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3,505 results for “completive”
Repeat-masked <i>Strix occidentalis caurina</i> nuclear genome version 1.0 and complete mitochondrial genome
<p><strong>StrOccCau_1.0_nuc_finalMito_RepeatMasked.fa.bz2</strong> : This file is homology-based and <em>de novo</em> model-based repeat-masking of the reference <em>Strix occidentalis caurina</em> genome StrOccCau_1.0_nuc.fa from Hanna et al., 2017a,b) with the mitochondrial genome from Hanna et al. (2017c).</p> <p><strong>StrOccCau_1.0_nuc_finalMito_RepeatMasked.bed.bgz</strong> : This is a file in Browser Extensible Data (BED) format that provides the genomic intervals of the N-regions in the above masked assembly. The N-regions include hard-masked low complexity and repeat regions as well as N-regions that were gaps in the original assembly. I compressed the file using the bgzip tool from HTSlib version 1.7 (Davies et al. 2018).</p> <p>See full details of the creation of these files in section 2.1 of the materials and methods at protocols.io (http://dx.doi.org/10.17504/protocols.io.rmrd456).</p> <p>If you use these data, please cite the following:</p> <p>Hanna ZR. 2018. Repeat-masked <em>Strix occidentalis caurina</em> nuclear genome version 1.0 and complete mitochondrial genome. Version 1.0.0. <em>Zenodo.</em></p> <p> </p> <p><strong>References</strong></p> <p>Davies R, Randall JC, McCarthy SA, Bonfield J, Pollard MO, Marshall J, et al. 2018. HTSlib. Version 1.7. [Accessed 2018 Mar 19]. Available from: https://github.com/samtools/htslib</p> <p>Hanna ZR, Henderson JB, Wall JD, Emerling CA, Fuchs J, Runckel C, et al. 2017a. Northern Spotted Owl (<em>Strix occidentalis caurina</em>) Genome: Divergence with the Barred Owl (<em>Strix varia</em>) and Characterization of Light-Associated Genes. Genome Biology and Evolution. 9: 2522–2545. DOI: 10.1093/gbe/evx158</p> <p>Hanna ZR, Henderson JB, Wall JD, Emerling CA, Fuchs J, Runckel C, et al. 2017b. Supplemental dataset for Northern Spotted Owl (<em>Strix occidentalis caurina</em>) genome assembly version 1.0. <em>Zenodo</em>. DOI: 10.5281/zenodo.822859</p> <p>Hanna ZR, Henderson JB, Sellas AB, Fuchs J, Bowie RCK, Dumbacher JP. 2017c. Complete mitochondrial genome sequences of the northern spotted owl (<em>Strix occidentalis caurina</em>) and the barred owl (<em>Strix varia</em>; Aves: Strigiformes: Strigidae) confirm the presence of a duplicated control region. <em>PeerJ</em>. 5: e3901. DOI: 10.7717/peerj.3901</p> <p> </p>
A dataset of completeness of radiosonde humidity observations based on the IGRA
<p>This dataset describes the completeness of radiosonde humidity observations, from the early times until the end of 2016, based on the sounding data of the Integrated Global Radiosonde Archive (IGRA) Version 2 released by the NOAA's National Centers for Environmental Information. The IGRA stations for which we have radiosonde data on at least 5% of the annual soundings (radiosonde and pilot balloon observations) for at least one year were evaluated for every year reported in their periods of record according to specified parameters regarding humidity data in the form of either relative humidity or dewpoint-depression.</p> <p>The dataset is divided in three components: 1) Statistical metadata describing humidity completeness on a yearly basis for each station; 2) Metadata describing humidity completeness in individual observations from the same stations; 3) List of the 1723 stations represented in the whole dataset, including their geographic coordinates, along with metadata providing information on the observing periods for humidity and the corresponding amounts of observations. The accompanying Readme file describes the data format and file contents.</p> <p> </p>
ArXiV Archive: A tidy and complete archive of metadata for papers on arxiv.org, 1993-2019
<p>This is a full archive of metadata about papers on arxiv.org from 1993-2018, including abstracts. Data is tidy and packed in TSV files, in two different collections of the total dataset: per year (all categories) and per primary category (all years). This archive also includes Jupyter notebooks for unpacking and analyzing it in python. See the README.md file and https://github.com/staeiou/arxiv_archive for more information.</p> <p>This release has the exact same data as in v1.0.0, but the notebook 4-analysis-examples.ipynb is updated and fixes an analysis bug.</p>
Fig. 1. A. Canthidium gigas Balthasar, 1939, hypomerum with complete hypomeral carina. B in Taxonomic revision of the Canthidium Erichson, 1847 species of the gigas group (Coleoptera, Scarabaeidae, Scarabaeinae)
Fig. 1. A. Canthidium gigas Balthasar, 1939, hypomerum with complete hypomeral carina. B. Canthidium kelleri (Martínez et al., 1964), hypomerum with incomplete hypomeral carina. C. Disc of pronotum completely punctated. D. Disc of pronotum with indefinite punctation. Not to scale.
3D-structured Supports create complete Data Sets for Electron Crystallography
<p>Each tar file contains the raw files in HDF5 format, together with the XDS.INP file used for data integration.</p> <p>NB: The meta-data in the HDF5 files have no meaning, please refer to the respective XDS.INP file for respective information.</p>
Text-fig. 3. "Glossanodon" musceli A – nearly complete specimen NM Pc 02875a; B – caudal skeleton of specimens NM Pc 02871b and NM Pc 02871a (B-1 and B-2 respectively; part and counterpart) and its tentative reconstruction (B-3); C – specimen NM Pc 02873a, general view (C-1) and detail of the head (C-2); D – specimen NM Pc 02874a (the white arrow shows normally developed neural spine on the anterior abdominal vertebra). Abbreviations: ao – antorbitale; d – dentale; epu – epurale; fr – frontale; hp1-6 – hypurals 1-6; io – infraorbitals; mx – maxillare; npu2 – neural spine of second preural vertebra; ph – parhypurale; pu1 – first preural vertebra; pop – preoperculum; psp – parasphenoideum; stu – stegurale; u1 – urale 1; u2 – urale 2. in An Annotated List Of The Oligocene Fish Fauna From The Osíčko Locality (Menilitic Fm.; Moravia, The Czech Republic)
Text-fig. 3. "Glossanodon" musceli A – nearly complete specimen NM Pc 02875a; B – caudal skeleton of specimens NM Pc 02871b and NM Pc 02871a (B-1 and B-2 respectively; part and counterpart) and its tentative reconstruction (B-3); C – specimen NM Pc 02873a, general view (C-1) and detail of the head (C-2); D – specimen NM Pc 02874a (the white arrow shows normally developed neural spine on the anterior abdominal vertebra). Abbreviations: ao – antorbitale; d – dentale; epu – epurale; fr – frontale; hp1-6 – hypurals 1-6; io – infraorbitals; mx – maxillare; npu2 – neural spine of second preural vertebra; ph – parhypurale; pu1 – first preural vertebra; pop – preoperculum; psp – parasphenoideum; stu – stegurale; u1 – urale 1; u2 – urale 2.
Text-fig. 3. Coeloma vigil A. MILNE-EDWARDS. Nearly complete specimens from several different layers. A – layer 15; B – layer 11; C – layer 16. All specimens are deposited at KGP MH. Key: ch=chelipeds; es=eye stalks; p=pereiopods. Scale bar 10 mm. Specimens were covered with ammonium chloride prior to photography. in The Priabonian Bryozoan-Decapod Association From The Borové Formation (The Ďurkovec Quarry, Ne Slovakia) And Its Palaeoecological Implications
Text-fig. 3. Coeloma vigil A. MILNE-EDWARDS. Nearly complete specimens from several different layers. A – layer 15; B – layer 11; C – layer 16. All specimens are deposited at KGP MH. Key: ch=chelipeds; es=eye stalks; p=pereiopods. Scale bar 10 mm. Specimens were covered with ammonium chloride prior to photography.
Text-fig. 7. Cercidiphyllaceae 1–3. Trochodendroides genetrix (NEWBERRY) comb. nov. and associated reproductive structures (4, 5) from Killpecker Cr., Rock Springs, Wyoming (UF loc. 18126). 1. Twig with three attached leaves, showing variation in leaf shape and serration; composite figure assembled from images of both counterparts, UF 35427. 2. Complete leaf including petiole, UF 13243. 3. Same as 2, detail of venation. 4. Nyssidium arcticum (HEER) ILJINSKAYA fruits on an incomplete axis, UF 35454. 5. Dispersed winged seed, UF 35479. Scale = 3 cm in 1, 2; 1 cm in 3, 4; 0.5 cm in 5. in Revisions To Roland Brown'S North American Paleocene Flora
Text-fig. 7. Cercidiphyllaceae 1–3. Trochodendroides genetrix (NEWBERRY) comb. nov. and associated reproductive structures (4, 5) from Killpecker Cr., Rock Springs, Wyoming (UF loc. 18126). 1. Twig with three attached leaves, showing variation in leaf shape and serration; composite figure assembled from images of both counterparts, UF 35427. 2. Complete leaf including petiole, UF 13243. 3. Same as 2, detail of venation. 4. Nyssidium arcticum (HEER) ILJINSKAYA fruits on an incomplete axis, UF 35454. 5. Dispersed winged seed, UF 35479. Scale = 3 cm in 1, 2; 1 cm in 3, 4; 0.5 cm in 5.
Text-fig. 1. "Plant screen" scheme of complete results of the IPR-vegetation analysis derived from the database. in The Integrated Plant Record Vegetation Analysis: Internet Platform And Online Application
Text-fig. 1. "Plant screen" scheme of complete results of the IPR-vegetation analysis derived from the database.
Text-fig. 3. Simplified geological map of the Krkonoše Piedmont Basin (based on Blecha et al. 1997) with the palaeogeographic outline of the Rudník lake deposits. The site of Vrchlabí – road cut represents the complete Rudník "Horizon" sequence with record of various developmental stages of the lake. Numbers of sites are simplified. in Permian Fauna Of The Krkonoše Piedmont Basin (Bohemian Massif, Central Europe)
Text-fig. 3. Simplified geological map of the Krkonoše Piedmont Basin (based on Blecha et al. 1997) with the palaeogeographic outline of the Rudník lake deposits. The site of Vrchlabí – road cut represents the complete Rudník "Horizon" sequence with record of various developmental stages of the lake. Numbers of sites are simplified.
Fig. 91. A mandible fragment with a partial m2 and complete m3 in Species Taxonomy, Phylogeny, and Biogeography of the Brontotheriidae (Mammalia: Perissodactyla)
Fig. 91. A mandible fragment with a partial m2 and complete m3 referred to Pygmaetitan panxianensis (IVPP V6524). (A) Dorsal view, (B), left (labial) view, (C) medial (lingual) view.
Figure 3 in Complete mitochondrial genome of an Arctic Collared Lemming subspecies endemic to the Novaya Zemlya Archipelago, Russia
Figure 3. Bayesian Inference phylogenetic tree of the concatenated protein coding and rRNA genes based on available mitogenomes of Arctic Collared Lemming Dicrostonyx torquatus. The red font indicates the Novaya Zemlya subspecies D. torquatus ungulatus. The numbers near nodes represent Bayesian Posterior Probabilities (BPP) of MrBayes / Bootstrap Support (BS) values of IQ-Tree. The values above 95% for both BPP/BS are replaced with an asterisk. Outgroup taxa (Dicrostonyx hudsonius and D. groenlandicus) are not shown.
Figure 1 in Complete mitochondrial genome of an Arctic Collared Lemming subspecies endemic to the Novaya Zemlya Archipelago, Russia
Figure 1. Morphology of Novaya Zemlya Collared Lemming Dicrostonyx torquatus ungulatus (von Baer, 1841) from Novaya Zemlya Archipelago, Arctic Russia [topotype No. RMBH Lem16]: (A, B) specimen: (A) dorsal view, (B) ventral view; (C, D, E) crania: (C) dorsal view, (D) ventral view, (E) lateral view; (F, G) lower jaw: (F) outer lateral view, (G) inner lateral view; (H, I) molar rows: (H) maxillary, and (I) mandibular. Scale bars = 10 mm. (Photos: Elizaveta A. Spitsyna).
Figure 2 in A completely resolved phylogenetic tree of British spiders (Arachnida: Araneae)
Figure 2. Selected morphological character states mapped onto the phylogenetic tree of British linyphiid spiders. The framework provided by the phylogenetic information allows the clear identification of patterns of character evolution, including a considerable degree of homoplasy for all characters. The definition of characters and character states is based on the linyphiid identification key by Anna Stäubli, provided on the Spiders of Europe website. The order of columns (from left to right) follows the order of the legends (from top to bottom). The left block of columns refers to characters applying to the male, the right to characters of the female. The female of Centromerus minutissimus has not yet been described.
Figure 1 in A completely resolved phylogenetic tree of British spiders (Arachnida: Araneae)
Figure 1. Fully resolved phylogenetic tree of the British spider species. All non-British spider families with European representatives are included for reference, and the tree is rooted using Liphistiidae as the outgroup. Branch lengths are arbitrary and do not indicate the timing or degree of divergence. For readability, species from the same family are shown in the same colour.
Figure 3 in A completely resolved phylogenetic tree of British spiders (Arachnida: Araneae)
Figure 3. Selected ecological and conservation biological variables mapped onto the phylogenetic tree of British spiders. The abundance indicates the number of occupied hectads, with a 1% depreciation per year since the latest record. The recency of the observations is indicated as the median year of the latest record per hectad. The northern distribution is indicated by the median distance of the occupied hectads from the southern edge of the British Ordnance Survey national grid. The Vulnerability Index is 1 minus the quantile of the average of the recency quantile and the abundance quantile for each species. Higher values indicate species that are reported from only a small number of hectads and have few or no recent records; low values indicate species that are widespread and have often been recorded recently. The Contraction Index is the quantile of the difference between the abundance and recency quantiles. Higher values indicate widespread species with relatively few recent records; low values indicate highly localised species that have nevertheless a large fraction of recent records (e.g., new arrivals and expanding species). The clades highlighted in colour are discussed in more detail in the text. The order of columns (from left to right) follows the order of the legends (from top to bottom). Based on data provided by the UK Spider Recording Scheme.
Fig. 1 in The completeness of the fossil record of plesiosaurs, marine reptiles from the Mesozoic
Fig. 1. Two of the three different morphotypes used in Plesiosauria in this analysis, demonstrating the different regions used in skeletal completeness metrics. A. Cryptoclidus, a "plesiosauromorph". B. Liopleurodon, a "pliosauromorph". Skeletal regions: i, skull and mandible; ii, cervical vertebrae and ribs; iii, dorsal and sacral vertebrae and ribs; iv, pectoral girdle; v, fore limbs; vi, pelvic girdle; vii, hind limbs; viii, caudal vertebrae and ribs. Outlines modified from O'Keefe (2002). Not to scale.
Fig. 5 in The completeness of the fossil record of plesiosaurs, marine reptiles from the Mesozoic
Fig. 5. Box-and-whisker plots showing the distribution of CCM2 and SCM2 data for several major clades of Mesozoic tetrapods. A. Comparison of SCM2 and CCM2 data for plesiosaurs. B. Comparison of CCM2 data for plesiosaurs, sauropodomorphs (from Mannion and Upchurch 2010), birds (from Brocklehurst et al. 2012), and pterosaurs (from Dean et al. 2016). C. Comparison of SCM2 data for plesiosaurs, ichthyosaurs (from Cleary et al. 2015), and sauropodomorphs (from Mannion and Upchurch 2010). All silhouettes are from phylopic.org, and are credited to Adam Stuart Smith (Plesiosaurus), Scott Hartman (Brachiosaurus), T. Michael Keesey (Archaeopteryx), and Gareth Monger (Pterodactylus, Ichthyosaurus). Abbreviations: CCM, character completeness metric; SCM, skeletal completeness metric (for detailed explanation of terms see Completeness metrics in Methods section).
Fig. 6. Plesiosaur completeness and discovery through historical time. A in The completeness of the fossil record of plesiosaurs, marine reptiles from the Mesozoic
Fig. 6. Plesiosaur completeness and discovery through historical time. A. Plesiosaur CCM compared to the year in which the species was named. B. Plesiosaur SCM compared to the year in which the species was named. C. Collector's curve of the accumulation of valid plesiosaur species through time. Abbreviations: CCM, character completeness metric; SCM, skeletal completeness metric.
Fig. 4 in The completeness of the fossil record of plesiosaurs, marine reptiles from the Mesozoic
Fig. 4. Changes in skeletal completeness through time. A. Plesiosaur SCM2 and ichthyosaur SCM2. B. Plesiosaur CCM2 and pterosaur CCM2. C. Plesiosaur CCM2 and Mesozoic bird CCM2. Silhouettes are from phylopic.org, and are credited to Adam Stuart Smith (Plesiosaurus), T. Michael Keesey (Archaeopteryx), and Gareth Monger (Pterodactylus, Ichthyosaurus). Abbreviations: CCM, character completeness metric; SCM, skeletal completeness metric (for detailed explanation of terms see Completeness metrics in Methods section).
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.