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409
datasets available to search
ShareScore release 0.9.0
Dataset results
409 results for “genome organization”
A single-cell method to map higher-order 3D genome organization in thousands of individual cells reveals structural heterogeneity in mouse ES cells
GEO Series GSE154353. Mus musculus; Homo sapiens. 3 samples. Type: Other.
Deterioration of multi-level 3D genome organization during breast cancer progression [third-party re-analysis]
GEO Series GSE247171. Homo sapiens. 0 samples. Type: Third-party reanalysis; Genome binding/occupancy profiling by high throughput sequencing.
Allele-specific control of replication timing and genome organization during development [RNA-Seq]
GEO Series GSE114745. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle [PChi-C]
GEO Series GSE155153. Mus musculus. 16 samples. Type: Other.
Pericentromeric heterochromatin is hierarchically organized and spatially contacts H3K9me2/3 islands located in genomic euchromatin
GEO Series GSE125307. Drosophila melanogaster. 3 samples. Type: Other.
Nuclear speckles as a key regulator for the 3D genome organization [RNA-Seq]
GEO Series GSE130805. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
Antagonism between H3K27me3 and genome-lamina association drives atypical spatial genome organization in the totipotent embryo [scDam&T-seq]
GEO Series GSE218597. Mus musculus. 28 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
De novo mutations in the genome organizer CTCF cause Intellectual Disability (RNA-Seq)
GEO Series GSE46831. Homo sapiens. 11 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq: Loss of a heterochromatin anchor rescues altered genome organization and EDMD muscle defects triggered by a laminopathy mutation
GEO Series GSE136576. Caenorhabditis elegans. 8 samples. Type: Expression profiling by high throughput sequencing.
Chromatin states and genomic organization impact local replication features and timing
GEO Series GSE175752. Homo sapiens. 252 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs
GEO Series GSE7688. Mus musculus. 254 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by genome tiling array.
Rapid and Inexpensive Preparation of Genome-Wide Nucleosome Footprints from Model and Non-Model Organisms
GEO Series GSE141676. Schizosaccharomyces pombe; Neurospora crassa; Saccharomyces cerevisiae. 13 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide DNA methylation study of hip and knee osteoarthritic and healthy cartilage reveals embryonic organ and skeletal system morphogenesis as major pathways involved in osteoarthritis
GEO Series GSE73626. Homo sapiens. 18 samples. Type: Methylation profiling by genome tiling array.
CTCF chromatin residence time controls 3D genome organization, gene expression and DNA methylation in pluripotent cells [Hi-C]
GEO Series GSE153948. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A primary hierarchically organized patient-derived model enables in depth interrogation of stemness driven by the coding and non-coding genome
GEO Series GSE211596. Homo sapiens. 36 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Genome variation profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Chromatin architecture organized by histone variants H3.3 and H2A.Z in the human genome
GEO Series GSE13308. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genome organization, transcription and aberrant DNA replication contribute to genome instability at fragile sites
GEO Series GSE150354. Homo sapiens. 4 samples. Type: Other.
Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice
GEO Series GSE143724. Oryza sativa. 154 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Neurospora crassa genome organization requires subtelomeric facultative heterochromatin
GEO Series GSE82222. Neurospora crassa. 16 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Chromosome-level organization of the regulatory genome in the Drosophila nervous system [scRNA-seq]
GEO Series GSE214706. Drosophila melanogaster. 3 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.