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773 results for “Orchid”
Data from: Pollinator-mediated isolation promotes coexistence of closely related food-deceptive orchids
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Data from: Selection for predation, not female fecundity, explains sexual size dimorphism in the orchid mantises
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Data for: Evolution and diversity of the orchid genus Dendrobium
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Data from: Orchidinae-205: A new genome-wide custom bait set for studying the evolution, systematics, and trade of terrestrial orchids
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Data from: Phylogenomic analysis of target enrichment and transcriptome data uncovers rapid radiation and extensive hybridization in slipper orchid genus Cypripedium L.
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The relative role of climate and biotic interactions in shaping the range limits of a neotropical orchid
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Hubbard Brook Experimental Forest: Orchid Demography
This data set consists of two tables. The first table contains life demography stages for two round-leaved orchid taxa, Platanthera macrophylla and P. orbiculata, over the years 2011-2015. The second tables contains leaf area measures by orchid and life stage. Data have been published in: Cleavitt, NL.; Berry, EJ, Hautaniemi, J, and Fahey, TJ. 2017. Life stages, demographic rates, and leaf damage for the round-leaved orchids, Platanthera orbiculata (Pursh.) Lindley and P. macrophylla (Goldie) PM Brown in a northern hardwood forest in New Hampshire, USA. Botany 95 (1): 61-71. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Distribution. Lowlands of Taiwan and Orchid I. A recent record from Guizhou on mainland China was identified only on the basis of morphology and is here regarded as dubious; this specimen needs to be examined further. in Rhinolophidae
Distribution. Lowlands of Taiwan and Orchid I. A recent record from Guizhou on mainland China was identified only on the basis of morphology and is here regarded as dubious; this specimen needs to be examined further.
Data from: Pollination and fruit set in two rewardless slipper orchids and their hybrids (Cypripedium, Orchidaceae): large yellow flowers outperform small white flowers in the northern tall grass prairie
• Species with rewardless flowers often have low fruit to flower ratios, although wide temporal and spatial variation in fruiting success can occur. We compared floral phenotypes, insect visitors, and fruiting success in four populations of the small white (Cypripedium candidum) and yellow lady's slipper orchids (C. parviflorum) and their hybrids near the northern extent of North America's tall grass prairie. • Flower and fruit numbers were observed for two seasons on marked individuals (n = 1811). Floral traits were measured on 82-140 individuals per taxon, and analyzed in relation to fruiting success. All insects found inside flowers were collected, inspected for pollen smears, and measured for comparison to floral features. • Among orchid taxa, C. candidum had the smallest flowers, lowest number and variety of insect visitors, and lowest fruit to flower ratios. These measures were intermediate in hybrids and highest in C. parviflorum, despite low flower numbers in the latter. Within orchid taxa, fruit number was positively related to flower number, but fruit to flower ratios decreased slightly, as would be expected if pollinators left unrewarding patches. Potential pollinators included the dipteran Odontomyia pubescens and hymenopterans Andrena spp., Apis mellifera, and Lasioglossum zonulum. • Cypripedium parviflorum had a reproductive advantage over C. candidum across multiple populations and years. Hybrids showed segregation for floral traits, and hybrid fruiting success increased with a deeper intensity of yellow pigment and larger escape routes for floral visitors. These same attributes likely contributed to the relatively high fruit set in C. parviflorum in the study region.
Sustainable harvesting and conservation of Laelia furfuracea, a rare epiphytic orchid from Oaxaca, Mexico
Many epiphytic orchids are harvested in Mexico for different purposes. Laelia furfuracea is one of the most intensively traded species. Its inflorescences are used as ornaments during the December festivities. We investigated the effect of severing the flowering pseudobulb. This is the traditional technique frequently used by collectors at the study area. We wished to investigate its effects on the production of new pseudobulbs, as well as on their size and flowering probability. Also, we examined the survival probability and growth of individuals that had fallen on the ground to evaluate their potential as trading resources. Inflorescence collection did not affect the production of new pseudobulbs the following season. However, it affected the size of these pseudobulbs, as well as their flowering probability. Yet, the direction of this effect was not consistent between years. Nearly six percent of all L. furfuracea plants at the study site were found on the ground. Over 80 percent of them survived for at least two years, although most of them showed pseudobulb loss over that period of time. We conclude that harvesting of flowering pseudobulbs may be sustainable in terms of its effects on plant performance, at least in the short term. The active management of plants that have fallen on the ground may reduce the harvesting pressure on natural populations. Harvesting of flowering pseudobulbs may diminish some aspects of plant performance, but its effects need to be evaluated with complete life cycle data and take into account interannual variation in vital rates.
Data from: Asymmetric contributions of seed and pollen to gene dispersal in the marsh orchid Dactylorhiza umbrosa in Asia Minor
<p>Orchids differ from other plants in their extremely small and partly air-filled seeds that can be transported long distances by wind. Seed dispersal in orchids is expected to contribute strongly to overall gene flow, and orchids generally express low levels of genetic differentiation between populations and low pollen to seed flow ratios. However, studies in orchids distributed in northern Europe have often found a poor geographic structuring of genetic variation. Here, we studied geographic differentiation in the marsh orchid <i>Dactylorhiza umbrosa</i>, which is widely distributed in upland regions from Asia Minor to Central Asia. These areas were less affected by Pleistocene ice ages than northern Europe and the orchid should have been able to survive the last ice age in local refugia. In the plastid genome, which is dispersed by seeds, populations at close distance were clearly divergent, but the differentiation still increased with geographic distance, and a significant phylogeographic structure had developed. In the nuclear genome, which is dispersed by both seeds and pollen, populations showed an even stronger correlation between genetic and geographic distance, but average levels of differentiation were lower than in the plastid genome, and no phylogeographic structure was evident. Combining plastid and nuclear data, we found that the ratio of pollen to seed dispersal (<i>mp/ms</i>) decreases with physical distance. Comparison with orchids that grow in parts of Europe that were glaciated during the last ice suggests that a balanced structure of genetic diversity develops only slowly in many terrestrial orchids, despite of efficient seed dispersal.</p>
Data from: Similarity in mycorrhizal communities associating with two widespread terrestrial orchids decays with distance
Aim: Interactions with mycorrhizal fungi are increasingly recognized as an important factor underlying the distribution and abundance of orchid species. However, the geographic distribution of orchid mycorrhizal fungi (OMF) and how their communities vary over large geographical areas are less well understood. Because climatic and environmental similarity may decrease with geographical distance or because some OMF have limited dispersal capabilities, similarities in orchid mycorrhizal communities can be expected to decrease with increasing distances separating orchid populations. However, up till now empirical evidence is largely lacking. Location: Eurasia Taxa: Gymnadenia conopsea (L.) R. Brown and Epipactis helleborine (L.) Crantz Methods: High-throughput sequencing was used to perform a cross-continental comparison of OMF that associate with two widespread Eurasian terrestrial orchids, Epipactis helleborine and Gymnadenia conopsea. Both phylogenetic and non-phylogenetic measures of community dissimilarity and their components were calculated and related to geographic distances using Mantel tests. Results: Our results showed that in both orchid species similarity in mycorrhizal communities decreased significantly with geographical distance. Decomposing the contribution of spatial turnover and nestedness to overall dissimilarity showed that the observed dissimilarity was mainly the result of species replacement between regions, and not of species loss. Similarly, a strong relationship was observed between phylogenetic community dissimilarity and geographic distance. Decomposing PCD values into a nonphylogenetic and phylogenetic component showed that orchid populations located closely next to each other were likely to contain the same OTUs, but that the non-shared taxa came from different phylogenetic clades. Species indicator analyses showed that the majority of OMF OTUs were restricted to particular geographic areas. However, some OTUs occurred in both continents, indicating that some fungi have very wide distributions. Main conclusions: Overall, these results demonstrate that orchid mycorrhizal communities differ substantially across large geographic areas, but that the distribution of orchids is not necessarily restricted by the distribution of particular OMF. Hence, widespread orchid species can be considered mycorrhizal generalists that are flexible in the OMF with which they associate across large geographic areas.
A multi-tiered sequence capture strategy spanning broad evolutionary scales: application for phylogenetic and phylogeographic studies of orchids
<p><span><span><span><span><span><span><span><span><span><span><span>With over 25,000 species, the drivers of diversity in the Orchidaceae remain to be fully understood. Here we outline a multi-tiered sequence capture strategy aimed at capturing 100's of loci to enable phylogenetic resolution from subtribe to subspecific levels in orchids of the tribe Diurideae. For the probe design, we mined subsets of 18 transcriptomes, to give five target sequence sets aimed at the tribe (Sets 1 & 2), subtribe (Set 3), and within subtribe levels (Sets 4 & 5). Analysis included alternative <i>de novo </i>and reference-guided assembly, before target sequence extraction, annotation and alignment, and application of a homology-aware <i>k-mer</i> block phylogenomic approach, prior to phylogenetic inference using maximum-likelihood. Our evaluation considered 87 taxa in two test datasets: 67 samples spanning the tribe, and 72samples involving 24 closely related <i>Caladenia</i> species. The tiered design achieved high target loci recovery (>89%), with the median number of recovered loci in Sets 1–5 as follows: 212, 219, 816, 1024, and 1009, respectively. Interestingly, as a first test of the homologous <i>k</i>-mer approach for targeted sequence capture data, our study revealed its potential for enabling robust phylogenetic species tree inferences. Specifically, we found matching, and in one case improved phylogenetic resolution within species complexes, compared to conventional phylogenetic analysis involving target gene extraction. Our findings indicate that a customised multi-tiered sequence capture strategy, in combination with promising yet under-utilized phylogenomic approaches, will be effective for groups where interspecific divergence is recent, but information on deeper phylogenetic relationships is also required.</span></span></span></span></span></span></span></span></span></span></span></p>
The mycorrhizal community of the epiphytic orchid Thrixspermum japonicum is strongly biased toward a single Ceratobasidiaceae fungus, despite a wide range of fungal partners
<p>PREMISE: Orchids depend primarily on mycorrhizal fungi to obtain nutrients throughout their life cycle. Epiphytic orchids account for 69% of orchid diversity. The unstable availability of water and nutrients in their arboreal habitats often results in severe water and nutrient stresses. Consequently, mycorrhizal associations may be important for the survival of epiphytic orchids, but our understanding thereof remains limited. Here, we investigated the mycorrhizal community in a single epiphytic orchid species, using more samples than in any previous study.</p> <p>METHODS: We assessed the mycorrhizal communities of Thrixspermum japonicum, one of the most common epiphytic orchids in the temperate region of Japan. In total, 144 individuals were collected from 28 host tree species at 20 sites across 1300 km. The mycorrhizal fungi were identified based on nuclear ribosomal DNA internal transcribed spacer sequences and assigned operational taxonomic units (OTUs) based on 97% sequence similarity.</p> <p>RESULTS: We obtained 24 OTUs, of which 9 and 15 belonged to the Ceratobasidiaceae and Tulasnellaceae, respectively. These OTUs are widely distributed throughout the phylogenetic trees of the two fungal families. However, a single Ceratobasidiaceae OTU accounted for 49.7% of all fungal sequences and was predominant in samples from 15 host tree species and 12 sites.</p> <p>CONCLUSIONS: Our results imply that despite having a broad range of mycorrhizal partners, T. japonicum was predominantly associated with a single fungal taxon at most of the sites among the host-tree species investigated. These findings contribute to elucidating mycorrhizal symbiosis in epiphytic ha</p>
Data from: The functional significance of complex floral colour pattern in a food-deceptive orchid
Many non-rewarding orchid species mimic the signals of co-occurring food flowers and thereby attract food-seeking animal pollinators. These signals are often visually complex with a colour pattern that contrasts between outer and central parts. The significance of this colour complexity for the pollination success of flowers of deceptive orchids has scarcely been investigated. We tested the effects of the colour patterns of the food-deceptive orchid Paphiopedilum micranthum on bumblebee visitation choices and pollination success using behavioural experiments in a community context. Using comparative phylogenetic analysis and a bee vision model, we also compared the colour patterns of P. micranthum with those of its congeners and sympatric food flowers. The probability of both long-range approach and close-up choice by bumblebees to orchids was all enhanced in communities with food flowers similar in colour pattern to the orchid. Probability of long-range approach and close-up choice was negatively correlated with colour distance between orchid and food flowers in floral outer and centre, respectively. Flowers of P. micranthum that were manipulated to reduce visual complexity had reduced male and female pollination success. Phylogenetic analysis revealed that the outer floral colour of P. micranthum is apomorphic and thus likely represents an evolutionary innovation, whereas the central colour is plesiomorphic and thus likely to function in the bumblebee pollination system as an exaptation. The contrast between the inner and outer colours appears to exploit visual preferences of bumblebees acquired during foraging on local food plants with similar colour patterns. This study highlights the adaptive significance of colour patterns in successful food deception and the importance of complex signals in facilitating interspecific interactions.
Data from: Exploiting mycorrhizas in broad daylight: partial mycoheterotrophy is a common nutritional strategy in meadow orchids.
Partial mycoheterotrophy (PMH) is a nutritional mode in which plants utilize organic matter, i.e. carbon, both from photosynthesis and a fungal source. The latter reverses the direction of plant-to-fungus carbon flow as usually assumed in mycorrhizal mutualisms. Based on significant enrichment in the heavy isotope 13C, a growing number of PMH orchid species have been identified. These PMH orchids are mostly associated with fungi simultaneously forming ectomycorrhizas with forest trees. In contrast, the much more common orchids that associate with rhizoctonia fungi, which are decomposers, have stable isotope profiles most often characterized by high 15N enrichment and high nitrogen concentrations but either an insignificant 13C enrichment or depletion relative to autotrophic plants. Using hydrogen stable isotope abundances recent investigations showed PMH in rhizoctonia-associated orchids growing under light-limited conditions. Hydrogen isotope abundances can be used as substitute for carbon isotope abundances in cases where autotrophic and heterotrophic carbon sources are insufficiently distinctive to indicate PMH. To determine whether rhizoctonia-associated orchids growing in habitats with high irradiance feature PMH as a nutritional mode, we sampled 13 orchid species growing in montane meadows, four forest orchid species and 34 autotrophic reference species. We analysed δ2H, δ13C, δ15N and δ18O and determined nitrogen concentrations. Orchid mycorrhizal fungi were identified by DNA sequencing. As expected, we found high enrichments in 2H, 13C, 15N and nitrogen concentrations in the ectomycorrhiza-associated forest orchids, and the rhizoctonia-associated Neottia cordata from a forest site was identified as PMH. Most orchids inhabiting sunny meadows lacked 13C enrichment or were even significantly depleted in 13C relative to autotrophic references. However, we infer PMH for the majority of these meadow orchids due to both significant 2H and 15N enrichment and high nitrogen concentrations. Pseudorchis albida was the sole autotrophic orchid in this study as it exhibited neither enrichment in any isotope nor a distinctive leaf nitrogen concentration. Synthesis. Our findings demonstrate that partial mycoheterotrophy is a trophic continuum between the extreme endpoints of autotrophy and full mycoheterotrophy, ranging from marginal to pronounced. In rhizoctonia-associated orchids, partial mycoheterotrophy plays a far greater role than previously assumed, even in full light conditions.
Data from: Relative importance of pollen and seed dispersal across a Neotropical mountain landscape for an epiphtytic orchid.
Populations of many species are isolated within narrow elevation bands of Neotropical mountain habitat, and how well dispersal maintains genetic connectivity is unknown. We asked whether genetic structure of an epiphytic orchid, Epidendrum firmum, corresponds to gaps between Costa Rican mountain ranges, and how these gaps influence pollen and seed flow. We predicted that significant genetic structure exists among mountain ranges due to different colonization histories and limited gene flow. Furthermore, we predicted that pollen movement contributes more to gene flow than seeds because seeds are released into strong winds perpendicular to the narrow northwest-southeast species distribution, while the likely pollinators are strong fliers. Individuals from 12 populations and three mountain ranges were genotyped with nuclear microsatellites (nDNA) and chloroplast sequences (cpDNA). Genetic diversity was high for both markers, while nDNA genetic structure was low (FSTn = 0.020) and cpDNA structure was moderate (FSTc = 0.443). Significant cpDNA barriers occurred within and among mountain ranges, but nDNA barriers were not significant after accounting for geographic distance. Consistent with these contrasting patterns of genetic structure, pollen contributes substantially more to gene flow among populations than seed (mp/ms = 46). Pollinators mediated extensive gene flow, eroding nDNA colonization footprints, while seed flow was comparatively limited, possibly due to directional prevailing winds across linearly distributed populations. Dispersal traits alone may not accurately inform predictions about gene flow or genetic structure, supporting the need for research into the potentially crucial role of pollinators and landscape context in gene flow among isolated populations.
Data from: Evolutionary relationships among pollinators and repeated pollinator sharing in sexually deceptive orchids
The mechanism of pollinator attraction is predicted to strongly influence both plant diversification and the extent of pollinator sharing between species. Sexually deceptive orchids rely on mimicry of species-specific sex pheromones to attract their insect pollinators. Given that sex pheromones tend to be conserved among related species, we predicted that in sexually deceptive orchids, (i) pollinator sharing is rare, (ii) closely related orchids use closely related pollinators and (iii) there is strong bias in the wasp lineages exploited by orchids. We focused on species that are pollinated by sexual deception of thynnine wasps in the distantly related genera Caladenia and Drakaea, including new field observations for 45 species of Caladenia. Specialization was extreme with most orchids using a single pollinator species. Unexpectedly, seven cases of pollinator sharing were found, including two between Caladenia and Drakaea, which exhibit strikingly different floral morphology. Phylogenetic analysis of pollinators using four nuclear sequence loci demonstrated that although orchids within major clades primarily use closely related pollinator species, up to 17% of orchids within these clades are pollinated by a member of a phylogenetically distant wasp genus. Further, compared to the total diversity of thynnine wasps within the study region, orchids show a strong bias towards exploiting certain genera. Although these patterns may arise through conservatism in the chemical classes used in sex pheromones, apparent switches between wasp clades suggest unexpected flexibility in floral semiochemical production. Alternatively, wasp sex pheromones within lineages may exhibit greater chemical diversity than currently appreciated.
Data from: Genetic inference of epiphytic orchid colonization; it may only take one
Colonization of vacant habitat is a fundamental ecological process that affects the ability of species to persist and undergo range modifications in continually shifting landscapes. Thus, understanding factors that affect and limit colonization has important ecological and conservation implications. Epiphytic orchids are increasingly threatened by various factors, including anthropogenic habitat disturbance. As cleared areas (e.g. pastures) are recolonized by suitable host trees, the establishment and genetic composition of epiphytic orchid populations are likely a function of their colonization patterns. We used genetic analyses to infer the prevailing colonization pattern of the epiphytic orchid, Brassavola nodosa. Samples from three populations (i.e. individuals within a tree) from each of five pastures in the dry forest of Costa Rica were genotyped with neutral nuclear and chloroplast markers. Spatial autocorrelation and hierarchical genetic structure analyses were used to assess the relatedness of individuals within populations, among populations within pastures and among populations in different pastures. The results showed significant relatedness within populations (mean r = 0.166) and significant but lower relatedness among populations within a pasture (mean r = 0.058). Our data suggest that colonization of available habitats is by few individuals with subsequent population expansion resulting from in situ reproduction, and that individuals within a tree are not a random sample of the regional seed pool. Furthermore, populations within a pasture were likely colonized by seeds produced by founders of a neighbouring population within that pasture. These results have important ramifications for understanding conservation measures needed for this species and other epiphytic orchids.
Data from: Conservation genetics of Neotropical pollinators revisited: microsatellite analysis suggests that diploid males are rare in orchid bees
Allozyme analyses have suggested that Neotropical orchid bee (Euglossini) pollinators are vulnerable because of putative high frequencies of diploid males, a result of loss of sex allele diversity in small hymenopteran populations with single locus complementary sex determination. Our analysis of 1010 males from 27 species of euglossine bees sampled across the Neotropics at 2-11 polymorphic microsatellite loci revealed only 5 diploid males at an overall frequency of 0.005 (95% CIs 0.002-0.010); errors through genetic non-detection of diploid males were likely small. In contrast to allozyme-based studies, we detected very weak or insignificant population genetic structure, even for a pair of populations >500 km apart, possibly accounting for low diploid male frequencies. Technical flaws in previous allozyme-based analyses have probably led to considerable overestimation of diploid male production in orchid bees. Other factors may have a more immediate impact on population persistence than the genetic load imposed by diploid males on these important Neotropical pollinators.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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