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Real Time Integration Center of Mass (riCOM) Reconstruction for 4D-STEM
<p>The datasets are a part of the publication: <strong>Real Time Integration Center of Mass (riCOM) Reconstruction for 4D-STEM</strong></p>
Real-space imaging of phase transitions in bridged artificial kagome spin ice
<p>Open data to "Real-space imaging of phase transitions in bridged artificial kagome spin ice", published in Nature Physics (2022), https://www.nature.com/articles/s41567-022-01564-5</p>
Development of thrips barcode database and multiplex real-time PCR assay for quarantine and agriculture pest species
<p>Thrips (Order Thysanoptera) species are agriculturally important as plant sap sucking pests and vectors of several plant diseases. They are very small insects and commonly associated with imported commodities at New Zealand border in all life stages. Morphological identification of thrips is mainly performed on adults, but the available identification keys for immature stages do not include many species and are inadequate, thus DNA barcode was regularly used for thrips identification, here, we have generated DNA barcode data for over 29 thrips species from over 100 individuals. At New Zealand border,<em> Frankliniella occidentalis </em>is the dominant species intercepted, followed by <em>F. panamensis</em>, <em>Thrips palmi</em> and <em>T. tabaci </em>and several other thrips species. Hence, we have also developed a multiplex real time PCR assay, targeting the four thrips species to facilitate the identification of quarantine interceptions with more accurate and faster diagnostic method for any developmental stages. The DNA barcode database further assists in thrip identification. The assay showed high specificity for all the four target species and could detect 10 copies/ µL of the target DNA. Linear responses and high correlation coefficients between the amount of DNA and <em>C</em><sub>q</sub> values for each species were also achieved. The method was tested on single egg, larva and adult and proved to be applicable for all life stages of the four species. This study has demonstrated the assay is a useful biosecurity tool for rapid and reliable identification of the target thrips species. </p>
A Study of Real-world Data Races in Golang (Artifact)
<p>The concurrent programming literature is rich with tools and techniques for data race detection. Less, however, has been known about real-world, industry-scale deployment, experience, and insights about data races. Golang (Go for short) is a modern programming language that makes concurrency a first-class citizen. Go offers both message passing and shared memory for communicating among concurrent threads. Go is gaining popularity in modern microservice-based systems. Data races in Go stand in the face of its emerging popularity.</p> <p>In this paper, using our industrial codebase as an example, we demonstrate that Go developers embrace concurrency and show how the abundance of concurrency alongside language idioms and nuances make Go programs highly susceptible to data races. <br> Google's Go distribution ships with a built-in dynamic data race detector based on ThreadSanitizer. Dynamic race detectors pose scalability and flakiness challenges; we discuss various software engineering trade-offs to scale this detector to work effectively at scale.</p> <p>We have deployed this detector in our 50-million lines of Go codebase hosting 2100 distinct microservices, found over 2000 data races, fixed over 1000 data races, spanning 790 distinct code patches submitted by 210 unique developers over a six-month period. Based on a detailed investigation of these data race patterns in Go, we make seven high-level observations relating to the complex interplay between the Go language paradigm and data races. </p>
Migrating birds real flight V-formation spatial configuration.
<p>Bird real flight V-formation dataset: Arbitrary (pixel) coordinates of migrating birds, probably Geese, flying in V-formation. Photo is taken in an angle so their formation data is only a cross-section in 3-D perspective but with entire pack. However, despite this limitation this V-formation configuration provides a quantitative data for the understanding for the spatial properties, i.e., V-shape characteristics. There are 95 birds in total including the lead bird. Lower V-arm is denoted with tags dXX has 51 birds and upper V-arm is denoted by tags uXX has 43 birds. Lead bird has two entries d00 and u00 for consistency. Annotated image provides boxes and labels. The data is given under bird_arbitrary_coordinates as pixel location on the plane with tags. In coordinate annotation head of the bird is taken as a refrence point.</p>
Experimental data and scripts used for the paper "Imperfect symmetry of real annular combustors: beating thermoacoustic modes and heteroclinic orbits"
<p>The folder contains the experimental data, the scripts an the instructions to generate the figures of the paper.</p>
CROSSBOW HLU2-UC7-TC4 Real curtailment required to reduce cross-border congestion
<p>This dataset summarizes the amount of energy that should be curtailed in order to obtain the desired reduction at the monitored cross-border line.</p> <p>This amount is not linear and depending on the congestion size, the curtailment cost might be really expensive. This data summarizes the KPI results of analysing the real curtailment requirements when facing different congestions. Two scenarios are considered:</p> <ul> <li>In the line between substations GKORIN and G1ARGOS</li> <li>In the line between substations G2PATR31 and GSIMOP31</li> </ul> <p>For each unit of power reduction needed (x-axis) the corresponding curtailment required is presented (y-axis)</p>
Fiware-enabled tool for real-time control of the raw-water conveyance system of Athens
<p>This database includes the data used to produce the results for the following article:</p> <p>Bellos, V., Kossieris, P., Efstratiadis, A., Papakonstantis, I., Papanicolaou, P., Dimas, P., Makropoulos, C. 2022. Fiware-enabled tool for real-time control of the raw-water conveyance system of Athens. Proceedings of the 39th IAHR World Congress, 19-24 June 2022, Granada, Spain (accepted paper for oral presentation, in press). </p>
A Google Earth Engine code to analyze residential buildings' real estate values, summer surface thermal anomaly patterns and urban features: a Florence (Italy) case study
<ol> </ol> <p>The layers included in the code were from the study conducted by the research group of CNR-IBE (Institute of BioEconomy of the National Research Council of Italy) and ISPRA (Italian National Institute for Environmental Protection and Research), published by the Sustainability journal (<strong>https://doi.org/10.3390/su14148412</strong>).</p> <p>Link to the <strong>Google Earth Engine (GEE) code</strong> <strong>(link: <a href="https://code.earthengine.google.com/715aa44e13b3640b5f6370165edd3002">https://code.earthengine.google.com/715aa44e13b3640b5f6370165edd3002</a></strong>)</p> <p>You can analyze and visualize the following spatial layers by accessing the GEE link: </p> <ol> <li><strong>Daytime summer land surface temperature</strong> (raster data, horizontal resolution 30 m, from Landsat-8 remote sensing data, years 2015-2019)</li> <li><strong>Surface thermal hot-spot </strong>(raster data, horizontal resolution 30 m) was obtained by using a statistical-spatial method based on the Getis-Ord Gi* approach through the ArcGIS Pro tool.</li> <li><strong>Surface albedo</strong> (raster data, horizontal resolution 10 m, Sentinel-2A remote sensing data, year 2017)</li> <li><strong>Impervious area</strong> (raster data, horizontal resolution 10 m, ISPRA data, year 2017)</li> <li><strong>Tree cover</strong> (raster data, horizontal resolution 10 m, ISPRA data, year 2018)</li> <li><strong>Grassland area</strong> (raster data, horizontal resolution 10 m, ISPRA data, year 2017)</li> <li><strong>Water bodies</strong> (raster data, horizontal resolution 2 m, Geoscopio Platform of Tuscany, year 2016)</li> <li><strong>Sky View Factor</strong> (raster data, horizontal resolution 1 m, lidar data from the OpenData platform of Florence, year 2016)</li> <li><strong>Buildings' units</strong> of Florence (shapefile from the OpenData platform of Florence) include data on the residential real estate value from the Real Estate Market Observatory (OMI) of the National Revenue Agency of Italy (source: https://www1.agenziaentrate.gov.it/servizi/Consultazione/ricerca.htm, accessed on 14 July 2022). Data on the characterization of the buffer area (50 m) surrounding the buildings are included in this shapefile [the names of table attributes are reported in the square brackets]: averaged values of the daytime summer land surface temperature [LST_media], thermal hot-spot pattern [Thermal_cl], mean values of sky view factor [SVF_medio], surface albedo [alb_medio], and average percentage areas of imperviousness [ImperArea%], tree cover [TreeArea%], grassland [GrassArea%] and water bodies [WaterArea%]. </li> </ol> <p>Here attached the .txt file of the <strong>GEE code</strong>. </p> <p> </p> <p><em>E-mail</em></p> <p>Giulia Guerri, CNR-IBE, giulia.guerri@ibe.cnr.it</p> <p>Marco Morabito, CNR-IBE, marco.morabito@cnr.it</p> <p>Alfonso Crisci, CNR-IBE, alfonso.crisci@ibe.cnr.it</p>
The realization of autonomous, aircraft-based, real-time aerosol mass spectrometry in the upper troposphere and lower stratosphere (dataset)
<p>Dataset accompanying the journal article titled "The realization of autonomous, aircraft-based, real-time aerosol mass spectrometry in the upper troposphere and lower stratosphere". Preprint: doi.org/10.5194/egusphere-2022-33</p>
Real-time observation of alpha nucleation in Ti-6Al-4V
<p>This video was captured during an in-situ heating stage SEM experiment using a secondary electron camera at the University of Manchester, UK. The Ti-6Al-4V sample was heated to 1000°C to the full β-phase field and then slowly cooled (0.3°C/s) through the β transus, and the α-phase nucleation was recorded by the contrast change in the secondary electron camera from topography development on the sample surface due to surface relief. Microscope operated by Dr Alec E Davis and Dr Jack Donoghue, sample preparation by Nick Byres. These results were published in an Acta Materialia paper in 2021:</p> <p>Acta Materialia paper: https://doi.org/10.1016/j.actamat.2021.117315</p> <p>Researchgate (free peer reviewed preprint): https://bit.ly/3EHs7Na</p>
Matlab example for Local Enrichment Analysis (LEA) analysis with real data
<p>Phenotypic plasticity is essential to the immune system, yet the factors that shape it are not fully understood. Here, we comprehensively analyze immune cell phenotypes including morphology across human cohorts by single-round multiplexed immunofluorescence, automated microscopy, and deep learning. Using the uncertainty of convolutional neural networks to cluster the phenotypes of 8 distinct immune cell subsets, we find that the resulting maps are influenced by donor age, gender, and blood pressure, revealing distinct polarization and activation-associated phenotypes across immune cell classes. We further associate T-cell morphology to transcriptional state based on their joint donor variability, and validate an inflammation-associated polarized T-cell morphology, and an age-associated loss of mitochondria in CD4+ T-cells. Taken together, we show that immune cell phenotypes reflect both molecular and personal health information, opening new perspectives into the deep immune phenotyping of individual people in health and disease.</p>
A gridded dataset on population densities, real estate prices, transport and land use inside 192 worldwide urban areas
<p>This dataset provides, on a systematic basis, gridded population densities, rents, real estate prices, and transport times (both in<br> public transport and private car) in 192 cities across the world.</p>
Real operating data of a photovoltaic system installed at Area Science Park - Trieste - Italy
<p>Data collected from a monocrystalline silicon photovoltaic (PV) plant installed on building Q2 at Area Science Park in the Basovizza campus located in Trieste, Italy. The data represent almost 9 years of real operating conditions of the PV plant. Every 15 minutes the DC side electrical PV system working parameters were recorded, in addition also ambient temperature, irradiance in the plane of the modules and panel temperatures were recorded. Data are periodically downloaded using a control software.</p>
Text-fig. 5. East-west cross section of the Urema Graben and Cheringoma Plateau adapted from Pfaffhuber et al. (2009). The Urema Graben is ca. 45–50 km broad. Note that in this scheme, the Eocene Limestone (i.e., the Cheringoma Fm) is overlain by Oligocene sandstone in the position mapped as Mazamba Formation by Real (1966) and by Tinley (1977). in Stratigraphy, Chronology And Palaeontology Of The Tertiary Rocks Of The Cheringoma Plateau, Mozambique
Text-fig. 5. East-west cross section of the Urema Graben and Cheringoma Plateau adapted from Pfaffhuber et al. (2009). The Urema Graben is ca. 45–50 km broad. Note that in this scheme, the Eocene Limestone (i.e., the Cheringoma Fm) is overlain by Oligocene sandstone in the position mapped as Mazamba Formation by Real (1966) and by Tinley (1977).
A DNA biosensors-based microfluidic platform for attomolar real-time detection of unamplified SARS-CoV-2 virus
<p>Raw data associated to the study entitled:</p> <p><em>A DNA biosensors-based microfluidic platform for attomolar real-time detection of unamplified SARS-CoV-2 virus</em><strong> </strong></p> <p><em>- </em>Metadata file</p> <p>- Computational data</p> <p>- Extraction data</p> <p>- Fluorescence detection</p> <p>- Fluorescence imaging</p> <p>- Labbooks</p> <p>- Surface characterization</p>
Can we use hydraulic handbooks in blind trust? Two examples from a real-world complex hydraulic system
<p>This database includes the data used to produce the results for the following article:</p> <p>Bellos, V., Kossieris, P., Efstratiadis, A., Papakonstantis, I., Papanicolaou, P., Dimas, P., Makropoulos, C. 2022. Can we use hydraulic handbooks in blind trust? Two examples from a real-world complex hydraulic system. 7th IAHR Europe Congress, September 7th – 9th, 2022, Athens, Greece (accepted paper for oral presentation, in press).</p>
Exploring Housing Affordability in Illinois: An In-Depth Study of the State's Real Estate Market
<p>“Exploring Housing Affordability in Illinois: An In-Depth Study of the State’s Real Estate Market” focuses on the Illinois housing market from 2013 to 2022, mainly targeting housing affordability. Housing has been a cornerstone of stability in anyone’s life throughout history. Yet today, housing affordability has emerged as a critical societal issue impacting numerous individuals and families statewide. This study aims to get an overview of the trends of Illinois housing affordability over time across different counties in Illinois. It involves a comprehensive analysis of median home value and median incomes across Illinois counties, using data from two authoritative sources: the Census Bureau and Zillow. By providing insights, we can analyze and study the hidden factors that influence housing affordability over time and forecast future trends.</p>
Real-Time Adaptation of an Artificial Neural Network for Transfemoral Amputees Using a Powered Prosthesis
<p>This dataset contains the data used in our manuscript titled "Real-Time Adaptation of an Artificial Neural Network for Transfemoral Amputees Using a Powered Prosthesis". Data structure is explained in the README.txt file located at the top-level of the dataset.</p> <p>Please contact corresponding author Richard B. Woodward for any questions.</p>
Real-world comprehensive genomic and immune profiling reveals distinct age- and sex-based genomic and immune landscapes in tumors of patients with non-small cell lung cancer
<p>Wallen ZD, Ko H, Nesline MK, Hastings SB, Strickland KC, Previs RA, Zhang S, Pabla S, Conroy J, Jackson JB, Saini KS, Jensen TJ, Eisenberg M, Caveney B, Sathyan P, Severson EA, Ramkissoon SH. <strong>Real-world comprehensive genomic and immune profiling reveals distinct age- and sex-based genomic and immune landscapes in tumors of patients with non-small cell lung cancer.</strong> <em>Front Immunol.</em> 2024 Jun 21;15:1413956. doi: <a href="https://doi.org/10.3389/fimmu.2024.1413956">10.3389/fimmu.2024.1413956</a>. PMID: <a href="https://pubmed.ncbi.nlm.nih.gov/38975340/">38975340</a>; PMCID: <a href="https://pmc.ncbi.nlm.nih.gov/articles/PMC11224431/">PMC11224431</a>.</p> <p><strong>ABSTRACT</strong></p> <p>Younger patients with non-small cell lung cancer (NSCLC) (<50 years) represent a significant patient population with distinct clinicopathological features and enriched targetable genomic alterations compared to older patients. However, previous studies of younger NSCLC suffer from inconsistent findings, few studies have incorporated sex into their analyses, and studies targeting age-related differences in the tumor immune microenvironment are lacking. We performed a retrospective analysis of 8,230 patients with NSCLC, comparing genomic alterations and immunogenic markers of younger and older patients while also considering differences between male and female patients. We defined older patients as those ≥65 years and used a 5-year sliding threshold from <45 to <65 years to define various groups of younger patients. Additionally, in an independent cohort of patients with NSCLC, we use our observations to inform testing of the combinatorial effect of age and sex on survival of patients given immunotherapy with or without chemotherapy. We observed distinct genomic and immune microenvironment profiles for tumors of younger patients compared to tumors of older patients. Younger patient tumors were enriched in clinically relevant genomic alterations and had gene expression patterns indicative of reduced immune system activation, which was most evident when analyzing male patients. Further, we found younger male patients treated with immunotherapy alone had significantly worse survival compared to male patients ≥65 years, while the addition of chemotherapy reduced this disparity. Contrarily, we found younger female patients had significantly better survival compared to female patients ≥65 years when treated with immunotherapy plus chemotherapy, while treatment with immunotherapy alone resulted in similar outcomes. These results show the value of comprehensive genomic and immune profiling (CGIP) for informing clinical treatment of younger patients with NSCLC and provides support for broader coverage of CGIP for younger patients with advanced NSCLC.</p> <p><strong>DATA AVAILABILITY: </strong></p> <p>De-identified, individual-level patient data, genomic variants, and individual immune gene expression data used in the manuscript can be found in this repository (https://zenodo.org/record/11396552). An R markdown file with R code used to perform the analyses and generate figures is also provided in the repository along with the data. All versions of software used are provided in the Methods section of the manuscript. Raw sequencing data were derived from routine clinical testing of real-world patients and cannot be shared publicly. Data for immune gene expression signatures are not publicly available due to a non‑provisional patent filing covering the methods used to generate and analyze these data but are available from the corresponding author on reasonable request.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.