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779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression [RNA-seq]
GEO Series GSE156094. Danio rerio. 12 samples. Type: Expression profiling by high throughput sequencing.
Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos [RNA-seq]
GEO Series GSE205781. Mus musculus. 61 samples. Type: Expression profiling by high throughput sequencing.
Mapping of epigenetic marks (H3K4me1, H3K4me3, H3K27ac), p300/CBP, PolII and CTCF on MDA-MB-231 genome
GEO Series GSE146822. Homo sapiens. 13 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Binding domain mutations provide insight into CTCF's relationship with chromatin and its contribution to gene regulation (RNA-seq, exit from pluripotency)
GEO Series GSE277846. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
CTCF and Cohesin (Rad21) ChIP-seq in male mouse liver
GEO Series GSE102997. Mus musculus. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Nucleosome dynamics specifies genome-wide binding of the male germ cell gene regulator CTCFL and of CTCF [ChIP-Seq]
GEO Series GSE34094. Mus musculus. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Rapid depletion of the cohesin subunits and CTCF reveals their role in maintaining high-order genome architecture [RNA-seq]
GEO Series GSE181849. Mus musculus. 38 samples. Type: Expression profiling by high throughput sequencing.
Widely Interspaced Zinc Finger Motifs, Wiz, binds active promoters and CTCF-binding sites and is required for normal neural function in the mouse
GEO Series GSE76909. Mus musculus. 19 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
CTCF demarcates chromatin domains
GEO Series GSE12889. Homo sapiens. 7 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing.
An RNA binding region in CTCF regulates chromatin looping and CTCF nuclear organization
GEO Series GSE123636. Mus musculus. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
CTCF contributes in a critical way to spermatogenesis and male fertility
GEO Series GSE76439. Mus musculus. 7 samples. Type: Expression profiling by array.
Distinct properties and functions of CTCF revealed by a rapidly inducible degron system [ChIP-Seq]
GEO Series GSE150415. Mus musculus. 33 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ChIP-seq analysis of CTCF binding sites in lymphocyte subsets
GEO Series GSE41743. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF [SMF]
GEO Series GSE234293. Mus musculus. 6 samples. Type: Methylation profiling by high throughput sequencing.
Dissecting developmental disorders caused by CTCF mutation at R567 [RNA-seq]
GEO Series GSE214689. Homo sapiens; Mus musculus. 27 samples. Type: Expression profiling by high throughput sequencing.
SmcHD1,H3k27me3,CTCF and RAd21 ChIP-seq
GEO Series GSE111820. Mus musculus. 52 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide binding of the insulator factors CTCF and CP190
GEO Series GSE12765. Drosophila melanogaster. 20 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by genome tiling array.
Nucleoporin 153 links nuclear pore complex to chromatin architecture by mediating CTCF and cohesin binding [RNA-Seq]
GEO Series GSE135645. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos
GEO Series GSE205783. Mus musculus. 170 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Abnormal microglia and enhanced inflammation-related gene transcription in mice with conditional deletion of Ctcf in Camk2a-Cre-expressing neurons [RPL_HC_CTCF]
GEO Series GSE108826. Mus musculus. 8 samples. Type: Expression profiling by array.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.