Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
382
datasets available to search
ShareScore release 0.9.0
Dataset results
382 results for “Citrus”
FIGURE 5 in Proposal of new specific status for tea-infesting populations of the nominal citrus spiny whitefly Aleurocanthus spiniferus (Homoptera: Aleyrodidae)
FIGURE 5. (A, B, E) Aleurocanthus camelliae sp. nov. (C, D, F) A. spiniferus. (A–D) SEM of compound eyes; (A) Kyoto, Uji City, female; (B) Kyoto, Uji City, male; (C) Shizuoka, Shimizu City, female; (D) Shizuoka, Shimizu City, male); (E, F) SEM of marginal teeth (E, Kyoto, Uji City; F, Shizuoka, Shimizu City).
Figure 3 in Eustigmaeus floridensis sp. nov., a new mite species of the genus Eustigmaeus Berlese, 1910 (Acari: Stigmaeidae) from citrus in Florida
Figure 3. Eustigmaeus floridensis sp. nov. (male). (A) Dorsal view of idiosoma. (B) Palp. (C) Genital area.
Figure 2 in Eustigmaeus floridensis sp. nov., a new mite species of the genus Eustigmaeus Berlese, 1910 (Acari: Stigmaeidae) from citrus in Florida
Figure 2. Eustigmaeus floridensis sp. nov. (female). (A) Leg I. (B) Leg II. (C) Leg III. (D) Leg IV.
Figure 1 in Eustigmaeus floridensis sp. nov., a new mite species of the genus Eustigmaeus Berlese, 1910 (Acari: Stigmaeidae) from citrus in Florida
Figure 1. Eustigmaeus floridensis sp. nov. (female). (A) Dorsal view of idiosoma. (B) Ventral view of gnathosoma. (C) Palp. (D) Ventral view of female.
Soil respiration processed data at Palazzelli CREA_OFA citrus farm
<p>Soil respiration processed data at Palazzelli CREA_OFA citrus farm</p>
Supplementary tables for chapter 3: "Haplotype-resolved transcriptomics defines the inheritance and genetic architecture of response to Citrus Greening Disease"
<p>Dissertation chapter 3: "<span>Haplotype-resolved transcriptomics defines the inheritance and genetic architecture of response to Citrus Greening Disease"</span></p>
FIGURE 2 in Survey Of Phytoseiid Mite Species (Acari: Phytoseiidae) In Citrus Orchards In Lattakia Governorate, Syria
FIGURE 2: Dorsal shield of the female of Typhlodromus (Anthoseius) thesbites.
FIGURE 1 in Survey Of Phytoseiid Mite Species (Acari: Phytoseiidae) In Citrus Orchards In Lattakia Governorate, Syria
FIGURE 1: Map of Syria and locations of study sites in Lattakia governorate.
Genetic basis of cytonuclear conflicts in citrus hybridization, domestication, and diversification
<p>184.cp.variations.map.vcf.zip--the chloroplast variation map of 184 samples<br> 184.mt.variations.map.vcf.zip----the mitochondrial variation map of 184 samples<br> aligment1.fa-- the group of grapefruit, sweet orange and sour orange for mitochondrial heteroplasmy analysis<br> aligment2.fa-- the group of lemon for mitochondrial heteroplasmy analysis<br> coverage depth of 184 short reads samples.zip -- the coverage depth of BAMs in mitochondrial variation map in 184 samples<br> Fortunella hindsii mitochondrial genome.gb -- the conservation proteins annotation of kumquat reference mitochondrial genome<br> GWAS-118.samples.input.phenotype.for GWAS.txt -- the inputfiles for GWAS <br> GWAS-LD.linked.input.gwas.vcf.gz -- the LD linked variations for GWAS<br> LD.purning.nuclear.variation.map.vcf.gz -- LD purning nuclear variations for demography analysis<br> normalization.RNA-seqs.txt -- the nomarlization data of expression of mitochondrial genome<br> nuclear.variation.map.vcf.gz -- the nuclaer variation map<br> ORFs annotation based on Augustus.gtf -- the annotation gene structure using Augustus <br> pan-genome and aligned mitochondrial genomes.zip -- the pan-genome(.fa and .gfa) and aligned mitochondrial genomes<br> scaffold-assemblies.zip -- the scaffolds of mitochondrial genomes</p>
Highly Efficient Agrobacterium rhizogenes-mediated Genetic Transformation Technology Bypassing Tissue Culture in Citrus
<p>Highly efficient genetic transformation technology is of great significance for the gene function analysis and precision breeding of crops. However, the most commonly used genetic transformation technology mediated by <em>Agrobacterium tumefaciens</em> in plants especially xylophyta is time-consuming and inefficient, which seriously hinders the progress of gene function analysis. In this study, a simple and highly efficient genetic transformation technology mediated by <em>Agrobacterium rhizogenes</em> bypassing tissue culture is described. Only 2~8 weeks were required for the whole workflow, with an average successful transformation ratio of 57% in shoots from adult plants. By using this technology, we successfully transferred plasmids containing gRNA, Cas9, and other exogenous genes into citrus, and achieved genome editing on target loci and overexpressed multiple foreign genes at the same time. In this method, a student could simultaneously conduct genome editing experiment using 10 plasmids targeting different genome positions and finally obtained all the corresponding transformants with target DNA knocked out, indicating that <em>A. rhizogenes</em>-mediated genome editing technology is highly efficient. In addition, <em>A. rhizogenes</em> can be used for direct viral vector inoculation on citrus bypassing the step of viron enrichment in tobacco, which facilitates the experiment operation of virus-induced gene silence (VIGS) and foreign gene expression. In summary, we established a highly efficient genetic transformation technology bypassing tissue culture in citrus, which can be used for genome editing, gene overexpression, and virus-mediated gene function analysis. We anticipate that by removing high cost, heavy workload, long experiment period and other technical obstacles, this genetic transformation technology will be a valuable tool for routine investigation of endogenous and exogenous genes in citrus.</p>
Nonlinear time series analysis of the interaction between the citrus whitefly and the whitefly-specialist ladybird
<p>A comprehensive understanding of the top-down effects of natural enemies on agricultural pests is essential for achieving effective biological control in integrated pest management. However, it is typically difficult to identify causal effects between the interacting species from time series data, which have often been monitored for pest forecasting purposes in agricultural ecosystems, as it is likely to involve nonlinear (state-dependent) population dynamics. In this study, we applied a recently developed framework of nonlinear time series analysis (empirical dynamic modeling) to determine top-down and bottom-up effects between the citrus whitefly <i>Dialeurodes citri</i> and the whitefly-specialist ladybird <i>Serangium japonicum</i>. We used weekly monitoring data for the two species collected over 4 years in pesticide-free citrus groves located in Shizuoka Prefecture, central Japan. Although we were able to identify time-delayed positive effects of <i>D. citri </i>abundance on <i>S. japonicum</i> abundance, we failed to detect any significant causal effects of <i>S. japonicum</i> abundance on <i>D. citri</i> abundance. Moreover, weather variables (temperature and rainfall) were found to have only a negligible effect on the population dynamics of the two species. Our findings indicate that bottom-up rather than top-down effects predominate in the weekly dynamics of this predator–prey system. On the basis of these observations, we discuss whether <i>S. japonicum</i> would be an effective agent for the biological control of <i>D. citri</i> in open field systems.</p>
FIGURE 2 in Fusarium citri-sinensis sp. nov. (Ascomycota: Nectriaceae) isolated from fruit of Citrus sinensis in China
FIGURE 2. Morphological characteristics of Fusarium citri-sinensis (YZU 191316). A–B. colonies on PDA; C–D. conidium formed on the carnation leaf; E. microconidia; F–G. chlamydospores; H. macroconidia.—Scale bars: C–G = 10 μm, H = 25 μm.
FIGURE 1 in Fusarium citri-sinensis sp. nov. (Ascomycota: Nectriaceae) isolated from fruit of Citrus sinensis in China
FIGURE 1. Phylogenetic tree of Fusarium citri-sinensis and its related species based on the combined dataset of the ITS, EF-1α and RPB2 gene sequences. The maximum likelihood, maximum parsimony bootstrap support values>60% (BS), and Bayesian posterior probabilities>0.7 (PP) are given at the nodes (BS/PP). Type strains are marked 'T' or 'NT'.
Supplementary material 1 from: Eschen R, Grégoire, JC, Hengeveld GM, de Hoop MB, Rigaux L, Potting RPJ (2015) Trade patterns of the tree nursery industry in Europe and changes following findings of citrus longhorn beetle, Anoplophora chinensis Forster. NeoBiota 26: 1-20. https://doi.org/10.3897/neobiota.26.8947
Table S1: Explanation note: Summary of dynamics of the import of Acer plants into the Netherlands in 1998–2012. The number of importing companies relates to the confirmed importers of Acer spp. HU indicates Hungary, AS indicates East-Asia and NZ indicates New Zealand.
Supplementary material 2 from: Eschen R, Grégoire, JC, Hengeveld GM, de Hoop MB, Rigaux L, Potting RPJ (2015) Trade patterns of the tree nursery industry in Europe and changes following findings of citrus longhorn beetle, Anoplophora chinensis Forster. NeoBiota 26: 1-20. https://doi.org/10.3897/neobiota.26.8947
Table S2: Explanation note: Summary of the intra-European trade in Acer plants from 138 producers in the Boskoop demarcated area in 2009, broken down by country.
Developing epidemiological preparedness for a probable plant disease invasion: modelling citrus huánglóngbìng in the European Union
<p>Video 1: Spread of the vector in a single simulation in Region A (Valencia). Corresponds to Fig S10 in supplementary material. Maps show the measure of vector density within each cell and light grey shows initial exposure.</p> <p>Video 2: Spread of the pathogen in a single simulation in Region A (Valencia). Corresponds to Fig 3 in main text. Both vector and pathogen are introduced simultaneously at t=0 into a single 1km x 1km cell. Maps showing the density of infected citrus host units (E+C+I) within each cell at different times after introduction.</p> <p>Video 3: Spread of the pathogen in a single simulation in Region A (Valencia) using baseline parameters for detection and control. Corresponds to Fig 6 in main text. Maps show densities of infected citrus (E+C+I) in each 1km x 1km cell</p> <p>Video 4: Spread of the vector in a single simulation in Region B (Andalusia). Corresponds to Fig S13 in supplementary material. Maps show the measure of vector density within each cell and light grey shows initial exposure.</p> <p>Video 5: Spread of the pathogen in a single simulation in Region B (Andalusia). Corresponds to Fig S14 in supplementary material. Both vector and pathogen are introduced simultaneously at t=0 into a single 1km x 1km cell. Maps showing the density of infected citrus host units (E+C+I) within each cell at different times after introduction.</p> <p>Video 6: Spread of the pathogen in a single simulation in Region B (Andalusia) using baseline parameters for detection and control. Corresponds to Fig S17 in supplementary material. Maps show densities of infected citrus (E+C+I) in each 1km x 1km cell</p>
Development of a digital platform based on Artificial Intelligence for precision citrus farming
<p>The SPIDAP project aims at defining an innovative Decision Support System (DSS) based on<br>advanced sensors that consider hydrological soil conditions (tensiometer), plant phenotype<br>(Plantarray, a functional phenotyping system) and plant needs (bioristor, an in vivo sensor able to<br>continuously and effectively monitor plant water requirements) to increase irrigation water use<br>efficiency of citrus farming and concretely respond to the productive realities of the territory by<br>ensuring crop production and quality..</p>
Citrus Tree Root System Image Dataset: Effects of Propagation Methods on Root Architecture
<p>This dataset is composed of images from two different citrus rootstock trials designated "Field Trial 1" and "Field Trial 2". Each field trial was planted with trees of <em>Citrus sinensis</em> cv. 'Valencia' grafted onto 4 different, commercially available USDA citrus rootstocks: US-812, US-897, US-942, US-1516. The trees were excavated two years after planting, cleaned, dried, and imaged in two ways. First, the root systems were imaged radially as though you are looking down through the trunk of the tree with the roots radiating outward in all direction. Secondly, the root systems were imaged vertically in six different positions such that each image was a side view of the root system from a different angle. Additionally, the binary masks of the vertical root systems were included in each .tar file.</p> <p>All images were acquired with a Canon EOS Rebel T6 against a professional photography blue screen. A mapping of the image names to the experimental trial information is included in each .tar file, and a series of scaled images were taken before and after root system imaging to calculate the pixel to centimeter conversion for absolute measurements.</p> <p>This dataset is currently in beta as it may change at some point in the future, therefore until that time, this record will be set to restricted.</p>
Multiclass Masked and labelled Dataset for citrus leave diseases.
<p>Data for multiclass semantic segmentation , it will be masked and labelled the many classes that are present in the leaves dataset</p>
Fig. 2 in Antimicrobial and antioxidant efficacy of Citrus limon L. peel extracts used for skin diseases by Xhosa tribe of Amathole District, Eastern Cape, South Africa
Fig. 2. Nitric oxide scavenging activity of Citrus limon extracts. Results are means of 3 replicates.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.