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Linked collectors and determiners for: Estonian University of Life Sciences Institute of Agricultural and Environmental Sciences Vascular Plant Herbarium.
Natural history specimen data linked to collectors and determiners held within, "Estonian University of Life Sciences Institute of Agricultural and Environmental Sciences Vascular Plant Herbarium". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/6b5e4c2d-127f-492e-bf1c-2026d515e0de">https://bionomia.net/dataset/6b5e4c2d-127f-492e-bf1c-2026d515e0de</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/6b5e4c2d-127f-492e-bf1c-2026d515e0de">https://gbif.org/dataset/6b5e4c2d-127f-492e-bf1c-2026d515e0de</a>. Formatted as a Frictionless Data package.
Table 5 in Guide to the Vascular Flora of the Savannas and Flatwoods of Shaken Creek Preserve and Vicinity (Pender & Onslow Counties, North Carolina, U. S. A.)
<p>Table 5. Summary of vascular plant taxa collected or reported from savannas, flatwoods, or sandhills in Shaken Creek Preserve or the vicinity (i.e., in Sandy Run and/or within a 2-mile radius of Shaken Creek Preserve). The first number in each three-number series indicates the number of taxa collected or reported from Shaken Creek Preserve. The second number in each series indicates the number of additional taxa collected or reported from the vicinity of, but not in, Shaken Creek Preserve. The third number in each series, which appears in parentheses, is the sum of the preceding two numbers and indicates the total number of taxa collected or reported from either Shaken Creek Preserve or the vicinity. (The lone exotic taxon is Pinus elliottii Engelm. var. elliottii, which was planted by a timber company in a flatwoods in Shaken Creek Preserve prior to the site’s purchase by The Nature Conservancy.)</p><table><tbody><tr><th>Group</th><th>Families</th><th>Genera</th><th>Species and Subspecies/Varieties</th></tr><tr><th>Native</th><th>Exotic</th><th>Total</th></tr></tbody><tbody><tr><td>Total</td><td>83, 7 (90)</td><td>204, 27 (231)</td><td>449, 102 (551)</td><td>1, 0 (1)</td><td>450, 102 (552)</td></tr></tbody></table>
FIGURE 2 in The non-indigenous stolidobranch ascidian Polyandrocarpa zorritensis in the Mediterranean: description, larval morphology and pattern of vascular budding
FIGURE 2 — Polyandrocarpa zorritensis. Living zooids.
Data from: Distinct association between APOE ε2 and Aβ in Alzheimer- and vascular-type cognitive impairment
<p><b>Objective:</b> To investigate the association between apolipoprotein E<i> </i>(<i>APOE</i>) genotype and amyloid-β (Aβ) burden, as measured by PET in patients with subcortical vascular cognitive impairment (SVCI) and those with Alzheimer's disease-related cognitive impairment (ADCI).</p> <p><b>Methods:</b> This was a cross-sectional study of 310 patients with SVCI and 999 with ADCI. To evaluate the effects of <i>APOE</i> genotype or diagnostic group on Aβ-positivity, we performed multivariate logistic regression analyses. Further distinctive underlying features of latent subgroups were examined by employing a latent class cluster analysis approach.</p> <p><b>Results: </b>In comparison with ε3 homozygotes, in the ADCI group, ε2 carriers showed a lower frequency of Aβ-positivity (odds ratio [OR] 0.43, 95% CI 0.23–0.79) while in the SVCI group, ε2 carriers showed a higher frequency of Aβ-positivity (OR 2.26, 95% CI 1.02–5.01). In particular, we observed an interaction effect of ε2 carrier status and diagnostic group on Aβ-positivity (OR 5.12, 95% CI 1.93–13.56), in that relative to ε3 homozygotes, there were more Aβ-positive ε2 carriers in the SVCI group than in the ADCI group. We also identified latent subgroups of Aβ-positive <i>APOE</i> ε2 carriers with SVCI and Aβ-positive <i>APOE</i> ε4 carriers with ADCI.</p> <p><b>Conclusions: </b>Our findings suggest that <i>APOE</i> ε2 shows distinctly associated with Aβ deposition in patients with SVCI and those with ADCI. Our findings further suggest that there is a distinctive subgroup of Aβ-positive <i>APOE</i> ε2 carriers with SVCI among patients with cognitive impairments.</p>
FIGURE 1 in Nomenclatural corrections in vascular plants, 1. Valid publication of Allium savranicum "Besser"
FIGURE 1. Lectotype specimen of Allium savranicum.
FIGURE 3 in Patterns of diversity and gaps in vascular (hemi-)epiphyte flora of Southwestern Amazonia
FIGURE 3. Collecting density of epiphytes by municipality in Acre.
Complexity character scores for fossil and extant vascular plant reproductive structures
<p>Morphological diversity and complexity are notable features of multicellular life, although whether they evolve gradually or in early bursts is unclear. Vascular plant reproductive structures, such as flowers, are familiar examples of complicated morphology, and here we analyze changes in complexity over time using a simple approach based on the number of part types. We find that reproductive complexity increased in two pulses separated by nearly 250 million years of stasis, including an initial Devonian rise with the radiation of vascular plants and a dramatic Late Cretaceous increase reflecting flowering plant diversification. These pulses are associated with innovations that increased functional diversity, suggesting that shifts in complexity are linked to changes in function, regardless of whether they occur early or late in the history of vascular plants.</p>
Figure 1. A, B in The oldest cinctan carpoid (stem-group Echinodermata), and the evolution of the water vascular system
Figure 1. A, B, the geographic and geological setting of the Iberian Chains (north-east Spain), showing the type locality (indicated by a star), and surrounding areas. Modified from Gozalo & Liñán (1988).
Supplementary material 1 from: {"en": "Kolter A, Gemeinholzer B (2021) Internal transcribed spacer primer evaluation for vascular plant metabarcoding. Metabarcoding and Metagenomics 5: e68155. https://doi.org/10.3897/mbmg.5.68155"}
Supplementary files
Figure 3 from: Desmet P, Brouilet L (2013) Database of Vascular Plants of Canada (VASCAN): a community contributed taxonomic checklist of all vascular plants of Canada, Saint Pierre and Miquelon, and Greenland. PhytoKeys 25: 55-67. https://doi.org/10.3897/phytokeys.25.3100
Figure 3 - The VASCAN Darwin Core Archive, structured following the GBIF GNA Profile. It is a compressed folder containing 4 text files with tab-seperated values and 2 xml files. Taxon and scientific name information is provided in taxon.txt, with one record for each taxon and child-parent-relationships representing the classification. Records in the extension files distribution.txt, vernacularname.txt and description.txt have a many-to-one relation with the records in taxon.txt and provide additional information for each taxon. The archive structure and term definitions are described in meta.xml. The dataset metadata are provided in eml.xml.
Figure 2 from: Desmet P, Brouilet L (2013) Database of Vascular Plants of Canada (VASCAN): a community contributed taxonomic checklist of all vascular plants of Canada, Saint Pierre and Miquelon, and Greenland. PhytoKeys 25: 55-67. https://doi.org/10.3897/phytokeys.25.3100
Figure 2 - Regional distribution of accepted species from the Database of Vascular Plants of Canada (VASCAN). For each region, the number of native, introduced and ephemeral species is shown, i.e. species with a confirmed presence in the region. The regions are ordered by total number of species.
Figure 1 from: Desmet P, Brouilet L (2013) Database of Vascular Plants of Canada (VASCAN): a community contributed taxonomic checklist of all vascular plants of Canada, Saint Pierre and Miquelon, and Greenland. PhytoKeys 25: 55-67. https://doi.org/10.3897/phytokeys.25.3100
Figure 1 - Taxonomic distribution of accepted species per family from the Database of Vascular Plants of Canada (VASCAN). The families are ordered by total number of species. Families with less than 80 species are grouped in 'Other families'.
Figure 4 from: García Sánchez J, Cabezudo B (2013) Herbarium of the University of Malaga (Spain): Vascular Plants Collection. PhytoKeys 26: 7-19. https://doi.org/10.3897/phytokeys.26.5396
Figure 4 - Distribution map of the records from the MGC-Cormof dataset. This map shows most of the records in the dataset (Iberian Peninsula and North of Morocco). Source: GBIF Data Portal (http://data.gbif.org/datasets/resource/8105/).
Figure 6 from: Espinosa M, López J (2013) Herbarium of Vascular Plants Collection of the University of Extremadura (Spain). PhytoKeys 25: 1-13. https://doi.org/10.3897/phytokeys.25.5341
Figure 6 - Geographical distribution of specimens in the Iberian Peninsula, Baleares, Canarias, Madeira and Azores.
Figure 3 from: Brosens D, Van Landuyt W, Vanhecke L (2012) Florabank1: a grid-based database on vascular plant distribution in the northern part of Belgium (Flanders and the Brussels Capital region). PhytoKeys 12: 59-67. https://doi.org/10.3897/phytokeys.12.2849
Figure 3 - Number of prospected 1 km? grids in each grid of 4?4 km for the period 1972-2004. A 1 km? grid cell is considered as prospected if at least 90 species have been recorded.
Figure 2 from: Brosens D, Van Landuyt W, Vanhecke L (2012) Florabank1: a grid-based database on vascular plant distribution in the northern part of Belgium (Flanders and the Brussels Capital region). PhytoKeys 12: 59-67. https://doi.org/10.3897/phytokeys.12.2849
Figure 2 - Number of prospected 1 km? grids in each grid of 4?4 km for the period 1939–1971. A 1 km? grid cell is considered as prospected if at least 90 species have been recorded.
Figure 1 from: Knapp S, De Egea J, Pena-Chocarro M, Espada C (2012) Checklist of vascular plants of the Department of Ñeembucú, Paraguay. PhytoKeys 9: 15-179. https://doi.org/10.3897/phytokeys.9.2279
Figure 1 - Map of the wetlands of eastern Paraguay; Estancia Redondo (Redondo Ranch) is located south of the Río Tebicuary at approximately 26°30' S latitude. The complex set of marshy wetlands is the dominant feature of the angle between the Río Paraguay and the Río Paraná.
Figure 3 from: Just A, Gourvil J, Millet J, Boullet V, Milon T, Mandon I, Dutrève B (2015) SIFlore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in France: Results of a collaborative project coordinated by the Federation of the National Botanical Conservatories. PhytoKeys 56: 47-60. https://doi.org/10.3897/phytokeys.56.5723
Figure 3 - Density of cells by richness of observed species: looking at the distribution within the dataset, it appears that cells with less than 250 distinct species recorded are over-represented.
Figure 4 from: Just A, Gourvil J, Millet J, Boullet V, Milon T, Mandon I, Dutrève B (2015) SIFlore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in France: Results of a collaborative project coordinated by the Federation of the National Botanical Conservatories. PhytoKeys 56: 47-60. https://doi.org/10.3897/phytokeys.56.5723
Figure 4 - Dataset completeness for Metropolitan France according to the Jackknife 1 estimator (data from 1990 to 2013). The number of records in each cell was used as an estimator of the sampling effort. The ratio between the observed and estimated richness of species measures the completeness of inventory in each surveyed cell (Vallet et al. 2012).
Figure 7 from: Gillespie LJ, Saarela JM, Sokoloff PC, Bull RD (2015) New vascular plant records for the Canadian Arctic Archipelago. PhytoKeys 52: 23-79. https://doi.org/10.3897/phytokeys.52.8721
Figure 7 - Calamagrostis stricta subsp. groenlandica: A habitat B habit, Saarela et al. 2576. Photographs by R.D. Bull.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.