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Comprehensive Evaluation of End-Point Free Energy Techniques in Carboxylated-Pillar[6]arene Host-guest Binding: I. Standard Procedure
<p>All the initial structures as well as the Autodock docked ligand poses used and the computational results.</p>
Effects of spatial distance and woody plant cover on beta diversity point to dispersal limitation as a driver of community assembly during post-fire succession in a Mediterranean shrubland
<p><span>Beta diversity, and its components of turnover and nestedness, reflect the processes governing community assembly, such as dispersal limitation or biotic interactions, but it is unclear how they operate at the local scale and how their role changes along post-fire succession. Here, we analyzed the patterns of beta diversity and its components in a herbaceous plant community after fire, and in relation to dispersal ability, in Central Spain. We calculated multiple site beta diversity (β<sub>SOR</sub>) and its components of turnover (βSIM) and nestedness (β<sub>SNE</sub>) of all herbaceous plants, or grouped by dispersal syndrome (autochory, anemochory, zoochory), during the first three years after wildfire. We evaluated the relationship between pairwise beta diversity (β<sub>sor</sub>), and its components (β<sub>sim</sub>, β<sub>sne</sub>), and spatial distance or differences in woody plant cover, a proxy of biotic interactions. We found high multiple-site beta diversity dominated by the turnover component. Community dissimilarity increased with spatial distance, driven mostly by the turnover component. Species with less dispersal ability (i. e. autochory) showed a stronger spatial pattern of dissimilarity. Biotic interactions with woody plants contributed less to community dissimilarity, which tended to occur through the nestedness component. These results suggest that dispersal limitation prevails over biotic interactions with woody plants as a driver of local community assembly, even for species with high dispersal ability. These results contribute to our understanding of post-fire community assembly and vegetation dynamics.</span></p>
FIGURE. Distribution of Dicorynia. Physical map of the Amazonian region with all analyzed specimens of Dicorynia. A large amount of point overlays leading to reduced number of visible points is due to the large percentage of materials being old collections that rely only on the name of the municipality or similar. Source: NASA with modifications. Note that almost all specimens are contained in areas with less than 200 m high and the high elevations of the Guiana shield may represent a form of isolation between the two species. in A Taxonomic Revision of the Amazonian Genus Dicorynia (Fabaceae: Dialioideae)
FIGURE. Distribution of Dicorynia. Physical map of the Amazonian region with all analyzed specimens of Dicorynia. A large amount of point overlays leading to reduced number of visible points is due to the large percentage of materials being old collections that rely only on the name of the municipality or similar. Source: NASA with modifications. Note that almost all specimens are contained in areas with less than 200 m high and the high elevations of the Guiana shield may represent a form of isolation between the two species.
Graph-based Leaf–Wood Separation Method for Individual Trees Using Terrestrial Lidar Point Clouds: Labeled validation data
<p>Set of 10 manually labeled point clouds used in the performance assessment of "Graph-based Leaf–Wood Separation Method for Individual Trees Using Terrestrial Lidar Point Clouds". This dataset is a collection of single trees scanned from different regions covering tropical, temperate, and boreal species—with heights ranging from 5.4 to 43.7 m, using the Riegl VZ-400 and Leica ScanStation C10 terrestrial laser scanner. These data have been preprocessed. For the original data, see https://doi.org/10.5061/dryad.10hq7;<br> https://doi.org/10.5061/dryad.np5hqbzp6;<br> https://doi.org/10.1594/PANGAEA.942856.</p>
Bangassou near Lake Maboké (near Mongoumba), Central African Republic. Based on proodont incisors, considered to be part of the M. sorella species group, from which it can be distinguished based on its reddish-brown dorsal coloration and blackish, slightly pointed ears. Monotypic. Distribution. Known from just three locali-ties in S Central African Republic. in Muridae
Bangassou near Lake Maboké (near Mongoumba), Central African Republic. Based on proodont incisors, considered to be part of the M. sorella species group, from which it can be distinguished based on its reddish-brown dorsal coloration and blackish, slightly pointed ears. Monotypic. Distribution. Known from just three locali-ties in S Central African Republic.
The current, electromagnetic field and optical data of a rocket-triggered lightning with two grounding points
<p> The current, electromagnetic field and optical data of a rocket-triggered lightning with two grounding points are in the Data for Dataset.zip . These files can be opened by Origin 2021 . The data supports the aforementioned manuscript and can be used freely for scientific purposes with appropriate citation.</p>
FIG. 9. Bayesian tree inferred using D2-D3 28S in Analyses of morphological and molecular characteristics of Telotylenchinae from Iran point at the validity of the genera Bitylenchus and Sauertylenchus
FIG. 9. Bayesian tree inferred using D2-D3 28S rDNA sequences. Posterior probabilities (pp) exceeding 0.65 are given on appropriate clades, bifurcations with pp above 0.95 are considered to be well-supported. Nematode species and GenBank numbers are listed for each taxon. In bold: newly generated D2-D3 28S rDNA sequences. With regard to Telotylenchinae Clades (indicated in Roman figures) we adhered to Handoo et al. (2014)
FIG. 8. Bayesian tree inferred from 18S in Analyses of morphological and molecular characteristics of Telotylenchinae from Iran point at the validity of the genera Bitylenchus and Sauertylenchus
FIG. 8. Bayesian tree inferred from 18S rDNA sequences. Posterior probabilities (pp) exceeding 0.65 are given on appropriate clades, bifurcations with pp above 0.95 are considered to be well-supported. Nematode species and GenBank numbers are listed for each taxon. In bold: newly generated 18S rDNA sequences. With regard to Telotylenchinae Clades (indicated in Roman figures) we adhered to Handoo et al. (2014).
FIG. 7 in Analyses of morphological and molecular characteristics of Telotylenchinae from Iran point at the validity of the genera Bitylenchus and Sauertylenchus
FIG. 7. Photomicrographs of Trophorus ussuriensis. Females (A–C & F–L & N–P) and males (D, M & Q). A: Pharynx; B–D: Head and stylet. F,E: Terminal bulb; G: Spermatheca; H: Lateral field; I–J: Vulva and post-vulval uterine sac; K–M: Entire body; N–Q: Tail. (Scale bars: A = 20 μm; B–J & N–Q = 10 μm; K & M: = 100 μm); [a = anus; c = cardia; p = post vulval uterine sac; ph = phasmid; s = spermatheca].
FIG. 4 in Analyses of morphological and molecular characteristics of Telotylenchinae from Iran point at the validity of the genera Bitylenchus and Sauertylenchus
FIG. 4. Photomicrographs of Sauertylenchus maximus. Females (A–O). A: Pharynx; B–E: Head and stylet; F: Terminal bulb; G &H: Lateral field; I: Vulva; J: Entire body; K–O: Tail. (Scale bars: A = 20 μm; J = 100 μm; B–I & K–O = 10 μm); [a = anus].
FIG. 3 in Analyses of morphological and molecular characteristics of Telotylenchinae from Iran point at the validity of the genera Bitylenchus and Sauertylenchus
FIG. 3. Photomicrographs of Bitylenchus serranus. Females (A–D & F–J & L–O) and males (E, K & P). A: Pharynx; B–E: Head and stylet; F: Terminal bulb; G: Lateral field; H: Spermatheca; I: Vulva and fasciculi; J & K: Entire body; L–P: Tail. (Scale bars: A = 20 μm; J–K = 100 μm; B–I &L–P = 10 μm); [ph = phasmid].
FIG. 2 in Analyses of morphological and molecular characteristics of Telotylenchinae from Iran point at the validity of the genera Bitylenchus and Sauertylenchus
FIG. 2. Photomicrographs of Bitylenchus parvus. Females (A–N). A: Pharynx; B–D: Head and stylet; E: Terminal bulb; F & G: Lateral field; H: Vulva; I: Spermatheca; J: Entire body; K–N: Tail. (Scale bars: A = 20 μm; J: = 100 μm; B–I & K–N = 10 μm); [ph = phasmid; s = spermatheca].
FIG. 5 in Analyses of morphological and molecular characteristics of Telotylenchinae from Iran point at the validity of the genera Bitylenchus and Sauertylenchus
FIG. 5. Photomicrographs of Tylenchorhynchus clarus. Females (A-–I). A: Pharynx; B &C: Head and stylet; D: Lateral field; E: Vulva and spermatheca; F: Entire body; G-–I: Tail. (Scale bars: A = 20 μm; F-–G = 100 μm; B-–E & H-–J = 10 μm); [a = anus].
FIG. 6 in Analyses of morphological and molecular characteristics of Telotylenchinae from Iran point at the validity of the genera Bitylenchus and Sauertylenchus
FIG. 6. Photomicrographs of Tylenchorhynchus microconus. Females (A–M). A: Pharynx; B–D: Head and stylet; E: Terminal bulb; F: Lateral field; G: Vulva; H: Spermatheca; I: Entire body; J–M: Tail. (Scale bars: A = 20 μm; I = 100 μm; B–H & J–M = 10 μm); [a = anus; ph = phasmid; s = spermatheca].
FIG 1 in Analyses of morphological and molecular characteristics of Telotylenchinae from Iran point at the validity of the genera Bitylenchus and Sauertylenchus
FIG 1. Photomicrographs of Bitylenchus dubius. Females (A–C, E–I & K–M) and males (D, J & N). A: Pharynx; B–D: Head and stylet. E: Terminal bulb; F: Lateral field; G: Vulva and fasciculi; H: Spermatheca; I & J: Entire body; K–N: Tail. (Scale bars: A = 20 μm; I–J =100 μm; B–H, K–N = 10 μm); [a = anus; ph = phasmid; s = spermatheca].
Source Data for Xiao et al., Topological Superfluid Defects with Discrete Point Group Symmetries , Nature Communications 13, 4635 (2022).
<p>Source data for Figures 2-5. Source data for Supplementary Figures S2-S5 available upon request to David Hall (dshall@amherst.edu).</p>
FIGURE. FISH karyotype pattern diagram of 8 diploid hyacinth cultivars a.'Gypsy Queen'; b.'Purple sensation' c.'Pink pearl' d.'Gypsy princess' e.'Blue pearl' f.'Odysseus' g.'Yellowstone' h.'Red pearl' Red point: 45S rDNA loci; Green point: 45S rDNA loci; Yellow point: ITR sites in Physical mapping of 45S and 5S rDNA and telomeric repeat loci in eight diploid hyacinth cultivars
FIGURE. FISH karyotype pattern diagram of 8 diploid hyacinth cultivars a.'Gypsy Queen'; b.'Purple sensation' c.'Pink pearl' d.'Gypsy princess' e.'Blue pearl' f.'Odysseus' g.'Yellowstone' h.'Red pearl' Red point: 45S rDNA loci; Green point: 45S rDNA loci; Yellow point: ITR sites
Dataset of topographic points measured at La Palma new beaches
<p>Present dataset includes all the topographic points measured al 14 beaches related to the new lava-deltas generated after the Cumbre Vieja eruption of 2021 in La Palma Island. This dataset is used in the paper "<strong>Morphosedimentary characteristics and formation mechanisms of new beaches generated after the Cumbre Vieja eruption of 2021 (La Palma, Spain)</strong>", submitted to Marine Geology</p>
Environmental, grain size, and shoreline data from Point Hope, Alaska, USA
<p>Numerous datasets and a numerical modeling tool are included for characterizing oceanographic conditions, geologic properties, and morphologic changes at Point Hope, Alaska, USA. Newly digitized shorelines, provided as a single shapefile, of the instantaneous water line are provided from the period of 2004 to 2021 for characterizing recent and historical beach changes along the northern shore of the Point Hope spit. Still water level data collected from within Marryat Inlet from summer and fall 2021 are included for characterizing astronomical tides and other non-tidal residuals that contribute to these shoreline change patterns. This time series data is given as an excel file. Text files of wave time series from an offshore Spotter wave buoy from summer and fall 2021 is also provided. Grain size information from two sites are provided for additional site context, also provided as an excel spreadsheet. These various inputs are incorporated into a numerical tool, based on the Palmsten and Holman (2012), dune erosion model. An example script is provided to set up, run, and visualize model scenarios. These analytical model scripts are coded in Matlab. These datasets and modeling outputs are presented in a paper "Assessing drivers of coastal tundra retreat along Point Hope, Alaska" submitted to the Journal of Geophysical Research: Earth Surface in June 2022.</p>
FIGURE 1 in Keratose sponge MuseOMICS: setting reference points in dictyoceratid demosponge phylogeny
FIGURE 1. Maximum Likelihood phylogram of concatenated ITS and 28S sequences from type material of type species for dictyoceratid genera. Numbers at branches are bootstrap values> 50%. Taxon names in bold depict sequences yielded in the course of the target capturing approach as described here. Species names are followed by museum voucher number and type status. The tree is rooted with Candidaspongia flabellata Bergquist, Sorokin & Karuso, a dysideid Dictyoceratida. Scale bar represents substitutions / site.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.