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181
datasets available to search
ShareScore release 0.9.0
Dataset results
181 results for “de novo assembly”
De novo transcriptome assembly and functional analyses on body tissues of Chrysodeixis includens larvae.
GEO Series GSE121104. Chrysodeixis includens. 4 samples. Type: Expression profiling by high throughput sequencing.
De novo Transcriptome Assembly of the Fresh-cut White Husk of Juglans cathayensis
GEO Series GSE128776. Juglans cathayensis. 6 samples. Type: Expression profiling by high throughput sequencing.
De novo transcriptome assembly and characterization of medicinal plant Lithospermum officinale to discover putative genes involved in specialized metabolites biosynthesis
GEO Series GSE111375. Lithospermum officinale. 3 samples. Type: Expression profiling by high throughput sequencing.
Chromera velia de novo transcriptome assembly, annotation and comparative transcriptomics
GEO Series GSE139820. Chromera velia. 6 samples. Type: Expression profiling by high throughput sequencing.
De novo assembly of the desert tree Haloxylon ammodendron (C. A. Mey.) based on RNA-Seq data provides insight into drought response, gene discovery and marker identification
GEO Series GSE63970. Haloxylon ammodendron. 5 samples. Type: Expression profiling by high throughput sequencing.
De novo assembly and transcriptome analysis of Ocimum americanum var. pilosum under low temperature
GEO Series GSE68980. Ocimum americanum. 4 samples. Type: Expression profiling by high throughput sequencing.
De novo assembly of siRNA immunity in wild plants
GEO Series GSE22079. Aesculus hippocastanum; Tilia platyphyllos; Betula pendula; Acer pseudoplatanus; Ulmus glabra; Corylus avellana; Quercus robur; Fagus sylvatica; Fraxinus excelsior. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
RNAseq data for de novo assembly of the Vuilleminia comedens transcriptome as it grows on wood
GEO Series GSE100126. Vuilleminia comedens. 3 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic analysis of Quercus mongolica leaves: de novo assembly, functional annotation and molecular markers mining
GEO Series GSE125799. Quercus mongolica. 1 samples. Type: Expression profiling by high throughput sequencing.
De novo assembly and characterization of Rhododendron hybridum Hort. (Ericaceae) global transcriptome using Illumina sequencing
GEO Series GSE97630. Rhododendron simsii. 1 samples. Type: Expression profiling by high throughput sequencing.
De novo transcriptome assembly based on RNA-seq and dynamic expression of key enzyme genes in loganin biosynthetic pathway of Cornus officinalis
GEO Series GSE108216. Cornus officinalis. 1 samples. Type: Expression profiling by high throughput sequencing.
De novo assembly and annotation of the singing mouse genome
GEO Series GSE212957. Scotinomys teguina. 17 samples. Type: Expression profiling by high throughput sequencing; Other.
Swr1 mediated H2A.ZPht1 incorporation designates centromere DNA for de novo CENP-ACnp1 assembly
GEO Series GSE106585. Schizosaccharomyces pombe. 25 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
De Novo Assembly and Characterization of Stress Transcriptome in a salinity-Tolerant Variety CS52 of Brassica juncea
GEO Series GSE66389. Brassica juncea. 2 samples. Type: Expression profiling by high throughput sequencing.
A ribosomal assembly stress response governed by the methionine cycle extends lifespan in C. elegans mutant with defective de novo proline biogenesis
GEO Series GSE149325. Caenorhabditis elegans. 14 samples. Type: Expression profiling by high throughput sequencing.
De novo assembled individual genome does not show advantage against standard reference genome: a demonstration of Chinese Han Population
GEO Series GSE121013. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
De novo transcriptome assembly of Stenocereus queretaroensis suspension cells and DEG nalysis
GEO Series GSE173230. Stenocereus queretaroensis. 6 samples. Type: Expression profiling by high throughput sequencing.
De novo Assembly and Comparative Analysis of Ten Petal Transcriptome (Brassicaceae) Revealed Phylogenetic Relationships and Genetic control of Flower Color Variation
GEO Series GSE93879. Orychophragmus violaceus; Iberis amara; Malcolmia maritima; Brassica oleracea; Matthiola incana; Lobularia maritima; Aubrieta x cultorum; Raphanus sativus; Eruca vesicaria subsp. sativa; Erysimum cheiri. 44 samples. Type: Expression profiling by high throughput sequencing.
Dynamics of de novo heterochromatin assembly and disassembly at replication forks ensures fork stability
GEO Series GSE220073. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
GEO Series GSE165787. Zea mays. 104 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.