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278
datasets available to search
ShareScore release 0.9.0
Dataset results
278 results for “metabolic modeling”
single-cell RNAseq data (data set 13) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset13) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from pancreas donor11 downloaded from the GEO website (<strong>GSE114297). </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: <a href="https://github.com/sysbiolux/scFASTCORMICS">https://github.com/sysbiolux/scFASTCORMICS</a></p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 10) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset10) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from pancreas donor8 downloaded from the GEO website (<strong>GSE114297). </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: https://github.com/sysbiolux/scFASTCORMICS</p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 6) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset6) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from pancreas donor4 downloaded from the GEO website (<strong>GSE114297). </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: <a href="https://github.com/sysbiolux/scFASTCORMICS">https://github.com/sysbiolux/scFASTCORMICS</a></p> <p>For more information, version updates of the scFASTCORMICS. </p>
single-cell RNAseq data (data set 2) in the publication scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data
<p>The present dataset (dataset2) was used as input to build scFASTCORMICS models. The files correspond to the clusters identified by Seurat in the single-cell data from normal mucosa samples downloaded from the GEO website (<strong>GSE81861). </strong></p> <p>see the protocol: scFASTCORMICS: A contextualization algorithm to reconstruct metabolic multi-cell population models from single-cell RNAseq data</p> <p>and github: https://github.com/sysbiolux/scFASTCORMICS</p> <p>For more information, version updates of the scFASTCORMICS. </p>
Exploring the Effects of Varying Fat:Carbohydrate Diet Permutations on Gastric Emptying and Metabolic Status Using Human Postprandial Model
ClinicalTrials.gov study NCT05977244. IPD Sharing: NO. Countries: 1. Publications: 0.
Metabolic Dysfunction-Associated Fatty Liver Disease Impairs Intraoperative Indocyanine Green Fluorescence Cholangiography Quality: Development and Validation of a Predictive Model
ClinicalTrials.gov study NCT07297225. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Utilizing a Promotora Model for Rural Adult Hispanics Diagnosed With Metabolic Syndrome: A Clinical Trial
ClinicalTrials.gov study NCT01839864. IPD Sharing: NO. Countries: 1. Publications: 0.
Establishment of a Classification System and Postoperative Risk Warning Model for Patients Undergoing Bariatric Metabolic Surgery for Severe Obesity
ClinicalTrials.gov study NCT07093502. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
CYP3A4 Metabolism Before and After Surgery Induced Weight Loss Using Midazolam as Model Drug
ClinicalTrials.gov study NCT01519726. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Metabolic Profiling in Patients With Obstructive Sleep Apnea: From Plasma to Hypoxic Cell Model of Peripheral Monocyte
ClinicalTrials.gov study NCT02130050. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease
GEO Series GSE138379. Homo sapiens. 96 samples. Type: Expression profiling by high throughput sequencing.
Paternal malnutrition programs offspring’s breast cancer risk and tumor metabolism in a mouse model (MBD-seq)
GEO Series GSE114422. Mus musculus. 11 samples. Type: Methylation profiling by high throughput sequencing.
Regulation of metabolic and transcriptional responses by the Thyroid Hormone in cellular models of murine macrophages
GEO Series GSE200718. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
The major urinary protein gene cluster knockout mouse as a novel model for translational metabolism research [RNAseq]
GEO Series GSE188156. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
iPSC data for the paper "Correction of dysregulated lipid metabolism normalizes gene expression in oligodendrocytes and prolongs lifespan in female poly-GA C9orf72 mouse model"
GEO Series GSE285209. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
Metabolic Characterization of Patient-derived Xenograft Models of Clear Cell Renal Cell Carcinoma Transcriptomic Analysis
GEO Series GSE213857. Homo sapiens. 47 samples. Type: Expression profiling by high throughput sequencing.
A gene expression-based model to predict metabolic response after two courses of ABVD in patients with classical Hodgkin Lymphoma
GEO Series GSE132348. Homo sapiens. 106 samples. Type: Expression profiling by array.
Dietary amino acid source elicits sex-specific metabolic response to diet-induced NAFLD in murine model.
GEO Series GSE234591. Mus musculus. 64 samples. Type: Expression profiling by array.
P450 oxidoreductase (POR) Regulates Barrier Maturation by Mediating Retinoic Acid Metabolism in a Model of the Human BBB
GEO Series GSE202485. Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing.
Paternal malnutrition programs offspring’s breast cancer risk and tumor metabolism in a mouse model (small RNA-seq)
GEO Series GSE114421. Mus musculus. 16 samples. Type: Non-coding RNA profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.