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371
datasets available to search
ShareScore release 0.9.0
Dataset results
371 results for “single cell genomics”
Droplet-based high-throughput 3D genome structure mapping of single cells with simultaneous transcriptomics (b3-mouse-brain)
GEO Series GSE285811. Mus musculus. 1 samples. Type: Other.
Single-cell analysis of fetal human gonads (male and female) using 10X genomics
GEO Series GSE181558. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide maps of nuclear lamina interactions in single human cells. (DamID; LaminB1, clone-5-5, haploid)
GEO Series GSE68260. Homo sapiens. 172 samples. Type: Other.
A single-cell transcriptomics CRISPR-activation screen identifies new epigenetic regulators of zygotic genome activation
GEO Series GSE135622. Mus musculus. 69 samples. Type: Expression profiling by high throughput sequencing.
Single-cell lineage capture across genomic modalities with CellTag-multi reveals fate-specific gene regulatory changes [scATAC-seq - LSK].
GEO Series GSE216506. Mus musculus. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell DNA methylome and 3D genome atlas of human subcutaneous adipose tissue [snRNA-Seq]
GEO Series GSE297258. Homo sapiens. 11 samples. Type: Expression profiling by high throughput sequencing.
Identification of multiple genomic alterations and prediction of neoantigens from circulating tumor cells at the single-cell level
GEO Series GSE267873. Homo sapiens; Mus musculus. 53 samples. Type: Other.
High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops [1000U]
GEO Series GSE278191. Homo sapiens. 96 samples. Type: Other.
A single-cell transcriptomics CRISPR-activation screen identifies new epigenetic regulators of the zygotic genome activation programme (10X Genomics 3' scRNA-seq of MERVL LTR and Zscan4 CRISPRa datase
GEO Series GSE135554. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
GTAC enables parallel genotyping of multiple genomic loci with chromatin accessibility profiling in single cells
GEO Series GSE214812. Homo sapiens. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome accessibility profile at single cell level for conventional dendritic cells in human metastatic melanoma samples [snATAC-Seq]
GEO Series GSE303948. Homo sapiens. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell RNAseq (10x Genomics) analysis of mouse splenic CD4+ T cells in WT and ∆Foxp3 mice and in WT/∆Foxp3 bone marrow chimeras
GEO Series GSE167575. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
Sampling time-dependent artifacts in single-cell genomics studies
GEO Series GSE132065. Homo sapiens. 408 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide profiles of replication initiation, single-stranded DNA accumulation, and Rad52 binding in cells exposed to replication stress
GEO Series GSE98462. Schizosaccharomyces pombe. 72 samples. Type: Other; Genome binding/occupancy profiling by genome tiling array; Genome variation profiling by array.
Single-cell analysis of Primordial Germ Cell-like cells (hPGCLC) (female and male) using 10X genomics
GEO Series GSE214521. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Single-cell genomics reveals a novel cell state during smooth muscle cell phenotypic switching and potential therapeutic targets for atherosclerosis in mouse and human
GEO Series GSE155514. Mus musculus; Homo sapiens. 17 samples. Type: Expression profiling by high throughput sequencing.
Analysis of population heterogeneity in CHO cells by genome-wide DNA methylation analysis and by multi-modal single-cell sequencing [time series]
GEO Series GSE273684. Cricetulus griseus. 21 samples. Type: Methylation profiling by high throughput sequencing.
A Novel platform for single-cell RNA-sequencing and its application in genome medicine [bulk]
GEO Series GSE179209. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing.
Single-cell transcriptomes combining with consecutive genomics reveal clonal evolution and gene regulatory networks in relapsed and refractory multiple myeloma
GEO Series GSE188632. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide analysis of SNB19 and SHSY5Y cells with single or double knockdown of SDHD and CDKN1C or SLC22A18
GEO Series GSE80968. Homo sapiens. 24 samples. Type: Expression profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.