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238 results for “Experimental testing”
Data from: Phenological synchrony between a butterfly and its host plants: experimental test of effects of spring temperature
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Data from: Eggshells as hosts of bacterial communities: an experimental test of the antimicrobial egg coloration hypothesis
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Data from: An experimental test of the effect of predation upon behaviour and trait correlations in threespine stickleback
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Data from: Capuchins, space, time and memory: an experimental test of what-where-when memory in wild monkeys
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Data from: Phylogenetic and experimental tests of interactions among mutualistic plant defense traits in Viburnum (Adoxaceae)
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Data from: Whether larval amphibians school does not affect the parasite aggregation rule: testing the effects of host spatial heterogeneity in field and experimental studies
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Experimentally testing the function of anal fins in the bluefin killifish, <em>Lucania goodei</em>
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Data from: Experimental test of plant defense evolution in four species using long-term rabbit exclosures
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Data from: Metabolism drives demography in an experimental field test
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The landscape of fear has individual layers: an experimental test of among-individual differences in perceived predation risk during foraging
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An experimental test to separate the effects of male age and mating history on female mate choice
<p>Should females prefer older males as mates? Male survival to old age might indicate the presence of fitness-enhancing genes that increase offspring fitness. However, many correlational studies show that mating with older males can lower female fecundity, and even reduce offspring fitness due to epigenetic or germline mutation effects. One problem in quantifying female choice based on male age is that age is usually confounded with mating history. This begs a question: Do females choose males based on their age, or their mating history? The answer requires an experimental approach, but few such studies exist. Here we test if experimentally-induced variation in the mating history of old and young males (12 week difference in post-maturity age) affects female choice in the eastern mosquitofish (<i>Gambusia holbrooki</i>). To vary mating history, adult males were either allowed to freely mate with females for three weeks, or they only had visual contact with females. Immediately thereafter, we ran four-choice mating trials, using association time, to test the effects of male age and mating history (2x2 design) on male attractiveness. Females did not show a clear preference for males based on either characteristic. This was not due to a lack of female choice: females spent significantly more time with larger males. In addition, female choice was significantly repeatable across four trials: twice as a virgin, twice as a non-virgin. Finally, female mating status (virgin or non-virgin) did not affect her choice of mate, although virgin females spent significantly more time associating with test males.</p>
Data from: Genetics of adaptation: experimental test of a biotic mechanism driving divergence in traits and genes
The genes underlying adaptations are becoming known, yet the causes of selection on genes -- a key step in the study of the genetics of adaptation -- remains uncertain. We address this issue experimentally in a threespine stickleback species pair showing exaggerated divergence in bony defensive armor in association with competition-driven character displacement. We used semi-natural ponds to test the role of a native predator in causing divergent evolution of armor and two known underlying genes. Predator presence/absence altered selection on dorsal spines and allele frequencies at the Msx2a gene across a generation. Evolutionary trajectories of alleles at a second gene, Pitx1, and the pelvic spine trait it controls, were more variable. Our experiment demonstrates how manipulation of putative selective agents help to identify causes of evolutionary divergence at key genes, rule out phenotypic plasticity as a sole determinant of phenotypic differences, and eliminate reliance on fitness surrogates. Divergence of predation regimes in sympatric stickleback is associated with coevolution in response to resource competition, implying a cascade of biotic interactions driving species divergence. We suggest that as divergence proceeds, an increasing number of biotic interactions generate divergent selection, causing more evolution in turn. In this way, biotic adaptation perpetuates species divergence through time during adaptive radiation in an expanding number of traits and genes.
Inflation test on eye globe for: Experimental evaluation of stiffening effect induced by UVA/riboflavin corneal cross-linking using intact porcine eye globes
<p><span>UVA/riboflavin corneal cross-linking (CXL) is a common used approach to treat progressive keratoconus. This study aims to investigate the alteration of corneal stiffness following CXL by mimicking the inflation of the eye under the <i>in vivo</i> loading conditions. Seven paired porcine eye globes were involved in the inflation test to examine the corneal behaviour. Cornea-only model was constructed using the finite element method, without considering the deformation contribution from sclera and limbus. Inverse analysis was conducted to calibrate the non-linear material behaviours in order to reproduce the inflation test. The corneal stress and strain values were then extracted from the finite element models and tangent modulus was calculated under stress level at 0.03 MPa. UVA/riboflavin cross-linked corneas displayed a significant increase in the material stiffness. At the IOP of 27.25 mmHg, the average displacements of corneal apex were 307 ± 65 μm and 437 ± 63 μm (p = 0.02) in CXL and PBS corneas, respectively. Comparisons performed on tangent modulus ratios at a stress of 0.03 MPa, the tangent modulus measured in the corneas treated with the CXL was 2.48 ± 0.69, with a 43±24% increase comparing to its PBS control. The data supported that<b> </b>corneal material properties can be well-described using this inflation methods following CXL. The inflation test is valuable for investigating the mechanical response of the intact human cornea within physiological IOP ranges, providing benchmarks against which the numerical developments can be translated to clinic. </span></p>
Data from: Herbivore effect traits and their impact on plant community biomass: an experimental test using grasshoppers
1. Using trait-based approaches to study trophic interactions may represent one of the most promising approaches to evaluate the impact of trophic interactions on ecosystem functioning. To achieve this goal, it is necessary to clearly identify which traits determine the impact of one trophic level on another. 2. Using functionally contrasting grasshopper species, we tested the ability of multiple traits (morphological, chemical and biomechanical) to predict herbivore impact on the biomass of a diverse plant community. We set up a cage experiment in an old species rich grassland field and evaluated how multiple candidate grasshopper effect traits mediated herbivore impact on plant biomass. 3. Grasshoppers had different impact on plant community biomass (consuming up to 60 % of plant community biomass). Grasshopper impact was positively correlated with their incisive strength while body size or grasshopper C:N ratio exhibited low predictive ability. Importantly, the strong relationship between the incisive strength and the impact was mediated by the grasshopper feeding niche, which was well predicted in our study by two simple plant traits (leaf dry matter content, leaf C:N ratio). Feeding niche differences between grasshoppers were explained by differences in incisive strength, highlighting the fundamental linkage between grasshopper effect traits and their niche. 4. Our study contributes to the development of the trait-based approach in the study of trophic interactions by providing a first experimental test of the relationship between herbivore effect traits, their impact on plant community biomass, and in a larger extent on ecosystem functioning. By comparing the relative importance of multiple interacting grasshopper traits, our study showed that incisive strength was a key effect trait which determined grasshopper feeding niche and its relative impact on plant community biomass.
Data from: Experimental test of genetic rescue in isolated populations of brook trout
Genetic rescue is an increasingly considered conservation measure to address genetic erosion associated with habitat loss and fragmentation. The resulting gene flow from facilitating migration may improve fitness and adaptive potential, but is not without risks (e.g., outbreeding depression). Here, we conducted a test of genetic rescue by translocating ten (five of each sex) brook trout (Salvelinus fontinalis) from a single source to four nearby and isolated stream populations. To control for the demographic contribution of translocated individuals, ten resident individuals (five of each sex) were removed from each recipient population. Prior to the introduction of translocated individuals, the two smallest above-barrier populations had substantially lower genetic diversity, and all populations had reduced effective number of breeders relative to adjacent below-barrier populations. In the first reproductive bout following translocation, 31 of 40 (78%) translocated individuals reproduced successfully. Translocated individuals contributed to more families than expected under random mating and generally produced larger full-sibling families. We observed relatively high (>20%) introgression in three of the four recipient populations. The translocations increased genetic diversity of recipient populations by 45% in allelic richness and 25% in expected heterozygosity. Additionally, strong evidence of hybrid vigour was observed through significantly larger body sizes of hybrid offspring relative to resident offspring in all recipient populations. Continued monitoring of these populations will test for negative fitness effects beyond the first generation. However, these results provide much-needed experimental data to inform the potential effectiveness of genetic rescue-motivated translocations.
Data from: Sexual selection and the evolution of male and female cognition: a test using experimental evolution in seed beetles
The mating system is thought to be important in shaping animal intelligence and sexual selection has been depicted as a driver of cognitive evolution, either directly by promoting superior cognitive ability during mate competition, or indirectly via genic capture of sexually selected traits. However, it remains unclear if intensified sexual selection leads to general improvements in cognitive abilities. Here, we evaluated this hypothesis by applying experimental evolution in seed beetles. Replicate lines, maintained for 35 generations of either enforced monogamy (eliminating sexual selection) or polygamy, were challenged to locate and discriminate among mates (male assays) or host seeds (female assays) in a spatial chemo-sensory learning task. All lines displayed learning between trials. Moreover, polygamous males outperformed monogamous males, providing evidence that sexual selection can lead to the evolution of improved male cognition. However, there were no differences between regimes in rates of male learning, and polygamous females showed no improvement in host search and even signs of reduced learning. Hence, sexual selection increased performance in cognitively demanding mate search, but it did not lead to general increases in cognitive abilities. We discuss the possibility that sexually antagonistic selection is an important factor maintaining abundant genetic variation in cognitive traits.
Data from: An experimental test of the relationship between yolk testosterone and the social environment in a colonial passerine
Maternal hormones can be transferred to offspring during prenatal development in response to the maternal social environment, and may adaptively alter offspring phenotype. For example, numerous avian studies show that aggressive competition with conspecifics tends to result in females allocating more testosterone to their egg yolks, and this may cause offspring to have more competitive phenotypes. However, deviations from this pattern of maternal testosterone allocation are found, largely in studies of colonial species, and have yet to be explained. Colonial species may have different life-history constraints causing different yolk testosterone allocation strategies in response to conspecific competition, but few studies have experimentally tested whether colonial species do indeed differ from that of solitary species. To test this, we collected eggs from zebra finches (Taeniopygia guttata), a colonial species, in the presence and absence of conspecific intrusions. Females did not alter the concentration of testosterone deposited in eggs laid during intrusions despite becoming more aggressive. These results suggest that maternal effects are not characterized by a uniform response to the social environment, but rather need to be contextualized with life-history traits.
Data from: Effect of detection heterogeneity in occupancy-detection models: an experimental test of time-to-first-detection methods
Imperfect detection can bias estimates of site occupancy in ecological surveys but can be corrected by estimating detection probability. Time-to-first-detection (TTD) occupancy models have been proposed as a cost-effective survey method that allows detection probability to be estimated from single site visits. Nevertheless, few studies have validated the performance of occupancy-detection models by creating a situation where occupancy is known, and model outputs can be compared with the truth. We tested the performance of TTD occupancy models in the face of detection heterogeneity using an experiment based on standard survey methods to monitor koala (Phascolarctos cinereus) populations in Australia. Known numbers of koala faecal pellets were placed under trees, and observers, uninformed as to which trees had pellets under them, carried out a TTD survey. We fitted five TTD occupancy models to the survey data, each making different assumptions about detectability, to evaluate how well each estimated the true occupancy status. Relative to the truth, all five models produced strongly biased estimates, overestimating detection probability and underestimating the number of occupied trees. Despite this, goodness-of-fit tests indicated that some models fitted the data well, with no evidence of model misfit. Hence, TTD occupancy models that appear to perform well with respect to the available data may be performing poorly. The reason for poor model performance was unaccounted for heterogeneity in detection probability, which is known to bias occupancy-detection models. This poses a problem because unaccounted for heterogeneity could not be detected using goodness-of-fit tests and was only revealed because we knew the experimentally determined outcome. A challenge for occupancy-detection models is to find ways to identify and mitigate the impacts of unobserved heterogeneity, which could unknowingly bias many models.
Data from: An experimental test of the effects of dispersal and the paradox of enrichment on metapopulation persistence
Many species exhibit high-amplitude, extinction-prone cycles, for instance due to resource enrichment (called the paradox of enrichment). How do such species manage to persist? One possibility is metapopulation dynamics, but it is unclear if these can mitigate the paradox of enrichment. The paradox of enrichment might increase local population extinction rates, and might also increase the spatial synchrony of population fluctuations because population cycles are easily synchronized by even low rates of dispersal. Spatially-synchronous population fluctuations would leave no scope for rescue effects, and spatially-synchronous local extinctions would leave no source for recolonization. We conducted a protist microcosm experiment to test how dispersal and enrichment affect the persistence of predator-prey metapopulations by altering spatial synchrony. We assembled 54, 4-patch metapopulations of the protist predator Euplotes patella and its protist prey Tetrahymena pyriformis. Each metapopulation experienced one of nine dispersal rates, crossed with one of 6 enrichment levels. We tested the effects of enrichment and dispersal on predator-prey cycle amplitude, predator population extinction risk, spatial synchrony of predator population fluctuations, and predator metapopulation persistence time. Enrichment increased predator-prey cycle amplitude but had no detectable effect on population extinction risk. Dispersal had no effect on predator-prey cycle amplitude. Spatial synchrony increased with enrichment and dispersal. Metapopulation persistence decreased with enrichment and spatial synchrony. We conclude that increasing enrichment reduced metapopulation persistence primarily by increasing spatial synchrony of local extinctions, rather than by increasing their frequency. These results highlight the importance of synchrony-preventing mechanisms for metapopulation persistence.
Data from: Sexual selection and assortative mating: an experimental test
Mate choice and mate competition can both influence the evolution of sexual isolation between populations. Assortative mating may arise if traits and preferences diverge in step, and, alternatively, mate competition may counteract mating preferences and decrease assortative mating. Here, we examine potential assortative mating between populations of Drosophila pseudoobscura that have experimentally evolved under either increased ('polyandry') or decreased ('monogamy') sexual selection intensity for 100 generations. These populations have evolved differences in numerous traits, including a male signal and female preference traits. We use a two males: one female design, allowing both mate choice and competition to influence mating outcomes, to test for assortative mating between our populations. Mating latency shows subtle effects of male and female interactions, with females from the monogamous populations appearing reluctant to mate with males from the polyandrous populations. However, males from the polyandrous populations have a significantly higher probability of mating regardless of the female's population. Our results suggest that if populations differ in the intensity of sexual selection, effects on mate competition may overcome mate choice.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.