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11,869 results for “metabolic”
Figure 3 in Photosynthetic metabolism and antioxidant in Ormosia arborea are modulated by abscisic acid under water deficit?
Figure 3. Water potential (Ψw) (A) and Potential efficiency quantum of photosystem II (Fv/Fm) (B) as a function of the evaluation periods between irrigated seedlings (I) of Ormosia arborea (I and I 10 µM ABA) and submitted to the water deficit condition (SI and SI 10 µM ABA). Lowercase letters compare the different treatments in the same evaluation period and uppercase letters compare the same treatment in the different evaluation periods.
Figure 6 in Photosynthetic metabolism and antioxidant in Ormosia arborea are modulated by abscisic acid under water deficit?
Figure 6. Enzymatic activity of superoxide dismutase in leaves (SOD Leaves) (A) and roots (SOD roots) (B) of Ormosia arborea seedlings irrigated (I and I 10 µM ABA) and submitted to water deficit conditions (SI and SI 10 µM ABA) in the different evaluation periods: zero time (T0), first null photosynthesis (1st P0), second null photosynthesis (2nd P0), recovery (REC) and final evaluation (END). Upper case letters differ between trial times and lowercase letters between treatments.
Unveiling Pathophysiological Insights: Serum Metabolic Dysregulation in Acute Respiratory Distress Syndrome Patients with Acute Kidney Injury
<p>The uploaded data is an Excel sheet obtained after performing the binning of 1H CPMG NMR spectra acquired using 800 MHz NMR on the serum samples of ARDS patients and ARDS with AKI patients. </p>
Shifting metabolic priorities among key protistan taxa within and below the euphotic zone
<p>Dataset for submitted publication: <strong>Sarah K. Hu</strong>, Zhenfeng Liu, Harriet Alexander, Victoria Campbell, Paige Connell, Karla B. Heidelberg, Sonya Dyhrman, & David A. Caron. <em>Shifting metabolic priorities among key protistan taxonomic groups within and below the euphotic zone.</em> <strong>In press.</strong> Environmental Microbiology. <a href="https://doi.org/10.1111/1462-2920.14259">https://doi.org/10.1111/1462-2920.14259</a></p> <p>See associated GitHub repository: https://github.com/shu251/SPOT_metatranscriptome</p> <p><strong>Abstract</strong></p> <p>A metatranscriptome study targeting the protistan community was conducted off the coast of Southern California, at the San Pedro Ocean Time-series station at the surface, 150 m (oxycline), and 890 m to link putative metabolic patterns to distinct protistan lineages. Comparison of relative transcript abundances revealed depth-related shifts in the nutritional modes of key taxonomic groups. Eukaryotic gene expression in the sunlit surface environment was dominated by phototrophs, such as diatoms and chlorophytes, and high abundances of transcripts associated with synthesis pathways (e.g. photosynthesis, carbon fixation, fatty acid synthesis). Sub-euphotic depths (150 m and 890 m) exhibited strong contributions from dinoflagellates and ciliates, and were characterized by transcripts relating to digestion or intracellular nutrient recycling (e.g. breakdown of fatty acids and V-type ATPases). These transcriptional patterns underlie the distinct nutritional modes of ecologically important protistan lineages that drive marine food webs, and provide a framework to investigate trophic dynamics across diverse protistan communities.</p> <p>Most recent version - March 16, 2018</p>
Flexible nitrogen utilisation by the metabolic generalist pathogen Mycobacterium tuberculosis
<p>Data on uptake and metabolism of all 20 amino acids by Mycobacterium tuberculosis H37Rv (20 amino acids uptake.zip), shown in Figure 2.</p> <p>Data on kinetics of labelling on 15N-Asp (15N Asp.zip), shown in Figure 4g and h.</p> <p>Data on kinetics of labelling on 15N2-Asn (15N Asn.zip), shown in Figure 4g and h.</p> <p>Data on kinetics of labelling on 15N-Glu (15N Glu.zip), shown in Figure 4g and h.</p> <p>Data on kinetics of labelling on 15N2-Gln (15N Gln.zip), shown in Figure 4g and h.</p> <p>Data on kinetics of labelling on 15N-NH4+ (15N NH4+.zip), shown in Figure 4g and h.</p> <p>Data on position specific labelling with Asn and Gln (PIL.zip), shown in Figure 4b to f.</p> <p>Data on co-metabolism of Glu/Gln and Asp/Asn (co-metabolism.zip), shown in Figure 5.</p>
Data for the "Systematic mapping of protein-metabolite interactions in central metabolism of Escherichia coli"
<p>This dataset contains raw and processed NMR data used in the publication.</p>
Sleep problems are a strong predictor of stress-related metabolic changes in police officers. A prospective study
<p>Data used for a prospective study on occupational stress, sleep problems and metabolic syndrome in a sample of police officers, Italy, 2009-2014. Paper submitted to PLoS One, waiting for a decision.</p>
Details of offspring and source data for analysis of metabolic health and dietary preference in a rat model of acute alcohol exposure.
<p>This Excel file contains information on the number of offspring used to examine each outcome and the raw data for each data Table and Figure within a manuscript submitted to Journal of Physiology. </p>
Figure 3 in Effects of Ni (II) p-hydroxybenzoate with caffeine on metabolic, antioxidant, and biochemical parameters of model insect Galleria mellonella L. (Lepidoptera: Pyralidae)
Figure 3. Effects of Ni (II) p-hydroxybenzoate with caffeine on ion levels of Galleria mellonella. Bars represent the means (± SD) of four replicates. Means followed by the same letter are not significantly different (p> 0.05).
Figure 1 in Effects of Ni (II) p-hydroxybenzoate with caffeine on metabolic, antioxidant, and biochemical parameters of model insect Galleria mellonella L. (Lepidoptera: Pyralidae)
Figure 1. Effects of Ni (II) p-hydroxybenzoate with caffeine on metabolic enzyme activity of Galleria mellonella. Bars represent the means (±SD) of four replicates. Means followed by the same letter are not significantly different (p> 0.05).
The data for: What can be lost? Genomic perspective on the lipid metabolism of Mucoromycota
<div> <h3><a href="https://static-content.springer.com/esm/art%3A10.1186%2Fs43008-023-00127-4/MediaObjects/43008_2023_127_MOESM1_ESM.xlsx"><strong>Additional file 1:</strong></a></h3> <div> <p>Spreadsheet with gene names, protein accessions and list of analysed fungal assemblies.</p> </div> </div> <div> <h3><a href="https://static-content.springer.com/esm/art%3A10.1186%2Fs43008-023-00127-4/MediaObjects/43008_2023_127_MOESM2_ESM.txt"><strong>Additional file 2:</strong></a></h3> <div> <p>Phylogenetic trees of all proteins.</p> </div> </div>
Hepatic transcriptomic analysis reveals differential regulation of metabolic and immune pathways in three strains of chickens with distinct growth rate exposed to mixed parasites infections
<p><span>This dataset was generated from the study investigating hepatic gene expression in three strains of chickens: Ross-308 (R), Lohmann Brown Plus (LB), and Lohmann Dual (LD), 2 weeks after either an experimental infection (n = 18) with both <em>A. galli</em> and <em>H. gallinarum or kept as uninfected control (n = 12)</em>. </span></p>
Merging metabolomics and genomics provides a catalog of genetic factors that infuence molecular phenotypes in pigs linking relevant metabolic pathways
<h3>Content</h3> <p>Metabolites included in the study. Summary statistics of metabolite levels for the Large White and Duroc pig populations are provided.</p>
Metabolic pathway prediction using non-negative matrix factorization with improved precision
<p>We include samples of various data types used in the work "Metabolic pathway prediction using non-negative matrix factorization with improved precision"</p> <p>More information about the software package and instructions are provided in <a href="https://github.com/hallamlab/triUMPF">hallamlab/triUMPF</a></p>
Larval nutrition impacts survival to adulthood, body size, and the allometric scaling of metabolic rate in adult honeybees
<p>Resting metabolic rate (RMR) is a fundamental physiological measure linked to numerous aspects of organismal function, including lifespan. Although dietary restriction in insects during larval growth/development affects adult RMR, the impact of larval diet <i>quality</i> on adult RMR has not been studied. Using <i>in vitro</i> rearing to control larval diet quality, we determined the effect of dietary protein and carbohydrate on honeybee survival-to-adulthood, time-to-eclosion, body mass/size and adult RMR. High carbohydrate larval diets increased survival-to-adulthood and time-to-eclosion compared to both low carbohydrate and high protein diets. Upon emergence, bees reared on the high protein diet were smaller and lighter than those reared on other diets, whilst those raised on the high carbohydrate diet varied more in body mass. Newly emerged adult bees' reared on the high carbohydrate diet showed a significantly steeper increase in allometric scaling of RMR compared to those reared on other diets. This suggests that diet quality influences survival-to-adulthood, time-to-eclosion, and the allometric scaling of RMR. Given that agricultural intensification and increasing urbanisation have led to a decrease in both forage availability and dietary diversity for bees, our results are critical to improving understanding of the impacts of poor developmental nutrition on bee growth/development and physiology.</p>
Dataset for "Diets supplemented with Saccharina latissima influence the expression of genes related to lipid metabolism and oxidative stress modulating rainbow trout (Oncorhynchus mykiss) fillet composition" (doi.org/10.1016/j.fct.2020.111332)
<p>Dataset corresponding to the following article:</p> <p>Ferreira, M., Larsen, B.K., Granby, K., Cunha, S.C., Monteiro, C., Fernandes, J.O., Nunes, M.L., Marques, A., Dias, J., Cunha, I., Castro, L.F.C., Valente, L.M.P., 2020. Diets supplemented with <em>Saccharina latissima </em>influence the expression of genes related to lipid metabolism and oxidative stress modulating rainbow trout (<em>Oncorhynchus mykiss</em>) fillet composition. Food Chem. Toxicol. 140, 111332. <a href="https://doi.org/10.1016/j.fct.2020.111332">https://doi.org/10.1016/j.fct.2020.111332</a></p>
The role of polyphosphates in the metabolism of multicellular cable bacteria
<p>Datasets used for chapter 5 of the PhD thesis of N.M.J. Geerlings. The ecophysiology of multicellular cable bacteria:<br> insights from single cell imaging techniques</p> <p>Dataset 1: document (.dac) with the 18O atom fraction for each region of interest defined as a poly-P granule. These values were used for Model 1 and to construct figure 5.5 A-C. </p> <p>Dataset 2: document (.dac) with the 18O atom fraction of each region of interest defined as a poly-P granule and the corresponding 13C atom fraction of the cytoplasm. These fractions are only determined for the nanoSIMS data where the 12C14N- ion count was measured correctly. These values were used for Model 2 and to construct figure 5.6 and A5.3A-B. </p>
The genome of a nonphotosynthetic diatom provides insights into the metabolic shift to heterotrophy and constraints on the loss of photosynthesis
<p>Data associated with: Onyshchenko et al. 2021. <a href="https://doi.org/10.1111/nph.17673">The genome of a nonphotosynthetic diatom provides insights into the metabolic shift to heterotrophy and constraints on the loss of photosynthesis</a>. New Phytologist.</p> <p>Contents include:</p> <ul> <li><em>Nitzschia</em> Nitz4 genome sequence and annotation</li> <li>OrthoFinder inputs and outputs</li> <li>CAFE inputs and outputs</li> <li>Transcriptome assemblies</li> <li>Variant calling results</li> </ul> <p>Use the command `tar -zxvf nitzschia.tgz` to unpack the archive.</p>
Figure 2 in Body size in proboscideans, with notes on elephant metabolism
Figure 2. The best hindlimb predictors of body mass in Elephas maximus and Loxodonta africana. The y-axis in all cases is log body mass. (A) Log femur length; (B) log femur diaphysial anteroposterior diameter; (C) log femur lateral condyle width; (D) log tibia length; (E) log tibia least circumference; (F) log fibula least circumference. For regression statistics see Table 4.
Figure 1 in Body size in proboscideans, with notes on elephant metabolism
Figure 1. The best forelimb predictors of body mass in Elephas maximus and Loxodonta africana. The y-axis in all cases is log body mass. (A) Log humerus length; (B) log humerus least circumference; (C) log humerus diaphysis anteroposterior diameter; (D) log radius length; (E) log ulna length; (F) log ulna least circumference. For regression statistics see Table 3.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.