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414 results for “Generative Model”
Supplemental Material for 'Deep Generative Models of Protein Structure Uncover Distant Relationships Across a Continuous Fold Space' and DeepUrfold
<p>Data provided for the paper Draizen, EJ, Veretnik, S, Mura, C, and Bourne, PE. "Deep Generative Models of Protein Structure Uncover Distant Relationships Across a Continuous Fold Space." <em>Nature Communications</em>, Aug. 2024.</p> <div> </div> <p> </p>
Particle trajectories generated by the eDNA fate and transport model for the Atlantic bottlenose dolphin (Tursiops truncatus) -- Part I
<ul> <li>"release" includes particle trajectories generated by the eDNA fate and transport model, which was driven by the hydrodynamics simulated with the realistic wind and tidal forcings.</li> <li>The python codes used to read the particle trajectories and get the particle counts in each model grid cell can be found in https://github.com/Jilian0717/eDNA_fate_transport_model/tree/main/particle_density</li> </ul>
Particle trajectories generated by the eDNA fate and transport model for the Atlantic bottlenose dolphin (Tursiops truncatus) -- Part II
<ul> <li>"release_no_wind" includes particle trajectories generated by the eDNA fate and transport model, which was driven by the hydrodynamics simulated without wind forcing. The purpose is to diagnose the influence of wind on particle distributions.</li> <li>The python codes used to read the particle trajectories and get the particle counts in each model grid cell can be found in https://github.com/Jilian0717/eDNA_fate_transport_model/tree/main/particle_density</li> </ul>
What Can Generative Modelling Do for Interpolation of Extremely Sparse Wind Farm Seismic Data
<p>2024 Global energy transition abstract about diffusion model data interpolation. </p>
The comparison of structured abstracts generated by the ChatGPT language model with the author's original abstracts derived from research papers
<p>The study utilized publications in the field of information science, both in Polish and English, which appeared in the journal <em>Zagadnienia Informacji Naukowej – Studia Informacyjne</em> during the 2022-2023 period. A total of 10 research papers were selected – 5 in Polish (PL1-PL5) and 5 in English (EN1-EN5).</p>
Dataset for generation of LOD4 models for buildings towards the automated 3D modeling of BIMs and digital twins
<div> <div>This repository contains the dataset used for the automated image-based generation of LOD4 models for buildings, along with the corresponding results. The methodology utilizing this dataset was presented in the paper "Generation of LOD4 models for buildings towards the automated 3D modeling of BIMs and digital twins" by Pantoja-Rosero et., al. (2024) (https://doi.org/10.1016/j.autcon.2024.105822).</div> </div>
Datasets for reproducing the results in "True random number generators with flicker noise: stochastic model, min-entropy calculation and online test"
<p>Datasets for reproducing the results in "True random number generators with flicker noise: stochastic model, min-entropy calculation and online test"</p> <p>Includes scripts for generating raw results, postprocessing scripts, as well as scripts/notebooks for generating plots for the manuscript</p>
Supplementary material for Evaluating Legal Compliance of Smart Contracts Generated by Large Language Models
<p>This repository contains the supplementary material for the paper titled "Evaluating Legal Compliance of Smart Contracts Generated by Large Language Models". It includes natural-language legal contracts, their smart contract implementations, and Petri net models of said legal contracts contracts.</p>
Air parcel trajectories data generated by MIMICA code and simulation results generated by a trajectory box model
<p>The dataset includes trajectories of air parcels extracted from the large-eddy (cloud-resolving model) simulations of the deep convective clouds from the Amazon based on the soundings retrieved on April 8, 2020, April 23, 2020, and April 27, 2020, over Manaus, Brazil, as well as the results of the chemical box model simulations quantifying the transport of some atmospheric trace gases abundant in the Amazon.</p>
Pedler creek streamflow generation: Model input files for Pedler Creek
<p>This repository contains supplementary material and all of the model input files for the results presented in the article Taking theory to the field: streamflow generation mechanisms in an intermittent Mediterranean catchment</p>
Viet Nam Technology catalogue for power generation and storage. Input for power system modelling
<p>The first Viet Nam Technology Catalogue was published in 2019. This new version includes all the technologies from the 2019 version that have been reviewed and updated where necessary. A main focus of the update has been to add new subcategories of technologies (roof-top solar PV, floating offshore wind, low wind speed turbines, improved flexibility of coal fired plants and pollution prevention technologies for coal power) as well as completely new technology descriptions and data sheets (tidal power, wave power, carbon capture and storage, coal CFB boilers and industrial cogeneration).</p> <p>This publication is developed under the Danish-Vietnamese Energy Partnership.</p> <p>The technologies described in this catalogue cover both very mature technologies and emerging technologies, which<br> are expected to improve significantly over the coming decades, both with respect to performance and cost. This<br> implies that the cost and performance of some technologies may be estimated with a rather high level of certainty<br> whereas, in the case of other technologies, both cost and performance today and in the future is associated with a<br> high level of uncertainty. All technologies have been grouped within one of four categories of technological<br> development described in the section on research and development indicating their technological progress, their<br> future development perspectives and the uncertainty related to the projection of cost and performance data.</p> <p>The technologies in the catalogue include the power production unit and the connection to the grid. This means<br> that the boundary for both cost and performance data are the generation assets plus the infrastructure required to<br> deliver the energy to the main grid. For electricity, this is the nearest substation of the transmission grid. This<br> implies that a MW of electricity represents the net electricity delivered, i.e. the gross generation minus the auxiliary<br> electricity consumed at the plant. Hence, efficiencies are also net efficiencies.</p> <p>The text and data have been edited based on Vietnamese cases to represent local conditions. For the mid- and long-<br> term future (2030 and 2050) international references have been relied upon for most technologies since Vietnamese<br> data is expected to converge to these international values. In the short run differences may exist, especially for the<br> emerging technologies. Differences in the short run can be caused by e.g. current rules and regulations and level of<br> market maturity of the technology. Differences in both the short and long run can be caused by local physical<br> conditions, e.g. seabed material and offshore conditions can affect costs of offshore wind farms and wind speed can<br> affect the dimensioning of rotor vs. generator which can influence the cost, or domestic coal quality can affect<br> efficiency and variable cost of coal-fired plants as well.</p> <p>Land use is assessed but the cost of land is not included in the total cost assessment since this depends on local<br> conditions.</p>
Generative models for hadron shower simulation in fundamental physics
<p>This is a subset of data used in our NeurIPS 2021 submission paper.</p>
Abstraction-based Trace Generation to Validate Semantics of Formal Verifiers: Validation Model Suite
<p>Dataset of the Scientific Students’ Association Report titled Abstraction-based Trace Generation to Validate Semantics of Formal Verifiers.</p> <p>These files contain the validation model test suite and the generated traces. The models and traces are in the format of the Gamma modeling tool.</p> <p><em>validation-model-suite/model/package<Letter>/model<Number> </em>contains the files for a given model:<br> - stm.gcd is the statemachine,<br> - default.ggen (and in Package F also abstraction.ggen) is the Gamma script executing trace generation and the generated traces can be found in the default (and abstraction) directories.<br> The report of Theta on possible coverage violation is in the traces directory (report.txt).</p> <p> </p> <p>The prototype implementation of trace generation can be found at: https://github.com/AdamZsofi/gamma/tree/dev-tracegen</p>
Processing steps to generate a Digital Surface Model based on SPOT-7 tri-stereo images published in the study "An assessment of the effects of DEM quality and spatial resolution on a model for mapping lahar inundation areas at volcan Copahue (Argentina & Chile)" in the Journal of South American Earth Sciences https://doi.org/10.1016/j.jsames.2022.104138
<p>The Digital Surface Model (DSM) was created from SPOT-7 tri-stereo images for the Copahue volcano between the border of Argentina and Chile. Two versions of the DSM are provided: an unfiltered product and a final, filtered product. The final product has a spatial resolution of 5-m and was used for lahar inundation modeling for the Copahue volcano (Viotto, Toyos, and Bookhagen 2022, <a href="https://doi.org/10.1016/j.jsames.2022.104138">https://doi.org/10.1016/j.jsames.2022.104138</a> : An assessment of the effects of DEM quality and spatial resolution on a model for mapping lahar hazard inundation at Volcán Copahue (Argentina & Chile). <em>Journal of South American Earth Sciences</em> ). The dataset provided should be cited together with the article. </p> <p><strong>DSM processing </strong></p> <p>The source images were given by a SPOT-7 snow- and cloud-free triplet (Nadir, Backward and Forward) of 1.5 m spatial resolution from 19 April 2018 (SPOT Image, Airbus Defence and Space GmbH, distributed by CONAE; Dataset ID: <em>SEN_SPOT7_20180419_142955500_000</em>, delivered by CONAE as <em>DS_SPOT7_20180419</em>).</p> <p>The data were processed with the suite of digital photogrammetry tools AMES Stereo Pipeline ASP (Beyer et al., 2018). The procedure for the generation of the DSM is summarized by following steps: </p> <ol> <li> <p>The orbital parameters (RCP models) were adjusted using the bundle adjustment tool with no ground control points, since they were unavailable.</p> </li> <li> <p>The scenes were map-projected onto the NASADEM (spatial resolution of 30 m) elevation dataset, assisted by the results of the orbital adjustment in Step 1.</p> </li> <li>The stereo correlation of the map-projected scenes including the results of the adjusted orbital parameters, was performed three times, using as first scene (i.e., primary image) the nadir (N), backward (B), and forward (F) images . In each run, the order of images to perform the stereo correlation was: N-F-B, F-N-B, and B-N-F. Thus, three point clouds were generated. Specific ASP correlator settings (other than defaults parameters; for details see the provided stereo-default file) were set in the following way: <em>Correlation Kernel</em>: 15 x 15 pixels; <em>Sub-pixel Refinement Kernel</em>: 21 x 21 pixels; <em>Subpixel Refinement Mode</em>: 2 (Weighted Affine Adaptive Window Correlator EM)</li> <li> <p>The three point clouds were merged into one point cloud with a regular grid of 5 m (unfiltered product, known as <em>DSM_Copahue_UTM19S_WGS84_5m_raw.tif</em>).</p> </li> </ol> <p>The quality of the final point cloud was assessed by comparing the unfiltered DSM with a spatial resolution of 12-m against the WorldDEM<sup>TM</sup> elevation dataset (Collins et al., 2015). The WorldDEM was provided by Airbus Defence and Space GmbH under license for the scope of the Viotto et al., 2022 study. The comparison of the pixel-to-pixel heights above the ellipsoid (WGS84) between the two datasets resulted in a mean difference of 0.67 m and a standard deviation of +/- 4.82 m. </p> <p>Comprehensive details on the methodologies evaluated to create the dataset with ASP, can be found in the corresponding master's thesis “Topografía digital y modelado de lahares en el Volcán Copahue, Argentina-Chile” from S. Viotto (link: https://rdu.unc.edu.ar/handle/11086/15384). Recommended literature about processing DEMs from SPOT imagery is given by Mueting et al., 2021 (<a href="https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2021JF006330">https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2021JF006330</a>). </p> <p><strong>Creation of the Final, Filtered DSM product</strong></p> <p>The corrections and improvements applied to the unfiltered product to create the final, filtered DSM (named DSM_Copahue_UTM19S_WGS84_5m_VoidFilled.tif) are summarized by following steps. </p> <p> </p> <ol> <li> <p><em>Water Bodies Delineation</em></p> </li> </ol> <p>The delineation of the water bodies was based on a mask created from the free access water bodies datasets provided by the Instituto Geográfico Nacional of Argentina (<a href="https://www.ign.gob.ar/NuestrasActividades/InformacionGeoespacial/CapasSIG">https://www.ign.gob.ar/ NuestrasActividades/InformacionGeoespacia l/CapasSIG</a>) and by the Ministerio de Bienes Nacionales in Chile ( <a href="https://www.ide.cl/index.php/aguas-continentales/item/1508-catastro-de-lagos">https://www.ide.cl/index.php /aguas-continentales/item/1508-catastro-de-lagos</a>). A total of 45 lakes within the area of interest were considered. Lakes with areas below or equal to 25 m2 were smoothed with a median filter in the last step. Lakes with areas above this threshold were filled in with a constant value and their borders were smoothed with a median filter to provide smooth shorelines.</p> <p><em>2 . Void Filling</em></p> <p>Voids (other than water bodies) were filled with the tool “Close Gaps” from Saga GIS software. </p> <p><em>3. Smoothing</em></p> <p>Finally, the elevation dataset was smoothed with a median filter using a 3 x 3 pixel window, excluding water bodies filled in the step 1. </p> <p><strong>Final Remarks and Suggestion</strong></p> <p>The quality assessment of the final version by visual inspection of the hillshades suggested an improvement of the signal to noise ratio. However, the void filling process may be improved.</p> <p><br> </p> <p><strong>Dataset Description</strong></p> <table align="center"> <caption> </caption> <tbody> <tr> <td>Digital Surface Models</td> <td> <p>No Data Value = -9999</p> <p>Format = float 32 bit</p> <p>File Format = GeoTiff</p> <p>Vertical Datum: WGS84</p> <p>Projection information: EPSG 32719 (UTM19S)</p> <p>Spatial Resolution: 5m (subfix: <em>_5m</em>) </p> <p>Versions: </p> <ul> <li> <p>Unfiltered product: without corrections <em>DSM_Copahue_UTM19S_WGS84_5m_raw.tif</em></p> </li> <li> <p>Final, filtered product: smoothed and void filled <em>DSM_Copahue_UTM19S_WGS84_5m_VoidFilled.tif</em></p> </li> </ul> </td> </tr> <tr> <td>Water Bodies Mask</td> <td> <p>No Lake Value = 0</p> <p>Lakes Values = 1 to 45</p> <p>File Format= GeoTiff</p> <p>Spatial Resolution: 5m (subfix: <em>_5m</em>)</p> <p>Projection information : EPSG 32719 (UTM19S)</p> <p><em>WB_mask_5m_UTM19S.tif</em></p> </td> </tr> </tbody> </table> <p> </p> <p> </p> <p><strong>Repository structure</strong></p> <p>|__ 01_Scripts</p> <p> |+ run21_CopahueDSM_AMES_sviotto.sh</p> <p> |+ stereo.default</p> <p>|__ 02_DSMs</p> <p> |+ DSM_Copahue_UTM19S_WGS84_5m_raw.tif</p> <p> |+ DSM_Copahue_UTM19S_WGS84_5m_VoidFilled.tif</p> <p> |+ WB_mask_5m_UTM19S.tif</p> <p><strong>References</strong></p> <p>Beyer, R. A., Alexandrov, O., & McMichael, S. (2018). The Ames Stereo Pipeline: NASA's open source software for deriving and processing terrain data. <em>Earth and Space Science</em>, 5, 537– 548. <a href="https://doi.org/10.1029/2018EA000409">https://doi.org/10.1029/2018EA000409</a></p> <p>Collins, J., Riegler, G., Schrader, H., Tinz, M., 2015. Applying terrain and hydrological editing to TanDEM-X data to create a consumer-ready worlddem product. Int. Arch. Photogram. Rem. Sens. Spatial Inf. Sci. 40 (7), 1149. https://doi.org/10.5194/isprsarchives-XL-7-W3-1149-2015.</p> <p>Mueting, A., Bookhagen, B., & Strecker, M. R. (2021). Identification of debris-flow channels using high-resolution topographic data: A case study in the Quebrada del Toro, NW Argentina. <em>Journal of Geophysical Research: Earth Surface</em>, 126, e2021JF006330. <a href="https://doi.org/10.1029/2021JF006330">https://doi.org/10.1029/2021JF006330</a></p> <p>Viotto, S., Toyos, G., & Bookhagen, B. (2022). An assessment of the effects of DEM quality and spatial resolution on a model for mapping lahar hazard inundation at volcán copahue (Argentina & Chile). Journal of South American Earth Sciences, 104138. https://doi.org/10.1016/j.jsames.2022.104138</p> <p> </p> <p> </p>
Dataset for paper Pavel Perezhogin, Laure Zanna, Carlos Fernandez-Granda "Generative data-driven approaches for stochastic subgrid parameterizations in an idealized ocean model" submitted to JAMES.
<p>The dataset consists of the directory tree of .zarr archives. See <a href="https://github.com/m2lines/pyqg_generative/blob/master/Google-Colab/dataset.ipynb">Github repository</a> for the description of the dataset.</p> <p>The directory tree is:</p> <pre><code>├── eddy │ ├── 48 │ │ ├── gauss │ │ ├── hires-gauss │ │ ├── hires-sharp │ │ ├── lores │ │ └── sharp │ ├── 64 │ │ ├── gauss │ │ ├── hires-gauss │ │ ├── hires-sharp │ │ ├── lores │ │ └── sharp │ ├── 96 │ │ ├── gauss │ │ ├── hires-gauss │ │ ├── hires-sharp │ │ ├── lores │ │ └── sharp │ └── hires ├── jet │ ├── 48 │ │ ├── gauss │ │ ├── hires-gauss │ │ ├── hires-sharp │ │ ├── lores │ │ └── sharp │ ├── 64 │ │ ├── gauss │ │ ├── hires-gauss │ │ ├── hires-sharp │ │ ├── lores │ │ └── sharp │ ├── 96 │ │ ├── gauss │ │ ├── hires-gauss │ │ ├── hires-sharp │ │ ├── lores │ │ └── sharp │ └── hires</code></pre> <ul> <li>Every individual dataset is a <code>.zarr</code> <a href="https://zarr.readthedocs.io/en/stable/">archive</a></li> <li><code>eddy/jet</code> - configuration of the pyqg; eddy is default; See <a href="https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2022MS003258">Ross2022</a> for description</li> <li><code>hires.zarr</code> - high-resolution simulation at 256x256 grid</li> <li><code>48/64/96</code> - resolution of the coarse models</li> <li><code>lores.zarr</code> - low-resolution simulation</li> <li><code>gauss.zarr</code>, <code>sharp.zarr</code> - training datasets for prediction of subgrid forcing obtained with Gaussian or Sharp filters</li> <li><code>hires-gauss.zarr</code>, <code>hires-sharp.zarr</code> - high-resolution simulation projected onto coarse grid with Gaussian or Sharp filters</li> </ul> <p>The directory tree is split into small tar.gz files each representing a separate .zarr archive. Download any required parts of the dataset and unpack with:</p> <p><strong>tar -xf *.tar.gz </strong></p> <p><strong>The directory tree will be restored automatically!</strong></p>
Data Archive for "Latent diffusion models for generative precipitation nowcasting with accurate uncertainty quantification"
<p>This repository contains the training data and pretrained models for the paper "Latent diffusion models for generative precipitation nowcasting with accurate uncertainty quantification".</p> <p>To use the data, clone the repository at <a href="https://github.com/MeteoSwiss/ldcast">https://github.com/MeteoSwiss/ldcast</a>. Unzip the files as follows:</p> <ul> <li>Demo files "ldcast-demo-20210622.zip" to the "data" directory</li> <li>Training and evaluation data archive "ldcast-datasets.zip" to the "data" directory</li> <li>Pretrained model archive "models-genforecast.zip" to the "models" directory</li> </ul>
Finetuned Models for paper submitted to ISWC2023: "Entity Alias Generation for Entity Retrieval"
<p>We provide 2 checkpoints (based on BART and T5) for Entity Alias Generation, finetuned on the dataset found at https://zenodo.org/record/7928273</p>
Automated patent extraction powers generative modeling in focused chemical spaces: Training data and model checkpoints release
<p>Training data and model checkpoints accompanying paper on "Automated patent extraction powers generative modeling in focused chemical spaces". If you use this data, please cite the following manuscript:</p> <pre>@article{subramanian2023automated, title={Automated patent extraction powers generative modeling in focused chemical spaces}, author={Subramanian, Akshay and Greenman, Kevin P and Gervaix, Alexis and Yang, Tzuhsiung and G{\'o}mez-Bombarelli, Rafael}, journal={Digital Discovery}, year={2023}, publisher={Royal Society of Chemistry} }</pre>
No More In-Context Learning? Exploring Parameter-Efficient Fine-Tuning Techniques for Code Generation with Large Language Models
<p>Data and models part of the replication package of the ICSE 24 submission entitled "<em>No More In-Context Learning? Exploring Parameter-Efficient Fine-Tuning Techniques for Code Generation with Large Language Models</em>".</p>
Dataset for automated image-based generation of finite element models for masonry buildings
<p>This repository contains the dataset used for computing finite element models for masonry buildings via image-based approach. The method that uses this data set was presented in the paper "Automated image-based generation of finite element models for masonry buildings" by Pantoja-Rosero et., al. (2023)" https://doi.org/10.1007/s10518-023-01726-7</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.