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7,327 results for “pathways”
FIGURE 2 in Tracking the evolutionary pathways among Brazilian Lebiasina species (Teleostei: Lebiasinidae): a chromosomal and genomic comparative investigation
FIGURE 2 | Male and female karyotypes of Lebiasina minuta after A. Giemsa staining, B. C-banding, and C. "double-FISH" with 5S (red) and 18S (green) rDNA probes. Scale bar = 5 µm.
FIGURE 1 in Tracking the evolutionary pathways among Brazilian Lebiasina species (Teleostei: Lebiasinidae): a chromosomal and genomic comparative investigation
FIGURE 1 | Distribution of Lebiasina species with available cytogenetic data, highlighting the Brazilian state of Pará (orange) and Ecuadorian (purple) territories A. 1. L. bimaculata, 2. L. melanoguttata (Sassi et al., 2019), and 3. L. minuta (this study). B. Highlights the position of A in South America, and C. indicates that, although close, species 2 and 3 does not share an overlapped distribution.
Output pathway data for "Income and inequality pathways consistent with eradicating poverty"
<p>This is a dataset presenting GDP and Gini pathways developed for the publication of our article "Income and inequality pathways consistent with eradicating poverty" (forthcoming at ERL) under the SHAPE project (Sustainable development pathways achieving Human well-being while safeguarding the climate And Planet Earth).</p> <p>More info about the SHAPE project is <a href="https://shape-project.org/">here</a>.</p>
Species introductions cause phylogenetically structured successional pathways in natural wood-inhabiting fungal communities
<p>These files include the data and the scripts for reproducing the results presented in the manuscript "Species introductions cause phylogenetically structured successional pathways in natural wood-inhabiting fungal communities".</p> <p>Description of the files can be found from the README.docx file.</p>
Hepatic transcriptomic analysis reveals differential regulation of metabolic and immune pathways in three strains of chickens with distinct growth rate exposed to mixed parasites infections
<p><span>This dataset was generated from the study investigating hepatic gene expression in three strains of chickens: Ross-308 (R), Lohmann Brown Plus (LB), and Lohmann Dual (LD), 2 weeks after either an experimental infection (n = 18) with both <em>A. galli</em> and <em>H. gallinarum or kept as uninfected control (n = 12)</em>. </span></p>
Code and data of "Uncovering disease-related multicellular pathway modules on large-scale single-cell transcriptomes with scPAFA"
<p>Code and data to reproduce the analyses and figures presented in "Uncovering disease-related multicellular pathway modules on large-scale single-cell transcriptomes with scPAFA"</p>
Merging metabolomics and genomics provides a catalog of genetic factors that infuence molecular phenotypes in pigs linking relevant metabolic pathways
<h3>Content</h3> <p>Metabolites included in the study. Summary statistics of metabolite levels for the Large White and Duroc pig populations are provided.</p>
The data for Non-Dikarya fungi share the TORC1 pathway with animals, not with yeasts
<p>This dataset provides all the raw data used in the<strong> Non-Dikarya fungi share the TORC1 pathway with animals, not with yeasts </strong>manuscript including:</p> <p><strong>Supplementary file S1<br></strong></p> <p>All protein identifiers, genomic assemblies, transcriptomic datasets </p> <p><strong>Supplementary file S2<br></strong></p> <p>The figures of phylogenetic trees for TORC1 proteins.</p> <p><strong>Supplementary Dataset SD1.</strong></p> <p>The phylogenetic trees for TORC1 proteins</p> <p><strong>HMM profiles</strong> for EGO1 EGO2 EGO3 and Tco89 proteins</p> <p>This work was supported by National Science Centre grants (#2021/41/B/NZ2/02426 to A.M.)</p>
3D structures along the reaction pathways of GTP hydrolysis by Arl3-RP2
<p>PDB files of 3D structures along the reaction pathways of GTP hydrolysis by Arl3-RP2 with the reaction coordinate values close to those obtained for minima and transitions states during the umbrella integration analysis of the reaction coordinate distributions.</p> <p>The filename includes the name of the minimum / transition state along the reaction path and the theory level.</p>
Metabolic pathway prediction using non-negative matrix factorization with improved precision
<p>We include samples of various data types used in the work "Metabolic pathway prediction using non-negative matrix factorization with improved precision"</p> <p>More information about the software package and instructions are provided in <a href="https://github.com/hallamlab/triUMPF">hallamlab/triUMPF</a></p>
transynergy: synergistic prediction and pathway deconvolution of drug combinations
<p>Dataset used for transynergy: synergistic prediction and pathway deconvolution of drug combinations</p>
In Vitro Reconstitution of a Five-Step Pathway for Bacterial Ergothioneine Catabolism
<p>Data underlying the figures in the publication “In Vitro Reconstitution of a Five-Step Pathway for Bacterial Ergothioneine Catabolism”, published in <em>ACS Chem. Biol.,</em> <strong>2021</strong>, 16, 2, 397–403.</p> <p><a href="https://pubs.acs.org/doi/10.1021/acschembio.0c00968">https://pubs.acs.org/doi/10.1021/acschembio.0c00968</a></p> <p>Table of contents:</p> <p><strong>1. Table 1</strong>; Text document containing the Michaelis - Menten kinetic data for thiourocaate hydratase, obtained with UV-Vis spectrophotometer as described in the supporting information of the publication.</p> <p><strong>2. Figure 3</strong>; Text document containing the numerical data for <em>Figure 3</em>: Reverse phase HPLC traces (wavelength 220 nm) for each metabolite in ergothioneine degradation pathway.</p> <p><strong>3. Figure 4</strong>; Data and model validation report of X-ray crystallography diffraction data of thiouricanate hydratase collected at the swiss light source at 100K. Data processed and refined according to standard procedure.</p>
Data and scripts from "Congruent trophic pathways underpin global coral reef food webs"
<p>Ecological interactions uphold ecosystem structure and functioning. However, as species richness increases, the number of possible interactions rises exponentially. More than 6,000 species of coral reef fishes exist across the world’s tropical oceans, resulting in an almost innumerable array of possible trophic interactions. Distilling general patterns in these interactions across different bioregions stands to improve our understanding of the processes that govern coral reef functioning. Here, we show that across bioregions, tropical coral reef food webs exhibit a remarkable congruence in their trophic interactions. Specifically, by compiling and investigating the structure of six coral reef food webs across distinct bioregions, we show that when accounting for consumer size and resource availability, these food webs share more trophic interactions than expected by chance. In addition, coral reef food webs are dominated by dietary specialists, which makes trophic pathways vulnerable to biodiversity loss. Prey partitioning among these specialists is geographically consistent, and this pattern intensifies when weak interactions are disregarded. Our results suggest that energy flows through coral reef communities along broadly comparable trophic pathways. Yet, these critical pathways are maintained by species with narrow, specialized diets, which threatens the existence of coral reef functioning in the face of biodiversity loss.</p>
Figure 5 in Fasciole pathways in spatangoid echinoids: a new source of phylogenetically informative characters
Figure 5. Agassizia scrobiculata (Valenciennes, 1846). Camera lucida plating diagrams of oral, apical, lateral and posterior surfaces. Fascioles are shown as densely stippled bands. Length of test 35 mm.
Figure 4 in Fasciole pathways in spatangoid echinoids: a new source of phylogenetically informative characters
Figure 4. Protenaster australis (Gray, 1851). Camera lucida plating diagrams of oral, apical and posterior surfaces. Fascioles are shown as densely stippled bands. Length of test 63 mm.
Figure 1 in Fasciole pathways in spatangoid echinoids: a new source of phylogenetically informative characters
Figure 1. Aboral surface of the test of Brissus unicolor (Leske, 1778) (NHM 39.3.29.38). The peripetalous fasciole shows up clearly as a narrow dark band (arrowed). Length of test 50 mm.
Figure 2 in Fasciole pathways in spatangoid echinoids: a new source of phylogenetically informative characters
Figure 2. Test of Ova lacunosus (L., 1758) (NHM 81.11.22.39) in A, apical, and B, lateral views. The peripetalous (pp) and lateroanal (la) fascioles stand out as paler bands of fine tuberculation. Note the highly angular pathway and variable thickness of the fascioles, with angles coincident with the growth centres (o) of individual plates. Plates labelled according to Loven's system (see text for details).
Figure 7 in Fasciole pathways in spatangoid echinoids: a new source of phylogenetically informative characters
Figure 7. Meoma ventricosa (Lamarck, 1816). Camera lucida plating diagrams of oral and apical surfaces. Fascioles are shown as densely stippled bands. Length of test 119 mm.
Figure 3 in Fasciole pathways in spatangoid echinoids: a new source of phylogenetically informative characters
Figure 3. Fasciole pathways in Eupatagus valenciennesi (Agassiz & Desor, 1847). Camera lucida plating diagrams of oral, apical and posterior surfaces. Fascioles are shown as densely stippled bands. Interambulacral plates are numbered according to Loven's system and shaded grey. Ambulacral zones are unshaded.
Figure 8 in Fasciole pathways in spatangoid echinoids: a new source of phylogenetically informative characters
Figure 8. Camera lucida plating diagrams indicating fasciole pathways for: A, Lovenia elongata (Gray 1845), length of test 61 mm; B, Gualtieria orbignyana (Agassiz & Desor, 1847), length of test 39 mm.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.