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opennotspecifiedDec 2018View details →

Fig. 1 in Nocardioides silvaticus sp. nov., isolated from forest soil

Fig. 1. An NJ tree based on 16S rRNA gene sequences showing the phylogenetic relationships of strain S-34T and other related strains. Terrabacter tumescens DSM 20308T was used as an outgroup member. Filled circles indicate that the corresponding nodes were also recovered in trees reconstructed with the MP tree and ML tree. Numbers at nodes indicate levels of bootstrap support based on 1000 resampled datasets. Values below 50 % are not shown. Bar, 0.01 substitutions per nucleotide position.

Fig. 1 in Melaminivora jejuensis sp. nov., isolated from Swinery waste

Fig. 1. Neighbour-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the position of strain KBB12T within the family Comamonadaceae. Bootstrap values (>70 %) based on 1000 replications are shown at the nodes. Burkholderia cepacia ATCC 25416T was used as an out-group. Black circles indicate that the corresponding branches were also recovered in trees obtained by the maximum parsimony and the maximum likelihood methods. Bar, 0.01 substitutions per nucleotide position.

Fig. 1 in Pontibacter brevis sp. nov., isolated from rhizosphere soil of Tamarix ramosissima

Fig. 1. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences of strain XAAS-2T and close relatives. Bootstrap values (1000 replications) above 50 % are showed at nodes. Asterisks indicate that the corresponding nodes were also recovered in the maximum-likelihood and maximum-evolution trees. Bar, 0.01 substitutions per nucleotide position.

Fig. 1 in Deinococcus hibisci sp. nov., isolated from rhizosphere of Hibiscus syriacus L. (mugunghwa flower)

Fig. 1. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showing the relationships of the stain Deinococcus hibisci THG-AG1.5T with the related species. Filled circles at nodes indicate branches that were also recovered by using the maximumparsimony algorithm. Bootstrap values (expressed as percentage of 1000 replications) over 70 % are shown at the branching points. Bar, 0.01 substitutions per nucleotide position.

Fig. 1 in Paenibacillus shunpengii sp. nov., isolated from farmland soil

Fig. 1. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showing relationships between strain YYJ7-1T and closely related species. The tree was rooted using the sequence of Cohnella xylanilytica MX15-2T as the outgroup. Numbers at nodes represent bootstrap values (based on 1000 replicates). Filled circles indicate that the corresponding branches were also recovered using the maximum-likelihood and minimum-evolution algorithms. Bar, 0.01 substitutions per nucleotide position. GenBank accession numbers are shown in parentheses.

Fig. 1 in Flavobacterium eburneum sp. nov., isolated from reclaimed saline land soil

Fig. 1. Phylogenetic tree reconstructed using the neighbour-joining method based on 16S rRNA gene sequences, and showings the position of strain SA31T and its closely related species. Escherichia coli ATCC 11775T (GenBank accession no. JMST01000030) was used as an outgroup. Evolutionary distances were computed using Kimura's 2-parameter method [21] and are given in units of number of base substitutions per site. Bootstrap values (expressed as percentages of 1000 iterations)>50 % are shown at branch points. Filled circles indicate branches found in phylogenetic consensus trees generated with the maximum-likelihood method. Bar, 0.02 nucleotide substitutions per nucleotide position.

Fig. 2 in Streptomyces krungchingensis sp. nov., isolated from soil

Fig. 2. Phylogenetic relationships based on an NJ analysis of 16S rRNA gene sequences of strain KC-035T and closely related Streptomyces species. Kitasatospora setae JCM 3304T was used as the outgroup. Symbols indicate that branches were also recovered in the ML (*) and MP (#) trees. The numbers at branch nodes indicate bootstrap percentages derived from 1000 replications (only values>50 % are shown). Bar, 0.005 substitutions per nucleotide position.

Fig. 1 in Streptomyces krungchingensis sp. nov., isolated from soil

Fig. 1. Scanning electron micrograph showing the flexuous spore chains and smooth spore surface of strain KC-035T after growing on ISP2 medium at 30 ǪC for 14 days. Bar, 1 µm.

Fig. 1 in Bacillus maritimus sp. nov., a novel member of the genus Bacillus isolated from marine sediment

Fig. 1. Neighbour-joining tree based on 16S rRNA gene sequences showing the relationships between strain KS16-9T and related type strains in the genus Bacillus. Paenibacillus aestuarii CJ25T (EU570250) was used as an outgroup. Bootstrap values (>70 %) based on 100 re-sampled datasets are shown at branch nodes. Branches recovered with the maximum-parsimony and maximum-likelihood algorithms are indicated by filled circles. Bar, 0.01 substitutions per nucleotide position.

Fig. 2 in Paenibacillus shunpengii sp. nov., isolated from farmland soil

Fig. 2. Neighbour-joining phylogenetic tree based on the rpoB gene sequences showing relationships between strain YYJ7-1T and closely related species. The tree was rooted using the sequence of Brevibacillus brevis NBRC 100599 as the outgroup. Numbers at nodes represent bootstrap values (based on 1000 replicates). Bar, 0.05 substitutions per nucleotide position. GenBank accession numbers are shown in parentheses.

opencc-by-4.0Feb 2022View details →

Laparoscopic management of isolated nodal recurrence in gynecological malignancies is safe and feasible even for large metastatic nodes until 8 cm: a case series

<p>Supplementary materials. Video S1: Secondary cytoreductive surgery in a case of ILNR from high grade serous ovarian cancer; Video S2: Secondary cytoreductive surgery in a case of ILNR form uterine sarcoma.Video S1: Secondary cytoreductive surgery in a case of ILNR from high grade serous ovarian cancer; Video S2: Secondary cytoreductive surgery in a case of ILNR form uterine sarcoma.</p>

opennotspecifiedDec 2020View details →

Fig. 1 in Chryseoglobus indicus sp. nov., isolated from deep sea water

Fig. 1. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showing the relationship between strain CTD02-10-2T and related taxa. The tree was reconstructed in MEGA 7.0 using the Kimura two-parameter model. Closed circles indicate branches that were resolved using all three tree-making methods (maximum-likelihood, maximum-parsimony and neighbour-joining). Bootstrap values (expressed as percentages of 1000 replications) over 50% are shown at branching nodes. Bar, 0.01 substitutions per nucleotide position.

opennotspecifiedJul 2020View details →

Fig. 2 in Fundicoccus ignavus gen. nov., sp. nov., a novel genus of the family Aerococcaceae isolated from bulk tank milk

Fig. 2. Up-to-date bacterial core gene tree (UBCG) based on a multigene alignment with 92 housekeeping genes. Genome data of type strains of the type species from the family Aerococcaceae available on the EzBioCloud database were used. The three isolates of this study are marked in bold. The tree was calculated based on the Tamura–Nei model using MEGA X software. Two hundred repetitions were performed to reveal statistic support which is shown at branch nodes (bootstrap values>50 %). Lactococcus lactis subsp. lactis was used as an outgroup. Bar, 0.1 substitution per nucleotide position.

opennotspecifiedApr 2019View details →

Fig. 2 in Lactobacillus suantsaii sp. nov., isolated from suan-tsai, a traditional Taiwanese fermented mustard green

Fig. 2. Phylogenetic tree based on the concatenated housekeeping gene sequences (pheS and rpoA) showing the relationship of Lactobacillus suantsaii sp. nov. L88T with strains of closely related species. The tree was reconstructed by the neighbour-joining method on the basis of a comparison of 1138 bp, and Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293T was used as an outgroup. Bootstrap values based on 1000 replicates are shown at branch nodes for neighbour-joining, maximum-likelihood and minimum-evolution methods, respectively. Bar, 5 % sequence divergence.

opennotspecifiedAug 2021View details →

Fig. 2 in Sphingobacterium prati sp. nov., isolated from agricultural soil and involved in lignocellulose deconstruction

Fig. 2. Maximim-likelihood phylogenetic tree based on the sequences of the concatenated rpoB–cpn60–16S rRNA genes showing the relationship of strain arapr2T with closely related Sphingobacterium species. Branches corresponding to partitions reproduced in less than 50% bootstrap replicates were removed.

opennotspecifiedFeb 2022View details →

Fig. 1. 16S in Pseudochrobactrum algeriensis sp. nov., isolated from lymph nodes of Algerian cattle

Fig. 1. 16S rRNA gene minimum-likelihood phylogeny of a selected subset of Brucellaceae type strains. Bootstrap support over 1000 replications are indicated at each branching point. The tree is rooted according to a previously published Brucellaceae 16S rRNA topology conducted with several Rhizobiales outgroups [4].

opennotspecifiedJul 2020View details →

Fig. 1 in Fundicoccus ignavus gen. nov., sp. nov., a novel genus of the family Aerococcaceae isolated from bulk tank milk

Fig. 1. Maximum-likelihood tree based on the almost-complete 16S rRNA gene sequences of strains WS4937T, WS4759, WS5303 and type strains of all species of the family Aerococcaceae. Type strains of the type species are marked in bold. Sequences of the strains were retrieved from EzBioCloud. The tree was calculated using the Tamura–Nei model. Bootstrap values (>50%) based on 500 repetitions are shown at branch nodes. Analyses were performed using MEGA X. Lactococcus lactis subsp. lactis was used as an outgroup. Bar, 0.01 substitutions per nucleotide position.

opennotspecifiedAug 2021View details →

Fig. 2 in RUMiNOCOCCUS BOViS sp. nov., a novel species of amylolytic RUMiNOCOCCUS isolated from the rumen of a dairy cow

Fig. 2. JE7A12T phylogenic tree by PhyloPhlan dendrogram; JE7A12 T and type strains of species of the genus Ruminococcus as well as type strains of other close phylogenetic neighbours. JE7A12T is indicated in green type, type strains of members of Ruminococcus group 1 are indicated in blue type. Branch length based on relative concatenated amino acid sequence similarity is appended to each branch. NCBI GenBank accession numbers are appended to each species label.

opennotspecifiedFeb 2022View details →

Fig. 2 in Pseudochrobactrum algeriensis sp. nov., isolated from lymph nodes of Algerian cattle

Fig. 2. Whole-genome maximum-likelihood phylogeny of a selected subset of Brucellaceae type strain genomes, based on the alignment of 854 core proteins. Bootstrap support over 100 replications are indicated at each branching point. The Pseudochrobactrum clade is boxed in pink. Pairwise gANI values are given as a heatmap, with values below the species threshold of 96.5 coloured as a white-to-blue gradient, and values above the threshold coloured as a blue-to-purple gradient.