Find research datasets worth reusing

opencc-by-4.0Apr 2024View details →

Data for publication: Developing self-calibrating system for fiber Bragg grating based guided wave sensing under changing temperature conditions

Data for section 3 and section 4 Figure 7- Figure 12 i n. txt format for easy viewing without need for special licenses The work related to the automated system was supported by the Project ‘Guided waves based reference-free SHM using fiber Bragg grating sensors (REFFREE)’ (2020/39/D/ST8/00188) Granted by National Science Center, Poland.

Processed dataset used for developing tsunami inundation emulators(Part-III Simulation and Emulation Dataset)

<div> <div>This dataset is related to the main Zenodo repository: https://doi.org/10.5281/zenodo.13738078</div> <div>This dataset contains some of the processed datasets covering tsunami inundation depths using simulation results and emulation results discussed in the article - "Towards Using Machine Learning Emulation for Probabilistic Inundation Mapping: Multiple Earthquake Sources and Near-field Effectwith project repo - https://github.com/naveenragur/ML4SicilyTsunami/tree/ptha_emulators.</div> <div>The post-processed (numpy) files for the two test locations of Catania(CT) and Siracusa(SR) are provided in compressed gzip files(.gz):</div> <div>Processed inundation depth files from simulation and emulation typically stored in model/CT/ptha or model/SR/ptha</div> <div>    -pthaSR.tar.gz - max inundation depth1d(eve x m) for true(simulation and pred(emulation of different models))</div> <div>    -pthaCT.tar.gz - max inundation depth1d(eve x m) for true(simulation and pred(emulation of different models))</div> <div>The filename follows the nomenclature with:</div> -true - simulation results</div> <div>-pred - emulator with pretraining</div> <div>-pred_direct - emulator without pretraining</div> <div>-pred_nodeform - emulator without pertaining and deformation input</div> <div> <div> <div>More information on the attached readme, see project structure and code is available at:</div> <div>https://github.com/naveenragur/ML4SicilyTsunami/tree/ptha_emulators</div> </div> </div>

(12)-Pereyra2024A-DS0001--0009 – Nine Tribolium castaneum long-term live imaging datasets of embryonic development acquired with light sheet fluorescence microscopy

(12)-Pereyra2024A-DS0001--0009 – Nine Tribolium castaneum long-term live imaging datasets of embryonic development acquired with light sheet fluorescence microscopy

opencc-by-4.0Jun 2024View details →

CRABS CLAW-independent floral nectary development in Penstemon barbatus

Data and Scripts for the "CRABS CLAW-independent floral nectary development in Penstemon barbatus" manuscript.   Scripts: <ol> <li>fastp.sh - filter and quality trim reads using fastp on all samples</li> <li>1ribo_detect.sh - detect and filter rRNA. Example script for 1 sample.</li> <li>gffread.sh - convert P. barbatus genome annotation GFF to a GTF for use in STAR</li> <li>star_initalize.sh - initalize STAR for the P. barbatus genome</li> <li>1star_ribo.sh - Example script for aligning reads from 1 sample to the genome.</li> <li>htseq_ribo.sh - counting reads for each sample using HTseq</li> <li>deseq2_code.R - R script for running the transcriptome tissue comparisons in DEseq2 with the output from HTseq.</li> <li>deseq_PCA.R - R script for the generation of the PCA plots for the samples. To be used in conjuction with the deseq2_code.R script.</li> <li>20230321_topGO_script.R - R script for Gene Ontology analyses in topGO.</li> <li>area_perimeter_cor.R - R script for vasculature ANOVAs.</li> </ol>   Data: <ol> <li>Genome files <ul> <li>4_LG_2022_maker.all.maker.proteins.fasta - protein sequences for all genes in the P. barbatus genome in Wessinger et al. 2023</li> <li>4_LG_2022_maker.all.maker.noseq.gff - GFF file for all genes in the P. barbatus genome in Wessinger et al. 2023</li> </ul> </li> <li>HTseq output trimmed to only the counts (excludes other log information) - trimmed_htseq_35404342.txt</li> <li>DEseq2 output  <ul> <li>Early stage <ul> <li>barb_early_nect_nonect_FDR0.01_LFC0.csv</li> <li>barb_early_nect_nonect_FDR0.01_LFC0.annotated.csv</li> </ul> </li> <li>Late stage <ul> <li>barb_late_nect_nonect_FDR0.01_LFC0.csv</li> <li>barb_late_nect_nonect_FDR0.01_LFC0.annotated.csv</li> </ul> </li> <li>Nectar removal <ul> <li>barb_stage5_6_FDR0.01_LFC0.csv</li> <li>barb_stage5_6_FDR0.01_LFC0.annotated.csv</li> </ul> </li> </ul> </li> <li>Orthofinder output - N0.tsv</li> <li>Vasculature raw data - 20231025_bud_measurements_pbarb.csv</li> <li>Archive_Images directory - contains raw section images stained with either Alcian Blue & Safranin O or </li> </ol>

Development of Ensemble Steric and Electrostatic Chirality (ESEC) descriptors for modelling chromatographic enantioseparations

For example for the Excel file with the title "Borate_chiral_explicit_biased_charged_uncharged.xlsx": - In the first tab, titled "Exp_water_acn_biased_charge", you can find the biased chiral descriptors for the molecules in their pH 9 state, simulated in explicit solvent.  - In the second tab, titled "Exp_water_acn_biased_uncharged", you can find the biased chiral descriptors for the molecules in their uncharged state, simulated in explicit solvent.  - The third tab, titled "Chiral log alfaRS charge uncharge", includes the responses (log αRS and αRS), along with the retention times and retention factors (k) for each molecule. In addition, this tab contains the descriptors from both the first and the second tab. - The fourth and the fifth tabs present the experimental and predicted responses (log αRS in the fourth tab and αRS in the fifth tab) for the models that were built.  The structure of the other files follows a similar pattern: the first tabs provide the descriptor values, followed by a tab containing the modelling information (response(s) and various descriptor sets) and finally, a tab is included with the predicted response values.

opencc-by-4.0Nov 2023View details →

Data set of axle loads and distances for operating passenger and freight trains for development of load models

Train data for moving load models of operating trains (5,007 passenger trains and 139,182 freight trains). <ul> <li>axle distances [m] and axle loads [kN] for all trains included in zip-files as txt-files</li> <li>information on line categories (DIN EN 15528), loadcases and maximum speeds for passenger trains (and assignment to passenger train numbers in previous version of publication (used for development of load model)) in xlsx-file</li> </ul>

CodePori: Large Scale System for Autonomous Software Development by Using Multi-Agents

This dataset accompanies the paper "CodePori: A Large-Scale System for Autonomous Software Development Using Multi-Agents." The dataset is recorded in an MS Excel file, which contains the following sheets, with a brief description of each provided below: <ol> <li> Selected Projects: Contains the descriptions of the 20 selected projects along with the GitHub URL for each. </li> <li> Modifications: Contains details of the modifications made to the projects to ensure successful execution. </li> <li> Outputs: Contains the output for each project. </li> <li> Failed Projects: Contains data on the projects that failed. </li> </ol>

opencc-by-4.0Oct 2021View details →

Connectomes across development reveal principles of brain maturation

These data sets belong to the following publication: Witvliet, D., Mulcahy, B., Mitchell, J.K. et al. Connectomes across development reveal principles of brain maturation. Nature 596, 257–261 (2021). https://doi.org/10.1038/s41586-021-03778-8 Please read the README.md file before using these data sets.

Developing National Identity Scale: As Indonesian Case

Background: National identity is an important concept to be developed, so it is necessary to have a measurement instrument with evidence of validity and reliability. Thus, the accuracy of the information obtained through the measurement of this instrument will be guaranteed.   Objective: This article aims to test the psychometric properties of the national identity scale to fulfil the standardization of good measurement.   Method: In this study, three analytical approaches were used: content validity involving eight subject matter experts (SME), confirmatory factor analysis (CFA), and reliability analysis. For the reliability and CFA approach, 300 students were used as samples taken through the convenience sampling technique.   Result: The analysis results show that out of the 20 items compiled in the content validity analysis, one item is inadequate because it has a below standard score on Aiken's coefficient of validity. This one item was revised again to be included in the tryout and data collection for the following analysis stage. The results of the CFA analysis show that the model and data are fit, and there are two inadequate items. At the same time, the contribution of the three factors on the national identity scale is significant. In the third analysis, it was found that adequate coefficient reliability affected the low standard error measurement (SEM).   Conclusion: Based on the analysis results, it can be concluded that the Indonesian national identity scale has fulfilled good psychometric properties. It can be proven from evidence validity based on content, confirmatory factor analysis (CFA), and reliability analysis.

Outcome of the 3 Manifesto Development Workshops held by the ReMO COST Action between 20th and 26th April 2021

These documents are the result of a series of three online workshops held between 20th and 26th April 2021 by the Researcher Mental Health (ReMO) COST Action. The 2-hour long workshops focussed on engaging the ReMO community through developing recommendations for the <a href="https://zenodo.org/record/5559806">Researcher Mental Health and Well-being Manifesto</a> based on the specific impact priorities of each of ReMO's three Working Groups: <ul> <li> Working Group 1: System level - the ERA working environment </li> <li> Working Group 2: Institutional level - Wellbeing Practices in Research Institutions </li> <li> Working Group 3: Local actors - Promoting researcher well-being on a practical level  </li> </ul> These workshops were based on the outcomes of a previous process to perform <a href="https://zenodo.org/record/5643588">SWOT analyses</a> and <a href="https://zenodo.org/record/5643362">Impact analyses</a>.The following procedure was executed: <ul> <li> First, the working group chairs introduced the focus of each working group. </li> <li> Participants were randomly assigned to small parallel discussion groups. In four discussion rounds, participants identified actions to prioritise within the Manifesto and the agenda of the Working Group over project lifetime and populated the matrix of the padlet.  </li> <li> Subsequently, through a plenary discussion the ideas recorded in the matrix were discussed, duplications and similar items were merged.  </li> <li> As a result, the three Manifesto matrices for the three working groups were finalized and synthesized to a project level Manifesto matrix. </li> </ul> The process aimed to distill a number of key themes and actions, which are critical for developing a model of doctoral education and more general research culture embracing researcher mental health as a key priority. This process led to the publication of the <a href="https://zenodo.org/record/5559806">Researcher Mental Health and Well-being Manifesto</a>. The audience’s responses were anonymous, and they were recorded in a padlet, whose contents are available here.

opencc-by-4.0Jul 2021View details →

Code and Data for "Routescore: Punching the Ticket to More Efficient Materials Development"

Code and dataset for the manuscript "Routescore: Punching the Ticket to More Efficient Materials Development" by Seifrid, et al.

opencc-by-2.0Nov 2021View details →

A Promising Concept for the Development of Means for the Prevention of Radiation Pathologies

The problem of developing radioprotective means, capable of mitigating the effects of radiation exposure on the body, is associated not only with the danger of terrorist, military incidents or emergencies at nuclear facilities. An important area for the use of radioprotectors is space exploration, in particular, the need for crew members, protected only by a spacesuit, to enter open space. Furthermore, the solution to the problem of radiotherapy complications in oncology can also be the use of selective radioprotectors able to protect healthy tissues without reducing the effectiveness of tumor radiotherapy. An example of such approach is the use of amifostine in radiotherapy of a number of head-neck tumors. It is important to understand that the developed means should be well tolerated not only by healthy volunteers, but also by people of different ages, physical conditions, including the elderly and debilitated cancer patients. In particular, the adverse effects of amifostine in its effective radioprotective doses lead to a significant limitation of its clinical use. The solution to the problem of radioprotector safety can be the development of combinations containing several radiomodifying substances in small doses. Such compositions are capable of providing a synergistic radioprotective effect and good patient tolerance. Compounds capable of selectively inhibiting endothelial and inducible nitric oxide synthase (NOS) could be the base of such combinations. We have shown that NOS-inhibitors, in particular, N,S-substituted isothioureas, are highly effective in relatively safe doses. For example, the optimal radioprotective dose of one of them, T1023, with dose modifying factor (DMF) of 1.6 - 1.8, is 1/5-1/4 LD10. It has been shown that T1023 and its derivatives are highly effective both for parenteral and oral administration. These compounds provide pronounced prophylaxis of bone marrow and intestinal forms of acute radiation syndrome. Moreover, they are capable to effectively, with a DMF of 1.45, provide the prophylaxis of early and late complications in mouse and rat models of single and fractionated radiotherapy of solid tumors. It is important that the use of these compounds does not reduce the effectiveness of radiotherapy. The radioprotective effect of these compounds is realized by a specific molecular mechanism - by suppressing the endothelium-dependent eNOS/sGC/cGMP pathway of vascular relaxation. The mechanism of radioprotective activity of NOS inhibitors brings them with vasoactive radioprotectors - α1-adrenoreceptor agonists and 5-HT2 serotonin receptors. Therefore, their combined use is accompanied by a synergistic radioprotective effect. This opens up prospects for the creation of highly effective and safe radioprotector combinations.

opencc-by-2.0Nov 2021View details →

Impact of New Developments in the Commissioning of Operational Radiation Protección in Compact Proton Therapy Centers (CPTC)

Proton therapy is in continuous ever evolving to improve its performance. Some prominent current trends involve cutting-edge delivery methods or building compact proton centers. New developments have a direct impact in radiation protection of proton facilities and actions should be developed continuously with the aim that new centers meet all the requirements. The study of radiological protection in multi-room centers has been widely studied elsewhere, however, compact centers have specific features that pose a challenge in radiation protection, and the present work suggest different contributions to the body of knowledge in these compact facilities. Compact Proton Therapy Centers (CPTC) act out latest advances in particles: Usually have one single room, small footprint and a standard configuration, higher radiation density (Sv/m2), using the most advanced equipment and machinery to reduce their size, the delivery mode of protons is Pencil Beam Scanning (PBS), and there is a mix of professional exposed workers (clinical and technical staff) in these centers. The present work is framed into the project Contributions to operational radiation protection and neutron dosimetry in compact proton therapy centers (CPTC), which is focused on assessing the impact of these innovations on the operational radiation protection and commissioning of the compact facilities. Thus, several tasks have been carried out over the last three years, as checking and evaluation of shielding, comparing ambient dose equivalent of several CPTC, analyzing activation with different types of concrete, and activation in machinery, air and water of the facility, characterizing wide range rem-meters and neutron area monitors to measure neutron fields, studying new proton delivery techniques and their neutron fields, or assessing personal dosemeters, among others. The aim of the work is to present outcomes achieved in the aforementioned areas. As a result, a commissioning process of the operational radiation protection in compact centers will be suggested, lined up with the requirements by the Spanish Regulatory Body. Considering topics as new methods of application of dose in development (proton arc therapy, flash-therapy with protons), new materials for barriers and shielding or recent radiation monitoring equipment, future works must be carried out to study their impact on operational radiation protection and recommendations such as ICRP Publication 127, Radiological Protection in Ion Beam Radiotherapy, should be updated periodically taking into account the new methods and technologies developed.

opencc-by-2.0Nov 2021View details →

Developing the System of Radiological Protection to Enhance Its Contribution to the UN Sustainable Development Goals

The system of radiological protection has evolved since the publication of the ICRP’s first set of recommendations in 1959. It has enabled the beneficial uses of radiation and radioactive substances while protecting humans from their harmful tissue reactions and carcinogenic (and other stochastic) effects. The system has arguably been world leading in the protection of humans from carcinogens. Since the publication of the most recent ICRP recommendations in 2007 the pace of change in global socio-economic challenges and environmental degradation has accelerated. We face climate, biodiversity and pollution emergencies as well as global health crises such as Covid-19 and increases in non-communicable diseases such as cancer. In addressing the global issues we face it is therefore more important than ever to take an integrated approach to balancing social, environmental and economic risks and impacts. In the context of radiological protection it is vital that our efforts to reduce or control radiation risks consider the wider consequences of those efforts if we are to avoid causing more harm than good. The United Nations Sustainable Development Goals (SDGs) are an ideal framework for facilitating a balanced approach to socio-economic development and environmental protection and enhancement.  They recognise that ending poverty and other deprivations must go hand-in-hand with improving health and education, reducing inequality, and spurring economic growth – all while tackling climate change and preserving our environment. The ICRP system of radiological protection is based on three fundamental principles: justification, optimisation and the limitation of radiation exposure. The principle of justification requires that any decision that changes the amount of radiation exposure should do more good than harm. Optimisation requires that radiation exposure should be kept as low as reasonably achievable, taking into account economic and societal factors. Optimisation is not the minimisation of radiation exposure rather the maximising of the net benefit relative to the radiation exposure. This paper explores how the system of radiological protection contributes to the delivery of sustainable development and considers how the SDGs might be taken into account in its further development and application to ensure that the system is fit for the 21st century.

opencc-by-4.0Sep 2021View details →

How accurate are developers' emotions inferred from social media?

Companion DATA of the paper "How accurate are developers' emotions inferred from social media?" submitted to the Journal of Systems and Software, 2021. The folders contain: /analysis     analyzed_tweets_by_psychologists.csv: file containing the manual analysis done by psychologists     analyzed_tweets_by_participants.csv: file containing the manual analysis done by participants     analyzed_tweets_by_psychologists_solved_divergencies.csv: file containing the manual analysis done by psychologists over 51 divergent tweets' classifications /dataset     alldata.json: contains the dataset used in the paper /notebooks     General - Charts.ipynb: notebook file containing all charts produced in the study, including those in the paper     Statistics - Lexicons and Ensembles.ipynb: notebook file with the statistics for the five lexicons and ensembles used in the study     Statistics - Linear Regression.ipynb: notebook file with the multiple linear regression results     Statistics - Psychologists versus Participants.ipynb: notebook file with the statistics between the psychologists and participants manual analysis     Statistics - Working x Non-working.ipynb: notebook file containing the statistical analysis for the tweets posted during work period and those posted outside of working period /surveys     Demographic_Survey.pdf: survey inviting participants to enroll in the study. We collect demographic data and participants' authorization to access their public Tweet posts     Demographic_Survey_answers.xlsx: participants' demographic survey answers     ibf_pt_br.doc: the Portuguese version of the Big Five Inventory (BFI) instrument to infer participants' Big Five polarity traits     ibf_answers.xlsx: participantes' and psychologists' answers for BFI ------------------------------------------------------------ We have removed from dataset any sensible data to protect participants' privacy and anonymity. We have removed from demographic survey answers any sensible data to protect participants' privacy and anonymity.

Data for Development of LOS Analysis Procedures and Performance Measurement Systems for Parking (UTEP Year 4 Project)

These Excel files consists of the data in the tables and figures in the final report. They appear in Chapters 3 to 6 in the final report. Each file is for one chapter. Each table or figure is listed as an Excel worksheet. The name of the worksheet is the figure or table number in the final report.

Thermal requirements for egg development of two endemic Wiseana pest species (Lepidoptera: Hepialidae) of economic importance

Raw and analyzed data for our paper title "Thermal requirements for egg development of two endemic Wiseana pest species (Lepidoptera: Hepialidae) of economic importance".

Data Supplement for 'Curled Wake Development of a Yawed Wind Turbine at Turbulent and Sheared Inflow' - Wind Energy Science Journal

Data Supplement for 'Curled Wake Development of a Yawed Wind Turbine at Turbulent and Sheared Inflow' - Wind Energy Science Journal This database contains the measurement using a model wind turbine with 0.6m diameter(D) in a wind tunnel. A short-range Lidar WindScanner facilitated mapping the wake with a high spatial and temporal resolution in vertical, cross-stream planes at different downstream locations and in a horizontal plane at hub height. The measurement campaign was conducted in the large wind tunnel at ForWind-University of Oldenburg. The wind tunnel has a test section cross-section with the dimensions of 3m x3m. For this study three movable test section elements of 6m length were attached for a total enclosed length of 18m. The roof of the test section was adjusted to compensate for boundary layer growth  to achieve a zero pressure gradient for the target wind speed of the experiments, nominally 7.5m/s, with an empty tunnel with no grid or turbine installed. The three-bladed MoWiTO 0.6 wind turbine model(Schottler et al.(2016)), with a hub height (h) of 0.77m and a diameter of 0.58m was placed at a distance of 2.4D downstream of the test section inlet, where the distance was measured to the centre of the rotor. In addition, the distance between the rotor center and the tower center is 110mm. The flow blockage, based on rotor swept area and tower flow-facing area, was 2.7%. The wind turbine controller is based on the torque of the generator (Petrovi ́c et al. (2018)) leading to a tip speed ratio of 5.7 at the operational point during non-misaligned cases with no grid. More information can be found in the paper. The folder contains 12 unique .mat files each containing a matlab structure. The matlab structure conatins the vertical and horizontal scan for each inflow and operational condition: With the upstream turbine installed:  - Yaw0_Uniform_NoGrid     - 1D, 2D, 3D, 5D, 13D, 16D, Horizontal  - Yaw30_Uniform_NoGrid     - 1D, 2D, 3D, 5D, 13D, 16D, Horizontal  - Yawneg30_Uniform_NoGrid     - 1D, 2D, 3D, 5D, 13D, 16D, Horizontal  - Yaw0_Uniform_PassiveGrid     - 1D, 2D, 3D, 5D, 7D, 10D, Horizontal  - Yaw30_Uniform_PassiveGrid     - 1D, 2D, 3D, 5D, 7D, 10D, Horizontal  - Yawneg30_Uniform_PassiveGrid     - 1D, 2D, 3D, 5D, 7D, 10D, Horizontal      - Yaw0_BoundaryLayer_PassiveGrid     - 1D, 2D, 3D, 5D, 7D, 10D, Horizontal  - Yaw30_BoundaryLayer_PassiveGrid     - 1D, 2D, 3D, 5D, 7D, 10D, Horizontal  - Yawneg30_BoundaryLayer_PassiveGrid     - 1D, 2D, 3D, 5D, 7D, 10D, Horizontal     Without the upstream turbine installed:  - NoTurbine_Uniform_NoGrid     - 1D, 2D, 3D, 5D, 13D, 16D  - NoTurbine_Uniform_PassiveGrid     - 0D, 1D, 2D, 3D, 5D, 7D, 10D  - NoTurbine_BoundaryLayer_PassiveGrid     - 0D, 1D, 2D, 3D, 5D, 7D, 10D     Within each substructure the following parameters are provided:  - v_los [m/s] ----------> Line of sight velocity  - sigma [m/s] ----------> Spectrum width  - x_Global_frame [m] ---> x-coordinate referenced at the lower grid midpoint  - y_Global_frame [m] ---> y-coordinate referenced at the lower grid midpoint  - z_Global_frame [m] ---> z-coordinate referenced at the lower grid midpoint  - xx [m] ---------------> Grid of the x-coordinate referenced at the lower grid midpoint  - yy [m] ---------------> Grid of the y-coordinate referenced at the lower grid midpoint  - zz [m] ---------------> Grid of the z-coordinate referenced at the lower grid midpoint  - uu [m/s] -------------> Horizontal wind speed at the position of the gridded coordinates, these data have been interpolated onto the grid   When using this database please reference to the journal paper. All data has been included without warranty, express or implied. For further questions, please contact the corresponding author.