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8,537 results for “Openness”
Video 5 - Open Science: why do we need data stewards.
<p><span>An interview on the need of data professionals and Open Science skills with York Sure-Vetter, Director of NFDI, Germany and Professor at Karlsruhe Institute of Technology; Jessica Lindvall, Head of Training at SciLifeLab Training Hub; Anne Sophie Fink, Head of Data Management at DeiC (Denmark); and Sally Chambers, Director at DARIAH-EU.</span></p> <p><span>Modern research and technology can require not only large amounts of data, but also good data quality. Ensuring good data quality requires specialized expertise. Data stewards and other data management professionals support researchers with providing and working with good quality data which are also FAIR. Open software, open infrastructures are also important bits in the Open Science puzzle, all of which require funding. The uptake of Open Science depends on widespread Open Science awareness and skills. These require outreach, training and formal education.</span></p>
Video 2 - Open Science to enable collaboration.
<p><span>Interview with Maria Bellantone, PhD in materials science; Bregt Saenen, Senior Policy Officer for Open Science at Science Europe; Pilar Rica Castro, Senior project officer for Open Access, Spanish Foundation for Science & Technology; and Iryna Kuchma, Open Access Programme Manager for EIFL on the importance of policies supporting Open Science infrastructures as a tool for implementing and promoting Open Science.</span></p> <p><span>Open Science fosters inter- and transdisciplinarity. This requires open data infrastructure and interoperability. Open Science policies can be a tool for changing how research is performed and assessed. The Spanish Foundation for Science and Technology funds such infrastructures at a local level. This provides digital infrastructures and expertise to make it possible to share interoperable data. This interoperability also makes it possible for infrastructures to collaborate. Funders have a responsibility to ensure that the research they fund makes an impact, and Open Science infrastructure increases the impact potential of research.</span></p>
Video 3 - Open Science: a better return on investment.
<p><span>An interview with Roberto Sabatino, Research Engagement Officer at HEAnet, Dublin Ireland; Nadia Tonello, Data Management Manager at the Barcelona Supercomputing Centre; and Eva Mendes, PhD in Library and Information Science on the potential of Open Science to enhance humanity’s ability to respond to crises and to provide a better return on investment.</span></p> <p><span>Science is increasingly collaborative, and this includes sharing data. Funding needs to include data management, sharing, and infrastructure. Increased interoperability in research can help humanity collaboratively face challenges such as climate change. The response to the Covid-19 pandemic was also facilitated by data sharing, showing the positive societal impact and net benefit of Open Science.</span></p>
Data for publication "Benefits of open access to researchers from lower-income countries: A global analysis of reference patterns in 1980–2020"
<p>Data to reproduce figures for the publication "Benefits of open access to researchers from lower-income countries: A global analysis of reference patterns in 1980–2020" (DOI: 10.1177/01655515241245952). Each file contains the data underlying the figure corresponding to the file name.</p>
BeauAMP : processing and consolidation of open data on public procurement in France (2015-2023)
<p>This accurate and comprehensive dataset encapsulates the main information published on the BOAMP website (the official journal for public procurement notices in France) from 2015 to 2023, enriched with the individual characteristics of contracting authorities and holders of public contracts. After converting the notices into a processed table, we use a machine learning algorithm to estimate the SIRETs (i.e. national identifiers) of the contracting parties, so that we can merge the open data on public procurement with individual information on public and private agents (size, legal status, main activity, geolocation...). Finally, we estimate the geolocation of foreign firms. The dataset contains about 300,000 public contracts and describes more than 1,000,000 interactions between approximately 16,000 public entities and 130,000 companies. It covers over 100 variables on the contract features, the outcome of the award procedure, the characteristics of contracting authorities and the characteristics of awarded firms.</p> <p> </p> <p>See similar data from 2024 : https://zenodo.org/records/17187786</p>
Patristisches Textarchiv. Ein Open Access-Archiv antiker christlicher Texte
The "Patristic Text Archive" offers anyone interested a collection of texts and translations of Christian texts from antiquity (i.e. "Patristic" is conceived in a very broad sense).
Open data repository, Knab et al., Prediction of stroke outcome in mice based on non-invasive MRI and behavioral testing
<p><strong>Open data repository, Knab et al., Prediction of stroke outcome in mice based on non-invasive MRI and behavioral testing</strong></p> <p><strong>Latest version of files: repository_v2.0.zip, Behavior Data_v2.0.xlsx and MRI IDs Testing&Replication Cohort.xlsx (please ignore repository.zip)</strong></p> <p>Open data repository Knab et al. Prediction of stroke outcome in mice based on non-invasvive MRI and behavioral testing</p> <p>Open code and documentation of prediction models available via <a href="https://github.com/major-s/mouse-mcao-outcome-predictor">https://github.com/major-s/mouse-mcao-outcome-predictor</a></p> <p><strong>Content:</strong></p> <p>README.txt</p> <p>This information</p> <p><strong>dat</strong></p> <p>Contains MRI data in NIFTI format and secondary data from atlas registration. For documentation of atlas registration files see https://pubmed.ncbi.nlm.nih.gov/28829217/<br>Files used for the manuscript:<br>t2.nii: t2 weighted image acquired 24 h post stroke<br>masklesion.nii: manually delineated lesion<br>x_masklesion.nii: lesion in atlas space<br>ix_ANO.nii: Allen brain atlas in native space (i.e. matching t2.nii)<br>Lesion volume was calculated by volume of voxels unequal 0 in x_masklesion.nii<br>Overlap of regions defined by ix_ANO.nii with masklesion.nii were used for calculating percent damage in each atlas region</p> <p><strong>prediction_models</strong></p> <p>Contains separated training and test data as xlsx and csv files with lesion volumes in cubic mm of the Allen brain atlas space, percent damage per atlas region and behavioral data. The training data was used as input for training prediction models in MATLAB, the results were created using the test data.<br>The files have following sturcture:<br>Column 1: animal ID<br>Columns 2-537: MRI regions (column title corresponds to the region number as used in the Allen common coordinate framework)<br>Column 538: lesion volume<br>Column 539: initial performance (subacute deficit) = mean performance/deficit on days 2-6<br>Column 540: mean performance/deficit on days 2-6 = initial performance (subacute deficit) - this column equals column 539 but has different header which was used to train the residual from initial deficit<br>Column 541: residual performance/deficit<br>Column 542: test or training group<br>Consecutive rows contain data for each animal specified by the animal id</p> <p>The repository also contains all trained models, prediction results for the test data and tables with resulting median absolute error (MedAE) and 5th, 25th, 75th and 95 absolute error quantiles for each model.<br>The model files end with '_models.mat' and contain 50 independently trained models each. Each model version is specified by number 1-50.<br>The result files end with '_test_results.mat' or '_test_results.xlsx', files with MedAE and quantiles end with '_test_errors.xlsx' or '_test_errors.csv. The common part of filenames specifies the used paradigm<br>Folder 'subacute deficit prediction' contains:<br> - initial_performance_from_lesion_volume: prediction of subacute deficit using lesion volume<br> - initial_performance_from_segmented_mri: prediction of subacute deficit using segmented mri<br>Folder 'long-term outcome prediction' contains:<br> - lesion_volume: prediction of residual deficit using lesion volume<br> - segmented_mri: prediction of residual deficit using segmented_mri<br> - initial_performance: prediction of residual deficit using subacute deficit<br>Folder 'mri_inc_oob_imp' contains models trained using increasing number of mri segments sorted according to the out-of-bag importance. The number of used segments is given in the file name. The models, results and errors are separated in subfolders.</p> <p>Files with equal file name and different extension always contain the same data</p> <p><strong>templates</strong><br>Allen atlas, template, brain mask, hemisphere masks, tissue probability masks in NIFTI format including annotations of region IDs and parameter.m file for use in MATLAB toolbox ANTx2<br> </p>
Dataset for Earth Sciences at Freie Universität Berlin: Open Access, Licenses and Persistent Identifiers Monitoring
<p>In <em>Version 4</em>, <strong>publishers </strong>and <strong>journals</strong> names has been extended.</p> <p>In <em>Version 3</em>, new entries have been added for both <strong>journal </strong>and <strong>non-journal article outputs</strong>, specifically including data from the year <strong>2023</strong>. Minor adjustments were also made to URLs and open access (OA) statuses.</p> <p><em>Note</em>: Data for journal and non-journal article outputs from the year 2023 were unavailable at the time of preparing the <strong>short paper</strong> presenting the results, findable under <a href="https://doi.org/10.5281/zenodo.14170751" target="_blank" rel="noopener">10.5281/zenodo.14170751</a> [1]).</p> <p><br>Started in 2021, Berlin University Alliance (BUA) Open Science Dashboards, followed by the BUA Open Science Magnifiers projects, seek to investigate Open Science (OS) practices across different research domains and communities. A primary focus of these initiatives lies in the development of OS indicators, tailored to discipline specific ones, alongside their visualisation for monitoring.</p> <p>Collaborating closely with the Department of Earth Sciences at Freie Universität Berlin (FU), one of the project's key objectives is the implementation of an Open Science Dashboard for Earth Sciences FU. The visualisation of the first OS metrics is already available under <a href="https://quest-open-earthsciences.charite.de/">https://quest-open-earthsciences.charite.de/</a>.</p> <p>The datasets utilized include the outputs from the Department of Earth Sciences at FU, i.a. on Open Access (OA) categorisations and statuses, persistent identifiers (PIDs) and Open Licences (Creative Commons) availability, published between 2016-2023. These datasets consist of (i) <strong>"journal_articles_v3.csv"</strong> and (ii) <strong>"non_journal_articles_outputs_v3.csv"</strong>, the latter including “book”, “book chapter”, “conference paper”, “conference abstract”, and “other research outputs” (e.g. book reviews, project reports, book chapters in school books, or electronic supplementary material).</p> <p>Data for the dashboard was obtained from the FU university bibliography (<a href="https://frub-berlin.primo.exlibrisgroup.com/">https://frub-berlin.primo.exlibrisgroup.com/</a>), but coverage of PID information was incomplete, OA category information was incomplete and often erroneous, and copyright/open licence information was missing in this data set. Therefore, the data set was <strong>enriched with manually researched information</strong>. Data enrichment was different for journal articles and for non-journal-article publications. For <strong><em>journal articles</em></strong>, <em>copyright/open licence</em> information was added, and <em>open access category</em> information was checked and added or corrected. For <strong><em>non-journal-article outputs</em></strong>, missing <em>PIDs</em> were added and <em>open access category</em> information was checked and added or corrected. </p> <p>The "<em>data_dictionary_earth_sciences_v3.csv"</em> table documents all variables of each data file containing here.</p> <p>Both for the dashboard, and in our following publications, we categorized <strong>"bronze"</strong> OA outputs as closed access. Although such publications are openly available on the publisher's websites, they lack licence information and thus cannot be openly reused, and presumably even change its openness status at any time. Following the methodology of Charité Dashboard on Responsible Research (<a href="https://quest-dashboard.charite.de/#tabStart">https://quest-dashboard.charite.de/#tabStart</a>) we only include "gold", "hybrid" and "green" OA as true OA. Further details about the enrichment process conducted on these datasets can be found under <a href="https://doi.org/10.5281/zenodo.1099821" target="_blank" rel="noopener">10.5281/zenodo.1099821</a>9 [2]</p> <p> </p> <p>[1] Duine, M., Iarkaeva, A., & Hübner, A. (2024, November 15). Initiating discipline-specific Open Science Monitoring with the Open Science Dashboard for Earth Sciences. 28th International Conference on Science, Technology and Innovation Indicators (STI2024), Berlin, Germany. <a href="https://doi.org/10.5281/zenodo.14170751" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.14170751</a><br>[2] Duine, M., Hübner, A., & Iarkaeva, A. (2024). Enrichment of university bibliography data for open science monitoring. Zenodo. <a href="https://doi.org/10.5281/zenodo.10998219">https://doi.org/10.5281/zenodo.10998219</a></p>
Local Geohistory Project: Open Data
<p>The Local Geohistory Project aims to educate users and disseminate information concerning the geographic history and structure of political subdivisions and local government. This repository contains the data used to populate the <a href="https://www.localgeohistory.pro/en/">project website</a>. The tab-separated values (TSV) files containing the data are available in the <strong>data</strong> folder, and metadata is available in the <strong>metadata</strong> folder.</p> <p>Currently, the open dataset only contains information related to New Jersey and Pennsylvania, with several scattered events concerning neighboring jurisdictions, mostly that currently border either state.</p> <p>This repository does not contain the application code, which can be found in the <a href="https://github.com/localgeohistoryproject/application">Application repository</a>, nor does it contain the table data for the bundled <strong>calendar</strong> extension.</p>
SARS-CoV-2 wastewater surveillance data and metadata in the Open Data Model format. Part 1: Québec City
<p>SARS-CoV-2 wastewater surveillance data and metadata in the Open Data Model format. Part 1: Québec City Authors</p> <ul> <li>Therrien, J-D<sup>1</sup></li> <li>Maere, T.<sup>1</sup></li> <li>Sanchez-Quete, F.<sup>2</sup></li> <li>Tsitouras, A.<sup>2</sup></li> <li>Goitom, E.<sup>3</sup></li> <li>Cloutier, F.<sup>4</sup></li> <li>Dufour, D.<sup>4</sup></li> <li>Proulx, F. <sup>4</sup></li> <li>Nicolaï, N.<sup>1</sup></li> <li>Philippe, R.<sup>1</sup></li> <li>Tohidi, M.<sup>1</sup></li> <li>Dorner, S.<sup>3</sup></li> <li>Frigon, D.<sup>2</sup></li> <li>Vanrolleghem, P.A.<sup>1</sup></li> </ul> <p>Affiliations</p> <ul> <li><sup>1</sup> model<em>EAU</em>, Département de génie civil et de génie des eaux, Université Laval</li> <li><sup>2</sup> Microbial Community Engineering Lab (MiCEL), Department of Civil Engineering, McGill University</li> <li><sup>3</sup> Polytechnique Montréal</li> <li><sup>4</sup> Ville de Québec</li> </ul> <p>General Remarks</p> <p>Wastewater-based surveillance of SARS-CoV-2 virus can detect between 1 and 30 infected individuals per 100,000 (including asymptomatic ones) by analyzing the population's sewage. As such, this method is very attractive since it costs only a fraction of clinical testing (as low as 1%). Human faeces may contain the virus a few days before a person becomes ill. Thus, this approach allows for detection of outbreaks 2-7 days before the increase in reported cases stemming from clinical screening tests (Bibby et al., 2021). Wastewater-based surveillance complements clinical testing by geolocating outbreaks, which may help targeting intensive screening programs. Moreover, it provides a quick indication of whether new public health measures (e.g., masks, social distancing, confinement, and curfew) are effective.</p> <p>Sampling</p> <p>The reported dataset contains open data collected in the province of Québec as part of the SARS-CoV-2 wastewater-based surveillance program <a href="https://www.centreau.ulaval.ca/en/covid/">CentrEau</a>-COVID. Four of the largest cities in the province (Montréal, Laval, Québec City, and Trois-Rivières), as well as the municipalities of four rural regions (Mauricie, Centre-du-Québec, Bas-St-Laurent, and Gaspésie) participated in the program. The entire dataset includes 31 sampling sites covering approximately half the population of the province of Québec (population size of 8.5 million). The timeframe covered by the dataset varies for each site. The earliest surveillance program was launched in March 2020, others followed soon after. Samples were collected using various methods, such as 24h composite samples, grab samples, and passive sampling using variations on the Moore swab method (Schang et al., 2020)</p> <p>Analysis</p> <p>Prior to the analysis of the samples for SARS-CoV-2, physiochemical parameters such as total suspended solids (TSS), turbidity, conductivity, ammonium concentration, and pH were measured. The samples were subsequently concentred by filtration using a MEC filter (0.45 um), followed by total RNA extraction using the Qiagen AllPrep PowerViral DNA/RNA Kit (Qiagen, USA) with some modifications (beta-mercaptoethanol concentration raised to 10% and lysis performed at 55 °C for 30 minutes) (Ahmed et al., 2020). SARS-CoV-2 viral RNA was detected by a one-step RT-qPCR. To assess the RNA recovery rate of the procedure, samples were spiked before extraction with a known concentration of Bovine Respiratory Syncytial Virus (BRSV) using the Zoetis INFORCE 3 vaccine (Zoetis, USA). In addition to SARS-CoV-2, samples were assessed for Pepper Mild Mottle Virus (PMMoV), the daily load of which is hypothesized to represent the fecal load contributions to the samples at a given site and time. PCR conditions and primer used to collect viral data are described in the files <code>primers.md</code> and <code>PCR conditions.md</code>.</p> <p>Compilation</p> <p>The measurements on wastewater samples carried out by the participating laboratories of this study are found in the <code>WWMeasure</code> table. The values provided by municipalities come from laboratories accredited by the Centre d'expertise en analyse environnementale du Québec (CEAEQ), in compliance with the latter's quality assurance protocols. The COVID-19-related public health data found in the <code>CPHD</code> table were collected from the Institut National de Santé Publique du Québec (INSPQ)'s public reports. Wastewater data taken in-situ at the sampling sites (e.g., the flow at pumping stations or water resource recovery facilities (WRRFs)) are found in the <code>SiteMeasure</code> table and were taken by the institutions responsible for managing the sites. All of the data, stemming from multiple sources, were combined into the <a href="https://github.com/Big-Life-Lab/ODM">Open Data Model (ODM)</a> standard format using the <a href="https://github.com/modelEAU/ODM-Import">ODM-Import python package</a> (see also Structure).</p> <p>Validation</p> <p>Wastewater and sample data were manually assessed for quality by our research collaborators. Data points for which the quality appeared to be uncertain were tagged with the value <code>True</code> in the <code>qualityFlag</code> column. Conversely, data deemed of good quality have a quality flag of <code>False</code>. Data that were not checked have a quality flag of <code>NA</code>. Textual comments describing the issues with the data points in more detail are also included in the dataset using the <code>notes</code> column of the relevant tables. Note that data validation was carried out by the data custodians responsible for each city in the dataset according to available resources. As the project continues and data validation is undertaken on more sections of the dataset, data may be re-analyzed, flagged, or commented as needed. Revisions to the dataset will be reported to the best of our ability.</p> <p>Structure</p> <p>The data contained in this dataset has been structured according to the <a href="https://github.com/Big-Life-Lab/ODM">Open Data Model (ODM) for Wastewater-Based Surveillance</a>. This model provides a standardized dictionary to collect and share data and metadata stemming from wastewater-based surveillance programs. By convention, it splits all data into 10+ thematic tables with each record representing a unique measurement, i.e., long format. For convenience, the <code>wide</code> folder presents the data found in all the other tables in a wide format, i.e., multiple measurements are aligned by <code>timestamp</code>, with each column representing a different parameter.</p> <p>Acknowledgements</p> <p>The authors would like to acknowledge that this dataset was collected thanks to the financial support of the Fonds de Recherche du Québec, the Molson Foundation, the Trottier Family Foundation, CentrEau and NSERC. The authors would also like to acknowledge the efforts of Douglas Manuel (Ottawa Hospital) and Howard Swerdfeger (Public Health Agency of Canada) for their original idea for the Open Data Model and continued development.</p> <p>References</p> <ol> <li> <p>Ahmed, W., Bertsch, P.M., Bivins, A., Bibby, K., Farkas, K., Gathercole, A., Haramoto, E., Gyawali, P., Korajkic, A., McMinn, B.R., Mueller, J.F., Simpson, S.L., Smith, W.J.M., Symonds, E.M., Thomas, K. v., Verhagen, R., Kitajima, M., 2020. Comparison of virus concentration methods for the RT-qPCR-based recovery of murine hepatitis virus, a surrogate for SARS-CoV-2 from untreated wastewater. Science of the Total Environment 739. <a href="https://doi.org/10.1016/j.scitotenv.2020.139960">https://doi.org/10.1016/j.scitotenv.2020.139960</a></p> </li> <li> <p>Bibby, K., Bivins, A., Wu, Z., North, D., 2021. Making waves: Plausible lead time for wastewater based epidemiology as an early warning system for COVID-19. Water Research 202, 117438. <a href="https://doi.org/10.1016/j.watres.2021.117438">https://doi.org/10.1016/j.watres.2021.117438</a></p> </li> <li> <p>Schang, C., Crosbie, N., Nolan, M., Poon, R., Wang, M., Jex, A., Scales, P., Schmidt, J., Thorley, B.R., Henry, R., Kolotelo, P., Langeveld, J., Schilperoort, R., Shi, B., Einsiedel, S., Thomas, M., Black, J., Wilson, S., McCarthy, D.T., 2020. Passive sampling of viruses for wastewater-based epidemiology: a case-study of SARS-CoV-2 [WWW Document]. URL <a href="https://www.researchgate.net/publication/347103410\_Passive\_sampling\_of\_viruses\_for\_wastewater-based\_epidemiology\_a\_case-study\_of\_SARS-CoV-2?channel=doi&linkId=5fd800f392851c13fe892393&showFulltext=true">https://www.researchgate.net/publication/347103410\_Passive\_sampling\_of\_viruses\_for\_wastewater-based\_epidemiology\_a\_case-study\_of\_SARS-CoV-2?channel=doi&linkId=5fd800f392851c13fe892393&showFulltext=true</a> (accessed 1.18.21).</p> </li> </ol>
Scan4CFU: Low-cost, open-source bacterial colony tracking over large areas and extended incubation times
<p>A hallmark of bacterial populations cultured <em>in vitro</em> is their homogeneity of growth, where the majority of cells display identical growth rate, cell size and content. Recent insights, however, have revealed that even cells growing in exponential growth phase can be heterogeneous with respect to variables typically used to measure cell growth. Bacterial heterogeneity has important implications for how bacteria respond to environmental stresses, such as antibiotics. The phenomenon of antimicrobial persistence, for example, has been linked to a small subpopulation of cells that have entered into a state of dormancy where antibiotics are no longer effective. While methods have been developed for identifying individual non-growing cells in bacterial cultures, there has been less attention paid to how these cells may influence growth in colonies on a solid surface. In response, we have developed a low-cost, open-source platform to perform automated image capture and image analysis of bacterial colony growth on multiple nutrient agar plates simultaneously. The descriptions of the hardware and software are included, along with details about the temperature-controlled growth chamber, high-resolution scanner, and graphical interface to extract and plot the colony lag time and growth kinetics. Experiments were conducted using a wild type strain of <em>Escherichia coli </em>K12 to demonstrate the feasibility and operation of our setup. By automated tracking of bacterial growth kinetics in colonies, the system holds the potential to reveal new insights into understanding the impact of microbial heterogeneity on antibiotic resistance and persistence. </p>
The open D1NAMO dataset: A multi-modal dataset for research on non-invasive type 1 diabetes management
<p>The description of the dataset is available at <a href="https://doi.org/10.1016/j.imu.2018.09.003">https://doi.org/10.1016/j.imu.2018.09.003</a></p> <p>The usage of wearable devices has gained popularity in the latest years, especially for health-care and well being. Recently there has been an increasing interest in using these devices to improve the management of chronic diseases such as diabetes. The quality of data acquired through <a href="https://www.sciencedirect.com/topics/medicine-and-dentistry/wearable-sensor">wearable sensors</a> is generally lower than what medical-grade devices provide, and existing datasets have mainly been acquired in highly controlled clinical conditions. In the context of the <em>D1NAMO</em> project — aiming to detect <a href="https://www.sciencedirect.com/topics/medicine-and-dentistry/glycemic">glycemic</a> events through non-invasive <a href="https://www.sciencedirect.com/topics/medicine-and-dentistry/ecg-abnormality">ECG pattern</a> analysis — we elaborated a dataset that can be used to help developing health-care systems based on wearable devices in non-clinical conditions. This paper describes this dataset, which was acquired on 20 healthy subjects and 9 patients with type-1 diabetes. The acquisition has been made in real-life conditions with the <em>Zephyr BioHarness 3</em> wearable device. The dataset consists of <em>ECG</em>, <em>breathing</em>, and <em><a href="https://www.sciencedirect.com/topics/medicine-and-dentistry/accelerometer">accelerometer</a></em> signals, as well as <em>glucose</em> measurements and annotated <em>food pictures</em>. We open this dataset to the scientific community in order to allow the development and evaluation of diabetes management algorithms.</p>
Fatiando a Terra data v1.0.0: A curated collection of open geophysics data for tutorials and documentation
<p>This repository holds curated sample datasets that can be used in the documentation and tutorials of the <a href="https://www.fatiando.org/">Fatiando a Terra</a> project. All datasets are cleaned and formatted versions of openly available data under permissive licenses or in the public domain.</p> <p>More information about datasets and the code for cleaning, formatting, and preprocessing the data can be found at: <a href="https://github.com/fatiando/data">https://github.com/fatiando/data</a></p> <p>See the README.md file for information on data sources and their original licenses.</p> <p><strong>NOTE:</strong> This collection uses <a href="https://semver.org/">semantic versioning</a> (i.e., MAJOR.MINOR.BUGFIX). Major releases mean that backwards incompatible changes were made to the data. Minor releases add new data without changing existing files. Bug fix releases fix errors in a previous release that makes the data unusable. Changes to the current data files will always be published as a major release unless the file(s) in the previous release was unusable/corrupted.</p>
Linked Open African Red Slip Ware
<ul> <li>first release after project ending</li> </ul> <p>Characteristic of the North African bowls, plates, and jugs are their pictorial decorations applied mainly by appliqués and stamps. As mass-produced image carriers and everyday objects, the ARS spread throughout the empire.</p> <p>The range of motifs includes mythological scenes as well as scenes from the Old and New Testament, circus, arena and hunting scenes as well as fish and plant motifs. The appliqués-decorated pottery thus provides insights into Late Antique imagination and its changes, as well as into the economic history of the period between the 3rd and 5th centuries AD in North Africa.</p> <p>Previous documentation methods were not able to capture the objects and their decoration in an adequate way. The digital recording of the RGZM's collections by 3D scans allows to compare potentially identical appliqués and to assign them to their negative forms and the corresponding stamps.</p> <p>Whereas vessel curvature previously falsified the assignment of appliqués and models, 3D analysis and visualisation tools now allow a comparison . Metadata created for each object increases the effectiveness and accuracy of determining image context and content. Issues related to the production of the ARS and the process flows within the workshops can be investigated through the analysis of the 3D data.</p> <p>The developed ontology uses CIDOC CRM and various extensions. The data mainly consists of objects (E24), on which e.g. applications (features, E25) can be found. These objects can be described semantically, e.g. by the shape or time epoch. Features are described with observations, e.g. a human type man standing and wearing a beard. These observations lead to interpretations whose arguments can be observations.</p>
Fachinformationsdienst (FID) BAUdigital: Ergebnisse der Umfrage zu Open Access und Forschungsdaten 2021
<p>Die im Rahmen des Fachinformationsdienstes BAUdigital durchgeführte Umfrage (Laufzeit: 08. März - 30. April 2021) hatte das Ziel, die Publikationskulturen der adressierten Disziplinen zu ermitteln und bedarfsorientiert zu erheben, welche Dienstleistungen und Informationsangebote für die Fachcommunity wichtig sind. Die Umfrage richtete sich daher vorrangig an Forschende der Fachdisziplinen Bauingenieurwesen, Architektur und Urbanistik, aber auch an Fachvertreter*innen aus Lehre und Wirtschaft. </p> <p>Für die Erhebung der Daten wurde LimeSurvey verwendet, die Beantwortung des Fragebogens dauerte durchschnittlich 15 Minuten und erfolgte anonym.</p> <p>Der DFG-geförderte Fachinformationsdienst BAUdigital ist ein Verbundprojekt der Universitätsbibliothek Braunschweig, der Universitäts- und Landesbibliothek Darmstadt, der TIB – Leibniz-Informationszentrum Technik und Naturwissenschaften und dem Fraunhofer-Informationszentrum Raum und Bau.</p>
Global Environmental and Weather data for PyPSA-Earth: An Open Optimisation Model of the Earth Energy System.
<p><strong>PyPSA-Earth </strong>is an open model dataset of the global power system at different network levels that cover our Earth. The African model can be built using the code provided at <a href="https://github.com/pypsa-meets-africa/pypsa-africa">https://github.com/pypsa-meets-africa/pypsa-africa</a>. Other regions follow soon under the same code base.</p> <p>Since the GitHub codebase is not suited for handling large changing files, we provide here separate <strong>data bundles and cutouts</strong> to be downloaded and extracted as noted in the <a href="https://pypsa-meets-africa.readthedocs.io/en/latest/index.html">documentation</a></p> <p>The below-provided <strong>cutouts </strong>are spatiotemporal subsets of the Earth weather data from the <a href="https://software.ecmwf.int/wiki/display/CKB/ERA5+data+documentation">ECMWF ERA5</a> reanalysis dataset and the <a href="https://wui.cmsaf.eu/safira/action/viewDoiDetails?acronym=SARAH_V002">CMSAF SARAH-2</a> solar surface radiation dataset for the <strong>year 2013</strong>. They have been prepared by and are for use with the <a href="https://github.com/PyPSA/atlite">atlite</a> tool (<a href="https://atlite.readthedocs.io/">https://atlite.readthedocs.io/</a>). They can be reproduced or extended for other weather years (approx. 40-50 years) around the world by using the <a href="https://github.com/pypsa-meets-africa/pypsa-africa/blob/main/scripts/build_cutout.py">build.cutout.py</a></p> <p><strong>ECMWF ERA5</strong></p> <ul> <li><strong>Source: </strong><a href="https://cds.climate.copernicus.eu/cdsapp#!/dataset/reanalysis-era5-single-levels?tab=overview">https://cds.climate.copernicus.eu/cdsapp#!/dataset/reanalysis-era5-single-levels?tab=overview</a></li> <li><strong>Terms of Use: </strong><a href="https://cds.climate.copernicus.eu/api/v2/terms/static/20180314_Copernicus_License_V1.1.pdf">https://cds.climate.copernicus.eu/api/v2/terms/static/20180314_Copernicus_License_V1.1.pdf</a></li> </ul>
Demo showing what RELIANCE project has achieved on Open Science, FAIR and EOSC
<p>This demo shows what we have achieved on Open Science and FAIR. </p> <p> </p> <p>- Starting from <a href="https://beta.explore.openaire.eu/">OpenAIRE EXPLORE</a>, we search for "Copernicus air quality" and find lots of resources, mostly publications and only 2 software. The reason is that to be "classified" as "Software", we have to add specific metadata when publishing.</p> <p>- The "Software" we found is a "EOSC Jupyter notebook" created by <a href="https://orcid.org/0000-0003-3979-3645">Simone Mantovani</a> with a DOI and additional metadata so that OpenAIRE explore can "associate" it to a specific EOSC service, namely <a href="https://www.egi.eu/services/notebooks/">EGI Notebook</a>. </p> <p>- When we click on "<a href="https://marketplace.eosc-portal.eu/services/egi-notebooks?q=EGI+Notebook">EOSC Service: EGI Notebook</a>", we are re-directed directly to the service that has been used to generate the original scientific results we found in OpenAIRE explore.</p> <p>- Any EOSC service needs to be requested and you have to plave an "order" to get access to it, where you may have to explain why you would like to access this EOSC service. To authenticate to any EOSC service, you can use for instance your <a href="https://orcid.org/">ORCID </a>identifier. if you do not have one, we suggest to register: this is very handy for EOSC services and you keep your ORCID identifier when you move from one institution to another (in addition, your institutional login may not work).</p> <p>- You will get notified by email (check your SPAM folder!) when you got access to an EOSC service.</p> <p>- We login to EGI notebook using ORCID identifier and upload (manually) the jupyter notebook we found in OpenAIRE (following the link e.g. from zenodo (<a href="https://doi.org/10.5281/zenodo.5554786">https://doi.org/10.5281/zenodo.5554786</a>)</p> <p>- The Jupyter notebook uses CAMS European air quality analysis from Copernicus Atmosphere Monitoring Service. The input data is accessible through an external service called the <a href="https://reliance.adamplatform.eu/">ADAM platform</a> (Advanced geospatial Data Management platform). It hosts datacubes (easy and fast access to large amount of data).</p> <p>- We can re-execute the Jupyter notebook but more importatnly we can create derivative work. However, make sure you check the license of the original result you find in OpenAIRE explore: it needs to have a license that allows you to create derivative work. Also make sure the Jupyter notebook is well documented.</p> <p>- We duplicate the Jupyter notebook and customize it. To bring the Open Science aspect from the beginning and not only when publishing the Jupyter Notebook, we need to use storage that can be shared. We use another service called "<a href="https://www.egi.eu/services/datahub/">EGI datahub</a>".</p> <p>- As when collaboratively writing scientific papers, we agree on how to organize the data: we create an "input folder" (containing all the input datasets used in the Jupyter notebook), an "output" folder with all the outputs we generate and a tool folder with the Jupyter notebook.</p> <p>- The new analysis is very similar to the previous one but over a different geographical area (France). </p> <p>- Finally, we create a Research Object that aggrgate all the resources. We use another external service called <a href="https://reliance.rohub.org/">RoHub </a> (Research Object Hub) and create and "executable Research Object" which we hope will be found, accessed and reused!</p> <p> </p>
DIAMOND project Open Datasets
<p>The folder includes the datasets collected through the H2020 DIAMOND project titled ‘Revealing fair and actionable knowledge from data to support women’s inclusion in transport systems.’ (Grant Agreement No 824326), focusing on each Use Case of the project:</p> <ul> <li>Use Case I: Public Transport Infrastructures (Railways);</li> <li>Use Case II: (Emotion in) Autonomous Passenger Car;</li> <li>Use Case III: Vehicle (Bike) Sharing Fleet Management;</li> <li>Use Case IV: Employment of Women in Rail Industry and Freight/CSR Protocols.</li> </ul> <p>Data collection campaigns have been based on the methodological approach of the DIAMOND project. </p> <p>This relies on the Fairness Characteristics (FCs) identified through Thematic Analysis and on a series of interdisciplinary tools and methods. </p> <p>The heterogeneous and disaggregated datasets gathered through the executed data collection campaigns are classified in following categories:</p> <ul> <li>Structured data (Use Cases I, III and IV);</li> <li>Observations (Use Cases I and III);</li> <li>UESI questionnaires (all Use Cases);</li> <li>Social media data (Use Cases I, II and III);</li> <li>DAD survey questionnaires (all Use Cases);</li> <li>Recommendations (All Use Cases);</li> <li>Validation of the Toolkit4Fairness (All Use cases).</li> </ul> <p>The folder includes the document 'Deliverable 4.1 Datasets description', which is aimed at reporting the datasets collected for the H2020 DIAMOND project including information about the identification of dataset sources, data collection tools, data collection timeline and responsible partners of the Consortium for each data collection activity.</p>
Open database to support forensic investigation of disasters in South East Asia: FORINSEA v1.0
<p>Forensic investigation of disasters (FORIN) is a conceptual framework and research guide that focuses on the investigation of root causes of disaster risk and occurrence. Underlying the FORIN conceptual framework is the understanding that historical processes, operating asynchronously at different spatial and temporal scales, configure the specific circumstances in which disasters occur. An objective of FORIN research is to accumulate lessons and experience in a systematic way that can lead to improved choices in the future. FORINSEA aims to support this objective by providing an open database suitable to FORIN enquiries in South East Asia region. FORINSEA1.0 provides a comprehensive and coherent historical record of disasters, from 1945 until 2020, socio-economic policies and development of key infrastructure at the hydrological catchments of the Red River Delta in Vietnam and the Marikina river basin in the Philippines. The FORINSEA1.0 dataset allows researchers, for the first time, to explore and make use of geocoded data on major disasters affecting the two large and rapidly expanding cities of Hanoi and Metro Manila and their catchment areas.</p>
State of open science practices in France _ Dataset
<p>L’enquête State of Open Science Practices in France (SOSP-FR) a été conduite entre juin 2020 et septembre 2020. Elle a pour but d’interroger les pratiques des outils numériques et autour des données de la recherche dans les communautés scientifiques françaises. Le questionnaire se compose de 38 questions réparties en 9 thématiques. Les questions portent sur des pratiques déjà établies et des pratiques ou usages émergents comme l’<em>open peer review </em>ou les articles de données dits <em>data papers</em>. Le nombre de répondants est de 1 089, permettant d’interroger une répartition disciplinaire, genrée et statutaire assez représentative de l’état de l’emploi dans l’enseignement supérieur et de recherche en France.</p> <p>Les données ont été recueillies en 2020 via le logiciel Sphinx, mis à disposition par la TGIR Huma-Num.</p> <p>Le fichier SOSP_metadonnées_variables liste les variables avec les questions et les modalités associées. Il précise le traitement des données.</p> <p>Cette recherche a été financée par le Comité pour la science ouverte: <a href="https://www.ouvrirlascience.fr/sosp_-state-of-open-science-practices-in-france/">https://www.ouvrirlascience.fr/sosp_-state-of-open-science-practices-in-france/</a></p> <p>The State of Open Science Practices in France (SOSP-FR) survey was carried out between June 2020 and September 2020. It aims to question the practices of digital tools and about research data in French scientific communities. The questionnaire consists of 38 questions divided into 9 themes. The questions concern practices already fixed and those emerging uses such as open peer review or data papers. The number of respondents was 1089, making possible a fairly representative disciplinary, gender and status analyse of the state of employment in higher education and research in France.</p> <p>The data were collected in 2020 using the Sphinx software, provided by the TGIR Huma-Num.</p> <p>The SOSP_metadonnées_variables.csv file lists the variables with the associated questions and modalities.</p> <p>This research was funded by the Open Science Committee: <a href="http://The data were collected in 2020 using the Sphinx software, provided by the TGIR Huma-Num. The readme.csv file lists the variables with the associated questions and modalities. This research was funded by the Open Science Committee: https://www.ouvrirlascience.fr/sosp_-state-of-open-science-practices-in-france/">https://www.ouvrirlascience.fr/sosp_-state-of-open-science-practices-in-france/</a></p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.