDs in the filenames)(.maegz -files)</li> </ul>
Wildfire-related publications (1980-2022) associated main figure data
<p>The data for the main figures are uploaded to this repository as their names represent.</p>
public-transport-structure-analysis-data
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The public part of the interview extractions as thematic codings: used for the consumer behavior study
<p>Extractions from interview transcripts created by the thematic analysis, this data is part of the interview study done on consumer energy behavior during price hikes,</p>
Data for the publication: Effects of turbulence on upper tropospheric ice supersaturation
<p>This repository contains the data sets shown in the above research study to appear in the Journal of Atmospheric Sciences. The Grace plot files contain ASCII data shown in figures 2-5 of that publication.</p>
Cooperation in public goods game does not require assortment and depends on population density
<p>The threshold public goods game is one of the best-known models of nonlinear public goods dilemmas. Cooperators and defectors typically coexist in this game when the population is assumed to follow the so-called structured deme model. In this paper we develop a dynamical model of a general N-player game in which there is no deme structure: individuals interact with randomly chosen neighbours and selection occurs between randomly chosen pairs of indi- viduals. We show that in the deterministic limit the dynamics in this model leads to the same replicator dynamics as in the structured deme model, i.e. coexistence of cooperators and defectors is typical in threshold public goods game even when the population is completely well-mixed. We extend the model to study the effect of density dependence and density fluctuation on the dynamics. We show analytically and numerically that decreasing population density increases the equilibrium frequency of cooperators till the fixation of this strategy, but below a critical density coop- erators abruptly disappear from the population. Our numerical investigations show that weak density fluctuations enhance cooperation, while strong fluctuations suppress it.</p>
Dataset of publicly funded R&D projects in the Valencian region
<p>The excel file contains information on R&D collaborations in the Valencian region, which received funding from AVI or IVACE in the time period 2016-2022. The following open calls are taken into consideration: (1) Strategic projects in cooperation, (2) Consolidation of the business value chain, (3) R&D in cooperation.</p> <p>The data was collected as part of Marie Skłodowska-Curie Policies for Smart Specialisation (POLISS) research network (<a href="https://poliss.eu/" rel="nofollow">https://poliss.eu</a>). This project has received funding from the European’s Union H2020 Research and Innovation Programme under Grant Agreement No 860887.</p>
Code and exemplificative data for publication titled: Synaptic inputs to motor neurons underlying muscle co-activation for functionally different tasks have different spectral characteristics.
<p>Code implemented in the publication</p> <p>Titled: Synaptic inputs to motor neurons underlying muscle co-activation for functionally different tasks have different spectral characteristics</p> <p>Authors: Borzelli,D; Vieira,TMM; Botter,A; Gazzoni,M; Lacquaniti,F; d’Avella,A</p> <p>Published in: Journal of Neurophysiology</p> <p>Year: 2024</p> <p>When running the function 'coherenceAnalysis_Borzelli_et_al_JNeurophysiol_2024.m', the code load the firings of the motor units identified during two exemplificative trials performed by a participant, saved in 'data_Borzelli_et_al_JNeurophysiol_2024'. One trial was directed toward an horizontal target of the perturbed block and the other was directed toward a supination target of the baseline block.</p> <p>Then the code calculates the coherence between the MUs identified on the BB and on the TB (cross-muscle coherence) and the cross-muscle coherence after excluding the components synchronized with the norm of the endpoint force.</p> <p>Finally, the code plots the results.</p> <p>This code could easily be modified to compute all the relevant analyses presented in the paper, such as the total within muscle coherence and the within muscle coherences after excluding the components synchronized with the norm of the force or the sum of the firings of the antagonist muscle.</p>
Raw data of the publication ''Radical' differences between two FLIM microscopes affect interpretation of cell signaling dynamics'
<p>Raw data and data used to create the figures.</p>
Source Data for the publication "Sub-100-fs energy transfer in coenzyme NADH is a coherent process assisted by a charge-transfer state"
<p>Molecular Structures for solvated NADH. </p> <p>The folder "QMMM_OPTIMIZED_STRUCTS" contains the pdb files of the six representatives for the three conformational clusters obtained after REMD used in the Supplementary Information.</p> <p>The folder "SOLVENT_ENSEMBLE_AROUND_FIXED_SOLUTE" conatins AMBER RESTART files for 200 solvent configurations around two cluster reps displayed in Figure 2 of main manuscript. </p> <p>The folder "PARAMETERS_FOR_MLMCTDH" contains the input file, operator file and parameters for ML-MCTDH dynamics for the structures shown in Main Manuscript and Supplementary. </p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.