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289
datasets available to search
ShareScore release 0.9.0
Dataset results
289 results for “Cell Wall”
Single-cell RNA sequencing on the vein wall of mouse deep vein thrombosis
GEO Series GSE221978. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
RNA-Seq Analysis of Genes Differentially Expressed across temporal and spatial deposition of wall ingrowths in Arabidopsis Phloem Parenchyma Transfer Cells
GEO Series GSE107778. Arabidopsis thaliana. 18 samples. Type: Expression profiling by high throughput sequencing.
Allelic variation at a major QTL for cell wall related traits and coordinated changes in gene expression in maize
GEO Series GSE115157. Zea mays. 10 samples. Type: Expression profiling by high throughput sequencing.
Determination of the influence of caNrf2 expression and/or Dextran Sulfate Sodium treatment on genome wide mRNA expression in whole colon wall or colon epithelial cells
GEO Series GSE68156. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
Extensive temporal transcriptome and microRNA analyses identify molecular mechanisms underlying mitochondrial dysfunction induced by multi-walled carbon nanotubes in human lung cells
GEO Series GSE63580. Homo sapiens. 246 samples. Type: Expression profiling by array; Non-coding RNA profiling by array.
Immunomodulatory Effects of Yeast Cell Wall Compounds on mouse BMDM
GEO Series GSE101959. Mus musculus. 32 samples. Type: Expression profiling by array.
An endophytic Magnaporthaceae species reduces take-all disease in wheat through the induction of cell-wall mediated defence response pathways
GEO Series GSE242417. Triticum aestivum. 45 samples. Type: Expression profiling by high throughput sequencing.
SANS datasets for "Nanostructural analysis of enzymatic and non-enzymatic brown-rot fungal deconstruction of the lignocellulose cell wall"
<p>Small angle neutron scattering 1D profiles shown and analyzed in the manuscript titled: "Nanostructural analysis of enzymatic and non-enzymatic brown-rot fungal deconstruction of the lignocellulose cell wall" submitted to Frontiers.</p> <p> </p> <p>Manuscript abstract: </p> <p>Brown rot (BR) decay mechanisms employ carbohydrate-active enzymes (CAZymes) as well as a unique non-enzymatic chelator-mediated Fenton (CMF) chemistry to deconstruct lignocellulosic materials. Unlike white rot fungi, BR fungi lack peroxidases for lignin deconstruction, and also lack some endoglucanase/cellobiohydrolase activities. The role that the CMF mechanism plays in “opening up” the wood cell wall structure in advance of enzymatic action, and any interaction between CMF constituents and the highly selective CAZyme suite that BRs possess, is still unclear. Expression patterns for CMF redox metabolites and lytic polysaccharide monooxygenase (LPMO – AA9 family) genes were examined in this research to explore potential interactions, showing that some LPMO isozymes were upregulated with genes associated with CMF at early stages of brown rot by <em>Gloeophyllum trabeum</em>. In the structural studies, wood decayed by the <em>G. trabeum</em> was compared to CMF-treated wood, or CMF-treated wood followed by treatment with either the early-upregulated LPMO or a commercial CAZyme cocktail. Structural modification of decayed/treated wood was characterized using small angle neutron scattering. CMF treatment produced neutron scattering patterns similar to that of the BR decay indicating that both systems enlarged the nanopore structure of wood cell walls to permit enzyme access. Enzymatic deconstruction of cellulose or lignin in raw wood samples was not achieved via CAZyme cocktail or LPMO enzyme action alone. CMF treatment resulted in depolymerization of crystalline cellulose as attack progressed from the outer regions of individual crystallites. Multiple pulses of CMF treatment on raw wood showed a progressive increase in the spacing between the cellulose elementary fibrils, indicating the CMF eroded the matrix outside the bundles of elementary fibrils, leading to less tightly packed EFs. Periodate delignification treatment enhanced subsequent CMF treatment effects, and allowed both enzyme systems to further increase spacing of the elementary fibrils. Moreover, even after a single pulse of CMF treatment, both enzymes were apparently able to penetrate the cell wall to further increase elementary fibril spacing. The data suggest the potential for the early-upregulated LPMO enzyme to work in association with CMF chemistry, suggesting that <em>G. trabeum</em> may have adopted mechanisms to integrate non-enzymatic and enzymatic chemistries together during early stages of brown rot decay.</p>
Conformational changes in the essential E. coli septal cell wall synthesis complex suggest an activation mechanism
<p>Molecular dynamics trajectories and data analysis notebooks to accompany the manuscript "Conformational changes in the essential E. coli septal cell wall synthesis complex suggest an activation mechanism"</p> <p>This dataset consists of a single zip archive. The archives contains two folders: one for molecular dynamics trajectories and one for data analysis notebooks. Each folder contains a README file describing files within.</p>
Nocardia Rubra Cell Wall Skeleton in Combination With Prior Second- or Third-line Regimens for the Treatment of Potentially Hazardous Colorectal Cancer SD Status
ClinicalTrials.gov study NCT06356714. IPD Sharing: NO. Countries: 1. Publications: 0.
Nocardia Rubra Cell Wall Skeleton (N-CWS) Plus HAIC, Lenvatinib and Tislelizumab in Treating Patients With Advanced HCC
ClinicalTrials.gov study NCT05533892. IPD Sharing: NO. Countries: 1. Publications: 0.
Treatment of Pulmonary SUlcus, Pancoast and Chest Wall Non-small Cell Lung Cancer Employing Radiation, Immuno-oncology and Resection
ClinicalTrials.gov study NCT06331455. IPD Sharing: NO. Countries: 1. Publications: 0.
The Role of Unsteady Wall Shears Stress Stimuli on Human Umbilical Vein Endothelial Cells Harvested From Umbilical Cords
ClinicalTrials.gov study NCT04122794. IPD Sharing: NO. Countries: 1. Publications: 0.
Cytokinins control secondary cell wall formation in the inflorescence stem of Arabidopsis
GEO Series GSE300572. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
The DUF322 protein Asp23 of Staphylococcus aureus is membrane localized and functionally linked to cell wall stress
GEO Series GSE53134. Staphylococcus aureus subsp. aureus COL; Staphylococcus aureus subsp. aureus MW2; Staphylococcus aureus; Staphylococcus aureus subsp. aureus NCTC 8325; Staphylococcus aureus subsp. aureus N315; Staphylococcus aureus subsp. aureus USA300; Staphylococcus aureus subsp. aureus MRSA252; Staphylococcus aureus subsp. aureus Mu50; Staphylococcus aureus subsp. aureus MSSA476. 12 samples. Type: Expression profiling by array.
Bitter taste cells in the ventricular walls of the murine brain regulate glucose homeostasis
GEO Series GSE226066. Mus musculus. 14 samples. Type: Expression profiling by high throughput sequencing.
Botrytis cinerea infection accelerates ripening and cell wall disassembly in tomato fruit to promote disease
GEO Series GSE183836. Botrytis cinerea; Solanum lycopersicum. 18 samples. Type: Expression profiling by high throughput sequencing.
Comparative transcriptomics analysis of fatty acid-secreting Yarrowia lipolytica reveals importance of cell wall proteins
GEO Series GSE217432. Yarrowia lipolytica. 10 samples. Type: Expression profiling by high throughput sequencing.
A primary cell wall cellulose-dependent defense mechanism against vascular pathogens revealed by time-resolved dual-transcriptomics
GEO Series GSE168919. Arabidopsis thaliana; Fusarium oxysporum. 58 samples. Type: Expression profiling by high throughput sequencing.
Auxin-independent NAC pathway regulates cell wall metabolism in response to explant-specific wounding during regeneration in Arabidopsis
GEO Series GSE74587. Arabidopsis thaliana. 5 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.