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Supplementary material 7 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Maximum Likelihood tree were inferred from the datasets COI + Cytb + 28S-D2 using IQ-tree
Supplementary material 4 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Summary of taxonomic groups used in Fig. 8
Supplementary material 6 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Predicted folding pattern for tRNAs of Synergus nanlingensis mitochondrial genome
Figure 8 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 8 Bayesian analysis of the MAFFT alignment data set inferred from the COI + Cytb + 28S-D2 data sets. Posterior probabilities are shown at each node.
Figure 6 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 6 Structures of control regions in the mitogenome of Synergus nanlingensis Wang & Zeng, 2023, sp. nov. Abbreviation: NTR, nontandem repeat. Yellow shows A + T-rich regions.
Figure 4 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 4 Mitochondrial genome of Synergus nanlingensis Wang & Zeng, 2023, sp. nov. sequenced in this study. Genes outside the circle are encoded by the majority strand, and genes inside are encoded by the minority strand. The tRNA genes are indicated by their one-letter corresponding amino acids. The GC content is plotted using a black sliding window. Abbreviations: atp6 and atp8, ATP-synthase subunits 6 and 8; cob, cytochrome b; cox1–3, cytochrome oxidase subunits 1–3; nad1–6 and nad4L, NADH dehydrogenase subunits 1–6 and 4 L; rrnL and rrnS, large and small rRNA subunits.
Figure 7 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 7 Mitochondrial genome organization and gene rearrangement in Synergus nanlingensis Wang & Zeng, 2023, sp. nov. compared with the ancestral type of the insect mitochondrial genome. All abbreviations are the same as in Table 1 in the main text. Arrow pointing to the right represents the J-strand and arrow pointing to the left represents the N-strand. Genes are drawn in their original order; intergenic distances are not included, and sizes of genes are not to scale. Yellow boxes indicate genes with different positions from two control regions reported in Cynipidae. and white boxes indicate genes that are different in terms of both position and strand associations from the putative ancestral pattern. Gray boxes show conserved gene blocks.
Figure 5 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 5 Relative synonymous codon usage (RSCU) of Synergus nanlingensis Wang & Zeng, 2023, sp. nov. mitochondrial genome. Codon families are labeled on the x-axis. Values on the top of the bars indicate the percentage of each amino acid used for the construction of 13 protein-coding genes (PCGs).
Supplementary material 5 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Pair-wise COI sequence distances in Synergus
Supplementary material 2 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
List of PCR primers used in this study
Figure 1 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 1 Synergus nanlingensis Wang & Zeng, 2023, sp. nov. a general habitus (♀) b general habitus (♂) c antenna (♀) d antenna (♂) e head in anterior view (♀) f head in anterior view (♂) g head in dorsal view (♀) h head in dorsal view (♂).
Figure 2 from: Duan Y-B, Wang Y-J, Zhu D-H, Zeng Y, Wang X-D (2024) Description and mitochondrial genome sequencing of a new species of inquiline gall wasp, Synergus nanlingensis (Hymenoptera, Cynipidae, Synergini), from China. Journal of Hymenoptera Research 97: 105-126. https://doi.org/10.3897/jhr.97.119433
Figure 2 Synergus nanlingensis Wang & Zeng, 2023, sp. nov. a head in lateral view (♀) b fore wing (♀) c head in posterior view (♀) d mesosoma, lateral view (♀) e mesosoma, dorsal view (♀) f propodeum, dorsal view (♀) g metasoma, lateral view (♀) h metasoma, lateral view (♂) i tarsal claw.
Figures 42-45 from: Nastasi LF, Buffington ML, Davis CK, Deans AR (2024) Key to the North American tribes and genera of herb, rose, bramble, and inquiline gall wasps (Hymenoptera, Cynipoidea, Cynipidae sensu lato). ZooKeys 1196: 177-207. https://doi.org/10.3897/zookeys.1196.118460
Figures 42-45 42Synergus sp., fore wing (PSUC_FEM 000079457) 43Periclistus sp., dorsal view (PSUC_FEM 000250920) 44Synophromorpha sp., fore wing (PSUC_FEM 000250918) 45Synophromorpha sp., dorsal view (PSUC_FEM 000250918). Abbreviations: mcl = marginal cell, not = notauli.
Figures 87-95 from: Nastasi LF, Buffington ML, Davis CK, Deans AR (2024) Key to the North American tribes and genera of herb, rose, bramble, and inquiline gall wasps (Hymenoptera, Cynipoidea, Cynipidae sensu lato). ZooKeys 1196: 177-207. https://doi.org/10.3897/zookeys.1196.118460
Figures 87-95 87 galls of Antistrophus pisum on stem of Lygodesmia juncea (Asteraceae: Cichorieae), photographed by Chris Friesen (https://www.inaturalist.org/observations/95588437) 88 galls of Antistrophus rufus in dissected stem of Silphium laciniatum (Asteraceae: Heliantheae), photographed by Andy Deans (https://www.inaturalist.org/observations/64708490) 89 gall of Antistrophus silphii on apical stem of Silphium integrifolium (Asteraceae: Heliantheae), photographed by Andy Deans (https://www.inaturalist.org/observations/64708191) 90 galls of Diplolepis polita on leaves of Rosa sp. (Rosaceae: Roseae), photographed by Garth Harwood (https://www.inaturalist.org/observations/165442438) 91 gall of Diplolepis californica on Rosa sp. (Rosaceae: Roseae), photographed by Mary K. Hanson (https://www.inaturalist.org/observations/115655737) 92 gall of Diastrophus potentillae on Potentilla simplex (Rosaceae: Potentilleae), photographed by Tom Murray (https://www.inaturalist.org/observations/134669544) 93 gall of Diastrophus nebulosus on stem of Rubus sp. (Rosaceae: Rubeae), photographed by Pam Curtin (https://www.inaturalist.org/observations/174007397) 94 galls of Diastrophus kincaidii on stems of Rubus parviflorus (Rosaceae: Rubeae), photographed by Adam Heikkila (https://www.inaturalist.org/observations/173314109) 95 galls of Phanacis taraxaci on petiole of Taraxacum officinale (Asteraceae: Cichorieae), photographed by Nathan Earley (https://www.inaturalist.org/observations/174118397).
Figures 21-26 from: Nastasi LF, Buffington ML, Davis CK, Deans AR (2024) Key to the North American tribes and genera of herb, rose, bramble, and inquiline gall wasps (Hymenoptera, Cynipoidea, Cynipidae sensu lato). ZooKeys 1196: 177-207. https://doi.org/10.3897/zookeys.1196.118460
Figures 21-26 21Synergus atripennis, dorsolateral view (USNMENT01231845) 22Synergus sp., metasoma, lateral view (USNMENT01231858) 23Synergus sp., lateral view (PSUC_FEM 000079457) 24Synophromorpha sp., dorsolateral view (USNMENT01448499) 25Ceroptres sp., metasoma, dorsolateral view (USNMENT00917016) 26Diastrophus kincaidii, lateral view (PSUC_FEM 000251280). Abbreviations: ppt = pronotal plate, T2 = second metasomal tergite, T2+3 = completely fused second and third metasomal tergites, T3 = third metasomal tergite.
Figures 34-37 from: Nastasi LF, Buffington ML, Davis CK, Deans AR (2024) Key to the North American tribes and genera of herb, rose, bramble, and inquiline gall wasps (Hymenoptera, Cynipoidea, Cynipidae sensu lato). ZooKeys 1196: 177-207. https://doi.org/10.3897/zookeys.1196.118460
Figures 34-37 34Synergus sp., fore wing (PSUC_FEM 000079457) 35Periclistus sp., dorsal view (PSUC_FEM 000250920) 36Synophromorpha sp., fore wing (PSUC_FEM 000250918 37Synophromorpha sp., dorsal view (PSUC_FEM 000250918). Abbreviations: mcl = marginal cell.
Figures 76-79 from: Nastasi LF, Buffington ML, Davis CK, Deans AR (2024) Key to the North American tribes and genera of herb, rose, bramble, and inquiline gall wasps (Hymenoptera, Cynipoidea, Cynipidae sensu lato). ZooKeys 1196: 177-207. https://doi.org/10.3897/zookeys.1196.118460
Figures 76-79 76Diplolepis bicolor, lateral view (USNMENT01231831) 77Diplolepis bicolor, lateral view (USNMENT01231831) 78Diplolepis bicolor, dorsal view (USNMENT01231831) 79Diplolepis rosae, fore wing (USNMENT00655959).
Figures 62-67 from: Nastasi LF, Buffington ML, Davis CK, Deans AR (2024) Key to the North American tribes and genera of herb, rose, bramble, and inquiline gall wasps (Hymenoptera, Cynipoidea, Cynipidae sensu lato). ZooKeys 1196: 177-207. https://doi.org/10.3897/zookeys.1196.118460
Figures 62-67 62Antistrophus pisum, lateral view (PSUC_FEM 000247286) 63Antistrophus meganae, lateral view (PSUC_FEM 000248165) 64Antistrophus silphii, lateral view (CYNANT0048) 65Liposthenes glechomae, lateral view (PSUC_FEM 000248152) 66Aulacidea sp., lateral view (PSUC_FEM 000247286) 67Aulacidea hieracii, lateral view (PSUC_FEM 000253105).
Figures 52-57 from: Nastasi LF, Buffington ML, Davis CK, Deans AR (2024) Key to the North American tribes and genera of herb, rose, bramble, and inquiline gall wasps (Hymenoptera, Cynipoidea, Cynipidae sensu lato). ZooKeys 1196: 177-207. https://doi.org/10.3897/zookeys.1196.118460
Figures 52-57 52Antistrophus pisum, lateral view (PSUC_FEM 000247286) 53Antistrophus meganae, lateral view (PSUC_FEM 000248165) 54Antistrophus laciniatus, wings (USNMENT01448496) 55Aulacidea sp., lateral view (PSUC_FEM 000247286) 56Liposthenes glechomae, lateral view (PSUC_FEM 000248152) 57Aulacidea sp., wings (PSUC_FEM 000247286). Abbreviations: mcl = marginal cell, msp = mesopleuron, T2p = setose patch on second metasomal tergite.
Figures 1-8 from: Nastasi LF, Buffington ML, Davis CK, Deans AR (2024) Key to the North American tribes and genera of herb, rose, bramble, and inquiline gall wasps (Hymenoptera, Cynipoidea, Cynipidae sensu lato). ZooKeys 1196: 177-207. https://doi.org/10.3897/zookeys.1196.118460
Figures 1-8 1Andricus quercuscalifornicus, anterodorsal view (USNMENT01231839) 2Diplolepis bicolor, anterodorsal view (USNMENT01231831) 3Dryocosmus kuriphilus, lateral view (USNMENT01231861) 4Diplolepis bicolor, lateral view (USNMENT01231831) 5Synergus atripennis, anterodorsal view (USNMENT01231845) 6Antistrophus laciniatus, anterodorsal view (USNMENT01448496) 7Phanacis sp., lateral view (USNMENT01448498) 8Antistrophus laciniatus, lateral view (USNMENT01448496). Abbreviations: mep = pronotal submedial pits, plh = pronotum lateral height, pmh = pronotum medial height.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.