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Fig. 3 in A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea

Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives in the order Rhizobiales, class Alphaproteobacteria. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes. Scale bar: 0.01 changes per nucleotide.

Fig. 2 in A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea

Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives in the order Caulobacterales, class Alphaproteobacteria. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes. Scale bar: 0.01 changes per nucleotide.

Fig. 5 in A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea

Fig. 5. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationships between the strains isolated in this study and their relatives of the order Rhodospirillales, class Alphaproteobacteria. Escherichia coli ATCC 11775T (X80725) was used as an outgroup (not shown). Bootstrap values (>70%) are shown above nodes. Scale bar: 0.01 changes per nucleotide.

Fig. 2 in Description of 39 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria

Fig. 2. Neighborjoining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Sphingomonadales in the class Alphaproteobacteria. Bootstrap values (>70%) are shown. Filled circles indicate the nodes recovered by the maximumlikelihood & maximumparsimony tree algorithms. Bar, 0.02 substitutions per nucleotide position.

Fig. 3 in Description of 39 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria

Fig. 3. Neighborjoining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Rhizobiales in the class Alphaproteobacteria. Bootstrap values greater than 70% are shown. Filled circles indicate the nodes recovered by the maximumlikelihood & maximumparsimony tree methods. Bar, 0.02 substitutions per nucleotide position.

Fig. 2 in Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria

Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Caulobacterales and Rhizobiales in the class Alphaproteobacteria. Bootstrap values (>70%) are shown in the neighbor-joining method. Bar, 0.02 substitutions per nucleotide position. The strain Escherichia coli ATCC 11775T is used as an outgroup.

Fig. 4 in Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria

Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Rhodospirillales in the class Alphaproteobacteria. Bootstrap values>70% are shown in the neighbor-joining tree. Bar, 0.02 substitutions per nucleotide position.

Fig. 1 in Description of 39 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria

Fig. 1. Transmission and scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, EgM1111; 2, IMCC12376; 3, 63DPR2; 4, FW2; 5, WW59; 6, HME9618; 7, WS23; 8, 01SU6; 9, SDN0101; 10, WM24; 11, M41; 12, 01SU7P; 13, R111; 14, LR3; 15, MT2F 6; 16, W533; 17, 7C17; 18, KTCe5; 19, LB3; 20, PMXR; 21, WM92; 22, MW2F51; 23, 61DPR27; 24, M49; 25, HME9619; 26, BSW2; 27, IMCC12390; 28, SDM0103; 29, BS16; 30, LR4; 31, IMCC12425; 32, BM15; 33, EgM3207; 34, KHS03; 35, KHS07; 36, SDM0205; 37, HME9615; 38, IMCC12392; 39, WW106.

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Fig. 2. A in Report of two unrecorded yeast species in the class Tremellomycetes

Fig. 2. A neighbor-joining phylogenetic tree reconstructed from comparative analysis of 26S rRNA gene sequences showing the relationships of strain PG2-2-10C with closely related species. Bootstrap values (>70%) based on neighbor-joining methods are shown at the branch nodes. Bar, 0.01 substitutions per nucleotide position (Trees, 1987).

opencc-by-4.0Aug 2024View details →

Fig. 1 in Report of two unrecorded yeast species in the class Tremellomycetes

Fig. 1. Morphology of cells from the unrecorded strains incubated at 10℃. The colonies of Holtermanniella wattica PG2-2-10C (A), Goffeauzyma gastrica DJ2-14-10C (B). The budding of Holtermanniella wattica PG2-2-10C (C), Goffeauzyma gastrica DJ2-14- 10C (D). All strains were grown after 3 days on YPD agar. Bars, 5 μm and 10 μm, respectively.

Fig. 6 in A report on 57 unrecorded bacterial species in Korea in the classes Betaproteobacteria and Gammaproteobacteria

Fig. 6. Neighbour-joining (NJ) tree based on the 16S rRNA gene sequence comparisons, showing the taxonomic position between the isolated 18 strains in this study and the notable type species from the orders Pseudomonadales, Vibrionales and Xanthomonadales in the class Gammaproteobacteria. The tree was primarily reconstructed using a neighbor-joining algorithm (NJ). Maximum parsimony (MP) and maximum likelihood (ML) algorithms were applied for additional comparisons. Corresponding branches are presented as filled diamonds; at the nodes, only bootstrap values of more than 70% are shown, which are expressed as a percentage of 1000 replicates (NJ/MP/ML). Bacillus subtilis subsp. subtilis NCIB 3610T (ABQL01000001) was established as an out-group. The bar indicates 0.05 substitutions per nucleotide.

Fig. 4 in A report on 57 unrecorded bacterial species in Korea in the classes Betaproteobacteria and Gammaproteobacteria

Fig. 4. Neighbour-joining (NJ) tree based on the 16S rRNA gene sequence comparisons, showing the taxonomic position between the 18 strains isolated in this study and the notable type species from the class Betaproteobacteria. The tree was primarily reconstructed using a neighbor-joining algorithm (NJ). Maximum parsimony (MP) and maximum likelihood (ML) algorithms were applied for additional comparisons. Corresponding branches are presented as filled diamonds; at the nodes, only bootstrap values of more than 70% are shown, which are expressed as a percentage of 1000 replicates (NJ/MP/ML). Escherichia coli ATCC 11775T (JMST01000030) was established as an outgroup. The bar indicates 0.02 substitutions per nucleotide.

Fig. 3 in A report on 57 unrecorded bacterial species in Korea in the classes Betaproteobacteria and Gammaproteobacteria

Fig. 3. Transmission electron micrographs or scanning electron micrographs of cells of the species in the order Pseudomonadales, Vibrionales and Xanthomonadales belonging to the Gammaproteobacteria isolated in this study. Strains: 1, KHN15; 2, IMCC25605; 3, YH-5; 4, S6-6; 5, LPB0123; 6, KYW941; 7, KYW1051; 8, YF5; 9, JD11; 10, JD16; 11, JD57; 12, LPB0083; 13, IMCC25618; 14, KHC14; 15, C2- 29; 16, NR 4-01; 17, NR 5-07; 18, HMF4401.

Fig. 3 in A report on 53 unrecorded bacteria species in Korea in the class Gammaproteobacteria

Fig. 3. Neighbor-joining phylogenetic tree (NJ) based on nearly complete 16S rRNA gene sequences showing the relationships between 25 isolated strains and their most closely related from the order Alteromonadales, Chromatiales and Enterobacterales of the class Gammaproteobacteria. Dots indicate that the corresponding nodes that were also recovered in the trees created with the maximum likelihood (ML) and maximum parsimony (MP) algorithms. Bootstrap values are indicated as percentages of 1000 resampled datasets, when greater than 70% (NJ/ML/ MP). Bar, 0.01 substitutions per nucleotide position. Bacillus subtilis subsp. subtilis NCIB 3610T (ABQL01000001) was used as the outgroup.

Fig. 2 in A report on 53 unrecorded bacteria species in Korea in the class Gammaproteobacteria

Fig. 2. Transmission electron micrographs of cells of the species in the order Oceanospirillales, Pseudomonadales, Vibrionales and Xanthomonadales belonging to the class Gammaproteobacteria in this study. Strain: 1, KYW1415; 2, GH3-6; 3, HMF9021; 4, LPB0189; 5, LPB0185; 6, LPB0208; 7, KYW1404; 8, 16_S3_M11; 9, 16_H2_V4; 10, LPB0181; 11, 16_H3_M12; 12, 16_H2_M14; 13, 16_H6_M1; 14, 16_H5_M7; 15, BC3402; 16, Gsoli 1532; 17, BC3406; 18, IMCC34228; 19, LPB0174; 20, LPB0190; 21, IMCC34186; 22, LPB0202; 23, IMCC34213; 24, IMCC34225; 25, IMCC34148; 26, 17J9-2; 27, MMS17-SY254; 28, 16H1E7.

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Fig. 2. A in A report on 15 unrecorded bacterial species of Korea isolated in 2016, belonging to the class Betaproteobacteria

Fig. 2. A neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the genus Paraburkholderia. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.005 substitutions per nucleotide position.

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Fig. 1 in A report on 15 unrecorded bacterial species of Korea isolated in 2016, belonging to the class Betaproteobacteria

Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. The cells were cultured at their optimal growth conditions. Strains: 1, POA39; 2, 2PKSH112; 3, D8-11; 4, 7227; 5, 8312; 6, 6191; 7, HMF4664; 8, HMF4541; 9, HMF4544; 10, SH4; 11, MMS16-CNU072; 12, MMS16-CNU135; 13, MMS16-CNU376; 14, MMS16-CNU436; 15, MMS16-CNU462.

opencc-by-4.0Dec 2018View details →

Fig. 4. A in A report on 15 unrecorded bacterial species of Korea isolated in 2016, belonging to the class Betaproteobacteria

Fig. 4. A neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the family Neisseriaceae, Oxalobacteraceae and Ralstonia_f. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 substitutions per nucleotide position.

Fig. 1 in A report of 38 unrecorded bacterial species in Korea within the classes Bacilli and Deinococci isolated from various sources

Fig. 1. Transmission electron micrographs of cells. Strains: 1, 17J49-1; 2, GH4-58; 3, GH1-30; 4, LM2308; 5, MMS17-SY053; 6, LM2412; 7, LM2319; 8, NA_4; 9, 17J48-21; 10, MMS17-SY085; 11, HMF8043; 12, GH4-63; 13, r2a103fa330; 14, HC_97; 15, 17J76-8; 16, 16_H1_ F15; 17, LT3404; 18, HC_63; 19, KYW1352; 20, 17J30-13; 21, 17J49-7; 22, GH4-13; 23, NA_7; 24, CAU 1472; 25, R2A_1; 26, VM3406; 27, CAU 1479; 28, LPB0164; 29, LPB0165; 30, LPB0166; 31, CAU 1476; 32, CAU 1477; 33, CAU 1478; 34, BT3501; 35, VR3408; 36, LR3301; 37, HMF7345; 38, NM-1.

Fig. 2 in A report of 38 unrecorded bacterial species in Korea within the classes Bacilli and Deinococci isolated from various sources

Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA sequences, showing the relationship between the isolates and their relatives of the order Bacillales. Bootstrap values (>70%) are shown. Escherichia coli DSM 30083T (X801725) was used as an outgroup. Bar, 0.05 substitutions per nucleotide position.