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1,454 results for “large scale”
HiDy: A Large-scale Hierarchical Dynamic Financial Knowledge Base
<p>HiDy is a hierarchical, dynamic, robust, diverse, and large-scale financial KB that aims to provide various valuable financial knowledge as critical benchmarking data for fair model testing in different financial tasks. Specifically, HiDy currently contains 34 relation types, more than 506,444 relations, 17 entity types, and more than 51,095 entities. The scale of HiDy is steadily growing due to its continuous updates. To make HiDy easily accessible and retrieved, HiDy is organized in a well-formed financial hierarchy with four branches, <em>Macro</em>, <em>Meso</em>,<em> Micro</em>, and<em> Others</em>.</p> <p>We then give explanations on the various csv files as follows.</p> <ul> <li>"hidy.nodes.entity_type.csv" includes a mapping dictionary of entities with a specific entity type. The meta data is ID, name, (code), Label. For example, "hidy.nodes.company.csv" includes "0,东诚药业,002675.SZ,company", "1,大庆华科,000985.SZ,company".</li> <li>"hidy.relationships.relation_type.csv" includes quadruple knowledge with a specific relation type. The meta data is START_ID, END_ID, TYPE, time. For example, "hidy.relationships.cooperate.csv" includes "2197,245,cooperate,2019/9/17 12:00, "1165,756,cooperate,2020/8/2 17:10".</li> </ul> <p>For details of HiDy, please refer to our <a href="https://github.com/K-Quant/HiDy">GitHub</a>.</p>
Dataset - Papyrus - A large scale curated dataset aimed at bioactivity predictions
<p><strong>Fixed version of additional_files:</strong></p> <p><strong>- In the previous version of 05.6_additional_files</strong> the data type of some descriptors was assigned incorrectly</p> <p><strong>- In this fixed version </strong>data types are correct </p> <p>This repository contains version 05.6 of the Papyrus dataset, an aggregated dataset of small molecule bioactivities, as described in the article "Papyrus - A large scale curated dataset aimed at bioactivity predictions" doi.org/10.1186/s13321-022-00672-x.</p> <p>Changes compared to version 05.5</p> <p>- applied small molecule filter that filters out compounds with a MW < 200 or > 800, heavy metal containing compounds and mixtures</p> <p>- include TID column which contains information on the original protein identifier</p>
Linked collectors and determiners for: Bumble bees collected in a large-scale field experiment in power line clearings, southeast Norway.
Natural history specimen data linked to collectors and determiners held within, "Bumble bees collected in a large-scale field experiment in power line clearings, southeast Norway". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/78822c79-7646-448d-aac2-35700498c147">https://bionomia.net/dataset/78822c79-7646-448d-aac2-35700498c147</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/78822c79-7646-448d-aac2-35700498c147">https://gbif.org/dataset/78822c79-7646-448d-aac2-35700498c147</a>. Formatted as a Frictionless Data package.
Code and data of "Uncovering disease-related multicellular pathway modules on large-scale single-cell transcriptomes with scPAFA"
<p>Code and data to reproduce the analyses and figures presented in "Uncovering disease-related multicellular pathway modules on large-scale single-cell transcriptomes with scPAFA"</p>
Making sense of large-scale kinase inhibitor bioactivity data sets: a comparative and integrative analysis
<p>We carried out a systematic evaluation of target selectivity profiles across three recent large-scale biochemical assays of kinase inhibitors and further compared these standardized bioactivity assays with data reported in the widely used databases ChEMBL and STITCH. Our comparative evaluation revealed relative benefits and potential limitations among the bioactivity types, as well as pinpointed biases in the database curation processes. Ignoring such issues in data heterogeneity and representation may lead to biased modeling of drugs' polypharmacological effects as well as to unrealistic evaluation of computational strategies for the prediction of drug-target interaction networks. Toward making use of the complementary information captured by the various bioactivity types, including IC50, K(i), and K(d), we also introduce a model-based integration approach, termed KIBA, and demonstrate here how it can be used to classify kinase inhibitor targets and to pinpoint potential errors in database-reported drug-target interactions. An integrated drug-target bioactivity matrix across 52,498 chemical compounds and 467 kinase targets, including a total of 246,088 KIBA scores, has been made freely available.</p> <p>Please cite: </p> <p>https://pubmed.ncbi.nlm.nih.gov/24521231/ </p> <p>https://pubs.acs.org/doi/10.1021/ci400709d</p>
Research Artefact: What network simulator questions do users ask? a large-scale study of stack overflow posts
<p><strong>Research Artefact: What network simulator questions do users ask? a large-scale study of stack overflow posts</strong></p> <p>This is a research artefact for the paper: <strong>What network simulator questions do users ask? a large-scale study of stack overflow posts</strong>. This artefact is a repository consisting of the collected dataset including 2,322 network-simulator-related Stack Overflow questions. This artefact aims to enable researchers to replicate our dataset of the paper and reuse the dataset for further research.</p>
Data for the manuscript entitled "Factors driving large-scale ungulate carrion production in the Anthropocene"
<p>Data for the article entitled "Factors driving large-scale ungulate carrion production in the Anthropocene". The data includes 5 main datasets, each of those corresponding to 5 main carrion production sources in terrestrial ecosystems in peninsular Spain, namely; 1) Livestock, 2) Big Game Hunting, 3) Roadkills, 4) Predation and 5) Natural mortality. </p> <p>In case of any doubt/s or enquiries regarding this data, please, send an email to the corresponding author; Jon Morant Etxebarria (email: jmorant@aranzadi.eus). </p> <p> </p>
Text-fig. 5. Fossil mammals from the Oligocene of Djebel Bou Gobrine, Tunisia, stored in the ONM Museum, El Charguia, Tunis. a–b) (?)Phiomia sp. maxilla containing parts of two upper molars (probably M1/ and M2/) (a – occlusal view, b – buccal view); c–d) anthracothere distal tibia in coarse sand matrix (c – plantar view, d – distal view) (all in scale). in Arsinoitherium (Embrithopoda) And Other Large Mammals And Plants From The Oligocene Of Tunisia
Text-fig. 5. Fossil mammals from the Oligocene of Djebel Bou Gobrine, Tunisia, stored in the ONM Museum, El Charguia, Tunis. a–b) (?)Phiomia sp. maxilla containing parts of two upper molars (probably M1/ and M2/) (a – occlusal view, b – buccal view); c–d) anthracothere distal tibia in coarse sand matrix (c – plantar view, d – distal view) (all in scale).
Text-fig. 41. Scanning electron microscope (SEM) images of monocolpate pollen of Piercipollis simplex gen. et sp. nov. from a pollen clump; Torres Vedras locality, Portugal. a) Holotype; pollen clump that yielded the pollen in this Text-figure; b–d) Pollen grains in distal (b), proximal (c) and lateral views (d) showing the very long colpus and the well-developed reticulum that is only loosely attached to the smooth surface of the foot layer; note the large angular lumina, smooth muri and short, sparsely scattered, columellae; note also that main body of pollen grains (foot layer) does not fill out the whole space of the reticulum; e) Reticulum showing the smooth muri loosely attached to the smooth surface of the foot layer by short, sparsely scattered, columellae. Specimen, TV44-S136755 (holotype). Scale bars 300 Μm (a), 6 Μm (b–d), 3 Μm (e). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 41. Scanning electron microscope (SEM) images of monocolpate pollen of Piercipollis simplex gen. et sp. nov. from a pollen clump; Torres Vedras locality, Portugal. a) Holotype; pollen clump that yielded the pollen in this Text-figure; b–d) Pollen grains in distal (b), proximal (c) and lateral views (d) showing the very long colpus and the well-developed reticulum that is only loosely attached to the smooth surface of the foot layer; note the large angular lumina, smooth muri and short, sparsely scattered, columellae; note also that main body of pollen grains (foot layer) does not fill out the whole space of the reticulum; e) Reticulum showing the smooth muri loosely attached to the smooth surface of the foot layer by short, sparsely scattered, columellae. Specimen, TV44-S136755 (holotype). Scale bars 300 Μm (a), 6 Μm (b–d), 3 Μm (e).
Text-fig. 22. Scanning electron microscope (SEM) images of fragmentary stamens (a, b) with in situ pollen of Clavatipollenites sp. 1 (c–g); Torres Vedras locality, Portugal. a, b) Fragmentary tetrasporangiate stamens; c–e) Distal view of pollen grains showing large, rounded aperture and the irregular verrucate aperture membrane; f) Proximal view of pollen grains showing dense reticulum; g) Section through the fractured pollen wall showing foot layer, columellae and muri with faint supratectal ornamentation. Specimens, TV44-S105013 (a, c, d), TV44-S105019 (b, e–g). Scale bars 300 Μm (a, b), 6 Μm (c–f), 3 Μm (g). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 22. Scanning electron microscope (SEM) images of fragmentary stamens (a, b) with in situ pollen of Clavatipollenites sp. 1 (c–g); Torres Vedras locality, Portugal. a, b) Fragmentary tetrasporangiate stamens; c–e) Distal view of pollen grains showing large, rounded aperture and the irregular verrucate aperture membrane; f) Proximal view of pollen grains showing dense reticulum; g) Section through the fractured pollen wall showing foot layer, columellae and muri with faint supratectal ornamentation. Specimens, TV44-S105013 (a, c, d), TV44-S105019 (b, e–g). Scale bars 300 Μm (a, b), 6 Μm (c–f), 3 Μm (g).
Text-fig. 18. Scanning electron microscope (SEM) images of a fruit of Canrightia sp. with associated pollen; Torres Vedras locality, Portugal. a) Fruit in lateral view showing prominent cavities in the fruit wall formed by the scattered oil bodies and the broad hypanthium fused to the base of the fruit (arrowhead); b) Fruit surface showing epidermal cells and the scattered oil cells embedded in the fruit wall (arrowheads); c) Cluster of monocolpate pollen grains in the probable stigmatic region of the fruit; d) Pollen grains showing the long colpus and semitectate-reticulate pollen wall; e) Pollen wall showing the reticulum with large and small lumina, and scattered, compressed columellae supporting the smooth muri. Specimen, TV142-S170213. Scale bars 300 Μm (a), 100 Μm (b), 30 Μm (c), 6 Μm (d), 1 Μm (e). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 18. Scanning electron microscope (SEM) images of a fruit of Canrightia sp. with associated pollen; Torres Vedras locality, Portugal. a) Fruit in lateral view showing prominent cavities in the fruit wall formed by the scattered oil bodies and the broad hypanthium fused to the base of the fruit (arrowhead); b) Fruit surface showing epidermal cells and the scattered oil cells embedded in the fruit wall (arrowheads); c) Cluster of monocolpate pollen grains in the probable stigmatic region of the fruit; d) Pollen grains showing the long colpus and semitectate-reticulate pollen wall; e) Pollen wall showing the reticulum with large and small lumina, and scattered, compressed columellae supporting the smooth muri. Specimen, TV142-S170213. Scale bars 300 Μm (a), 100 Μm (b), 30 Μm (c), 6 Μm (d), 1 Μm (e).
Text-fig. 19. ONHM TQ 15, right P4/ of a palaeomastodontoid from Taqah, Dhofar Governorate, Oman. a) stereo radicular view, b) stereo occlusal view (scale bar 10 mm). in Large Mammals From The Rupelian Of Oman - Recent Finds
Text-fig. 19. ONHM TQ 15, right P4/ of a palaeomastodontoid from Taqah, Dhofar Governorate, Oman. a) stereo radicular view, b) stereo occlusal view (scale bar 10 mm).
Text-fig. 18. Barytherium sp. from Dor el Talha, Libya. a) MNHN LBE 13, right upper premolar, stereo occlusal views (scale bar 1 cm) and b) MNHN LBE 004, right mandible containing m/2 and m/3 (b1 – stereo occlusal views, b2 – lingual view) (scale bar 5 cm). in Large Mammals From The Rupelian Of Oman - Recent Finds
Text-fig. 18. Barytherium sp. from Dor el Talha, Libya. a) MNHN LBE 13, right upper premolar, stereo occlusal views (scale bar 1 cm) and b) MNHN LBE 004, right mandible containing m/2 and m/3 (b1 – stereo occlusal views, b2 – lingual view) (scale bar 5 cm).
Text-fig. 17. Upper molars of a) Barytherium sp. and b) Arcanotherium savagei from Dor el Talha, Libya. a) stereo occlusal view of MNHN LBE 002, left maxilla containing M2/ and M3/, b) stereo occlusal view of MNHN LBE 020, left M3/ (scale bar 5 cm). in Large Mammals From The Rupelian Of Oman - Recent Finds
Text-fig. 17. Upper molars of a) Barytherium sp. and b) Arcanotherium savagei from Dor el Talha, Libya. a) stereo occlusal view of MNHN LBE 002, left maxilla containing M2/ and M3/, b) stereo occlusal view of MNHN LBE 020, left M3/ (scale bar 5 cm).
Text-fig. 15. NHMUK 17/2189, upper left central incisor (probably female) of Barytherium from Dor el Talha, Libya. a) mesial, b) lingual, c) labial, d) distal views (scale bar 10 cm). in Large Mammals From The Rupelian Of Oman - Recent Finds
Text-fig. 15. NHMUK 17/2189, upper left central incisor (probably female) of Barytherium from Dor el Talha, Libya. a) mesial, b) lingual, c) labial, d) distal views (scale bar 10 cm).
Text-fig. 12. Lower molars of (a) Omanitherium dhofarense and (b) Moeritherium chehbeurameuri. a) stereo occlusal views of ONHM TN 2017-50, posterior lophid of an unworn right lower molar, probably m/2, from Mohammed's molar site, Dhofar, Oman, b) stereo occlusal views of MNHN 1890-14, left lower molar from "Khenchella", Algeria (note the longitudinal sulcus in the centre-line of the tooth of Moeritherium and its absence in Omanitherium). Arrows show the course of the sulcus in the molar from "Khenchella" (scale bar 10 mm). in Large Mammals From The Rupelian Of Oman - Recent Finds
Text-fig. 12. Lower molars of (a) Omanitherium dhofarense and (b) Moeritherium chehbeurameuri. a) stereo occlusal views of ONHM TN 2017-50, posterior lophid of an unworn right lower molar, probably m/2, from Mohammed's molar site, Dhofar, Oman, b) stereo occlusal views of MNHN 1890-14, left lower molar from "Khenchella", Algeria (note the longitudinal sulcus in the centre-line of the tooth of Moeritherium and its absence in Omanitherium). Arrows show the course of the sulcus in the molar from "Khenchella" (scale bar 10 mm).
Text-fig. 11. Upper and lower incisors of Omanitherium dhofarense. a) ONHM TN 2017-51, right i/1 from Mohammed's molar site (a1 – mesial view, a2 – stereo labial view, a3 – stereo lingual view, a4 – distal view, a5 – apical view, a6 – mesial view of tooth occluded with the I1/); b) ONHM TH 6, from Thaytiniti (b1 – lingual view, b2 – mesial view of tooth occluded with the i/1) (scale bar 10 mm). in Large Mammals From The Rupelian Of Oman - Recent Finds
Text-fig. 11. Upper and lower incisors of Omanitherium dhofarense. a) ONHM TN 2017-51, right i/1 from Mohammed's molar site (a1 – mesial view, a2 – stereo labial view, a3 – stereo lingual view, a4 – distal view, a5 – apical view, a6 – mesial view of tooth occluded with the I1/); b) ONHM TH 6, from Thaytiniti (b1 – lingual view, b2 – mesial view of tooth occluded with the i/1) (scale bar 10 mm).
Text-fig. 16. a) MNHN LBE 007, symphysis with left and right i/1 of Barytherium sp. from Dor el Talha, Libya. (a1 – superior stereo views of the symphysis, a2 – stereo distal view of right i/1 (arrow 1 shows the interstitial contact facet close to the apex caused by abrasion against the right i/2), a3 – section of right i/1 viewed from the radicular end to show the extent of the enamel cover (below the arrows 2) and the dome-shaped dentine mass on the lingual aspect (above the arrows), a4 – stereo occlusal views of right i/1 (note the orientation of the apical wear facet), a5 – stereo mesial view) (scale bar 5 cm); b–c) NHMUK M 82167b, distal stereo views of lower central incisors of Arcanotherium savagei from Dor el Talha, Libya, to show the interstitial wear facets near cervix caused by abrasion against the i/2s (b – left i/1, c – right i/1) (scale bar 10 cm). in Large Mammals From The Rupelian Of Oman - Recent Finds
Text-fig. 16. a) MNHN LBE 007, symphysis with left and right i/1 of Barytherium sp. from Dor el Talha, Libya. (a1 – superior stereo views of the symphysis, a2 – stereo distal view of right i/1 (arrow 1 shows the interstitial contact facet close to the apex caused by abrasion against the right i/2), a3 – section of right i/1 viewed from the radicular end to show the extent of the enamel cover (below the arrows 2) and the dome-shaped dentine mass on the lingual aspect (above the arrows), a4 – stereo occlusal views of right i/1 (note the orientation of the apical wear facet), a5 – stereo mesial view) (scale bar 5 cm); b–c) NHMUK M 82167b, distal stereo views of lower central incisors of Arcanotherium savagei from Dor el Talha, Libya, to show the interstitial wear facets near cervix caused by abrasion against the i/2s (b – left i/1, c – right i/1) (scale bar 10 cm).
Text-fig. 8. Lower teeth of Arsinoitherium andrewsi from the Omanitherium type locality, Ashawq Formation, Oman. a) ONHM TN 2017-03, right m/3, (a1 – stereo buccal view, a2 – stereo occlusal view); b) ONHM TN 2017-04, right p/2 (b1 – stereo buccal view, b2 – stereo occlusal view); c) ONHM TN 2017-06, right p/4 (c1 – stereo buccal view, c2 – stereo occlusal view) (scale bar 10 mm). in Large Mammals From The Rupelian Of Oman - Recent Finds
Text-fig. 8. Lower teeth of Arsinoitherium andrewsi from the Omanitherium type locality, Ashawq Formation, Oman. a) ONHM TN 2017-03, right m/3, (a1 – stereo buccal view, a2 – stereo occlusal view); b) ONHM TN 2017-04, right p/2 (b1 – stereo buccal view, b2 – stereo occlusal view); c) ONHM TN 2017-06, right p/4 (c1 – stereo buccal view, c2 – stereo occlusal view) (scale bar 10 mm).
Text-fig. 14. Upper cheek teeth of Omanitherium dhofarense. a) ONHM TN 2017-16, left P3/, stereo occlusal view; b) ONHM TN 2017-17, right P4/, stereo occlusal view; c) ONHM TN 2017-44, right P4/, stereo occlusal view; d) ONHM TN 2017-18, right M1/ stereo occlusal view; e and f) ONHM TN 2017-45, fragments of left M2/, stereo occlusal view; g) ONHM TN 2017-79, right M3/, stereo occlusal view (scale bar 10 mm). in Large Mammals From The Rupelian Of Oman - Recent Finds
Text-fig. 14. Upper cheek teeth of Omanitherium dhofarense. a) ONHM TN 2017-16, left P3/, stereo occlusal view; b) ONHM TN 2017-17, right P4/, stereo occlusal view; c) ONHM TN 2017-44, right P4/, stereo occlusal view; d) ONHM TN 2017-18, right M1/ stereo occlusal view; e and f) ONHM TN 2017-45, fragments of left M2/, stereo occlusal view; g) ONHM TN 2017-79, right M3/, stereo occlusal view (scale bar 10 mm).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.