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193
datasets available to search
ShareScore release 0.9.0
Dataset results
193 results for “trait analysis”
Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [RNA-Seq]
GEO Series GSE106430. Branchiostoma lanceolatum; Danio rerio; Oryzias latipes. 81 samples. Type: Expression profiling by high throughput sequencing.
Seed composition traits: comparative genomic hybridization analysis in glycine max fast neutron mutants
GEO Series GSE118594. Glycine max. 10 samples. Type: Genome variation profiling by array.
Novel physiological traits modulated by light in Acinetobacter baumannii assessed by whole transcriptome analysis.
GEO Series GSE90630. Acinetobacter baumannii. 6 samples. Type: Expression profiling by high throughput sequencing.
Expression quantitative trait loci (eQTL) analysis of mouse lung tumors
GEO Series GSE71232. Mus musculus. 143 samples. Type: Expression profiling by array.
Identification of molecular pathways and candidate genes associated with cocks' comb size trait by genome-wide transcriptome analysis
GEO Series GSE107815. Gallus gallus. 6 samples. Type: Expression profiling by high throughput sequencing.
Genetic analysis of the modern Australian labradoodle dog breed reveals strong selection for poodle traits
GEO Series GSE147501. Canis lupus familiaris. 47 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Meta-analysis of fat distribution traits in UK Biobank; meta-analysis output
<p>Some of my previously-uploaded files round a small number of p-values to zero. Uploading the METAL output so that the rounding errors can be avoided.</p> <p>Columns:</p> <ul> <li>SNP: rs identifier with reference and alternate alleles appended</li> <li>Allele1: first allele</li> <li>Allele2: second allele</li> <li>Freq1</li> <li>frequency of the variant collapsed across strata</li> <li>FreqSE: standard error of the frequency estimate</li> <li>MinFreq: minimum frequency</li> <li>MaxFreq: maximum frequency</li> <li>Effect: beta of the SNP</li> <li>StdErr: standard error</li> <li>P-value</li> <li>Direction: direction of effect in each stratum (UK Biobank, GIANT)</li> </ul> <p> </p> <p> </p>
Meta analysis data and fitness-related trait values
<ol> <li class="Default"><span><span>Crop-wild gene flow may alter the fitness performance of the recipient i.e. crop-wild hybrids, then potentially impact wild populations, especially for the gene flow carrying selective advantage crop alleles. Given the continuous crop-wild gene flow since crop domestication and the occasionally stressful environments, the extant wild populations of most crops are still "wild". This paradox hints some mechanisms may mitigate the effects of crop-wild gene flow but never been examined. </span></span></li> <li class="Default"><span><span>We used wild rice (<i>O. rufipogon</i>) and transgenic (<i>Bt/CpTI) </i>rice as a crop-wild gene flow model and established cultivated, wild and hybrid rice populations (<i>O. rufipogon </i>× <i><span>O. sativa</span></i>) under four levels of <span>insect </span>(<i>Chilo suppressalis</i>) pressure. Then, we measured the fitness performance of the plants.</span></span></li> <li class="Default"><span><span>The fitness performance of all plants varied with the insect pressure level; wild plants <span>displayed over- or equal-compensatory </span>responses<span> to insect damage</span>,<span> whereas hybrids exhibited under-compensatory </span>responses, showing wild plants have higher insect-tolerance. The high tolerance results in better performance of wild rice under stressful conditions, while transgenes expressed a beneficial<span> effect on </span>plant<span> performance only under certain levels of insect pressure</span>. <span>Hybrid advantage is remarkable. Transgenes and hybrid advantage may increase hybrid fitness, but such effect is reduced by tolerance under stressful environments.</span></span></span></li> <li class="Default"><span><span><i><span>Synthesis. </span></i><span>These results </span>suggest<span> that high tolerance to environmental stress is a mechanism mitigating </span>the impacts of crop gene flow on<span> wild </span>plants by weakening hybrid fitness performance.</span></span></li> </ol>
Hidradenitis - an Analysis of Genetic Traits and Linkages in Families
ClinicalTrials.gov study NCT05710393. IPD Sharing: NO. Countries: 1. Publications: 0.
Analysis of Screen-detected Lung Cancers' Genomic Traits
ClinicalTrials.gov study NCT04204499. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Novel Approaches in Linkage Analysis for Complex Traits
ClinicalTrials.gov study NCT00049855. IPD Sharing: Not stated. Countries: 0. Publications: 3.
Functional genomic and transcriptomic analysis of ptychodera and the origin of vertebrate genomic traits
GEO Series GSE189808. Xenopus tropicalis; Ptychodera flava. 18 samples. Type: Expression profiling by high throughput sequencing.
Data from: Meta-analysis reveals that hydraulic traits explain cross-species patterns of drought-induced tree mortality across the globe
Open the record for dataset details and reuse information.
Meta analysis data and fitness-related trait values
Open the record for dataset details and reuse information.
Spatial analysis of microRNA regulation at defined tumor hypoxia levels reveals biological traits of aggressive prostate cancer
GEO Series GSE256390. Homo sapiens. 91 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Mapping of hepatic expression quantitative trait loci (eQTLs) in a Han Chinese population [SNP analysis]
GEO Series GSE53790. Homo sapiens. 64 samples. Type: Genome variation profiling by SNP array.
Genomic expression analysis of rat chromosome 4 for skeletal traits at femoral neck
GEO Series GSE11180. Rattus norvegicus. 16 samples. Type: Expression profiling by array.
Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [CAGE]
GEO Series GSE106429. Branchiostoma lanceolatum. 7 samples. Type: Expression profiling by high throughput sequencing.
Analysis of σL dependent traits based on phenotypic and transcriptomic evaluation of the Listeria monocytogenes EGDe strain
GEO Series GSE32434. Listeria monocytogenes; Listeria monocytogenes EGD-e. 36 samples. Type: Expression profiling by array.
Fig. 1 in Fatty acids as chemotaxonomic and ecophysiological traits in green microalgae (desmids, Zygnematophyceae, Streptophyta): A discriminant analysis approach
Fig. 1. Linear discriminant analysis based on fatty acid profiles of desmid strains belonging to the climate-origin group. (a) Discrimination of the clusters (tropical, subtropical, moderate, and polar) at the start of cultivation (2 days). (b) Discrimination of the clusters (tropical, subtropical, moderate, and polar) at the end of cultivation (24 days). DF1 – the first discrimination function; DF2 – the second discrimination function; red triangles – tropical strains; orange quadrangles – subtropical strains; green pentangles – strains from moderate climate; blue circles – polar strains. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.