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Decomposition rates of four litter types along coastal gradients in Everglades National Park (FCE LTER), Florida, USA: 2020-2021
Leaf litter, of variable quality, was deployed along freshwater-to-marine gradients to investigate the drivers of litter breakdown in the Florida Coastal Everglades. Sea-level rise provides both stressors and subsidies to microbial communities that break down litter, and is also causing shifts in the vegetation producing litter, changing the initial quality of litter being deposited in coastal wetlands. The goal of this project was to understand the complex relationship between marine stressors and subsidies, by performing a reciprocal transplant of litter. Litter from each major vegetation species along the freshwater to marine gradient were deployed at sites in freshwater, the ecotone, mangrove forest, and in Florida Bay. This reciprocal transplant of different qualities of leaf litter into novel environments across a gradient of salinity and phosphorus will give insights into the effects of litter carbon quality, littery chemistry, microbial productivity of decomposers, and environmental chemistry as drivers of the breakdown of leaf litter.
A database of soil type and soil depth across Everglades National Park, Florida, USA
This dataset contains record of soil type and soil depth across Everglades National Park. This data was obtained through published literature, unpublished field data, and inter-agency collaboration. Data come from either soil cores to bedrock or refusal (as specified by data source), cores that did not reach bedrock, a soil probe to determine depth, or the depth of installed surface elevation tables. Soil type was classified either along a gradient of organic matter content when data was available: mineral (<40%), intermediate (40-70%), or organic (<70%). When data on organic matter content wasn’t available but qualitative descriptions of soil type were, the type unit of soil was classified as either organic or mineral based on the descriptive lithology. When lithologic descriptions were provided and indicated the soil profile was not entirely one soil type (e.g. peat), depth of peat within core was recorded. When data source had specific coordinates, those coordinates were used. For older studies that only provided a figure showing the location of each estimate at a broad scale, location was estimated by georeferencing the figure in ArcMap, and dropping a point at each location. Records were cross-referenced with a recent vegetation map developed by the National Park Service in order to obtained vegetation community at each location (Ruiz et al. 2017).
Roads: Location and Type - Ipswich Watershed - Idrisi Raster File.
This data layer contains the roads within the Ipswich River Watershed, according to MassGIS (http://www.state.ma.us/mgis/) as of July 17, 2002. THis datalayer is part of a group of layers used for research in the Ipswich River Watershed. To show the location and type of roads within the watershed.
Bulk RNA-Seq PBMC data of SLE patients and healthy volunteers/ profiling of 29 individual immune cell types as well as PBMCs of healthy donors
<p>This Zenodo project contains processed gene expression data from two publicly available data sets. It includes the gene expression data of peripheral blood mononuclear cells (PBMCs) of systemic lupus erythematosus (SLE) patients as well as healthy volunteers (GSE122459). The project also comprises the bulk RNA-Seq profiling of 29 immune cell types as well as PBMCs of healthy individuals (GSE107011). In both cases, the raw RNA-Seq data was downloaded, aligned and processed. The gene expression data is available in form of a count matrix (GSE107011) or count matrix and transcript-per-million (TPM) values (GSE122459). For the latter, an annotation file is attached. Further details are provided in the information file. </p>
Data set for "Pathway-, layer- and cell-type-specific thalamic input to mouse barrel cortex"
<p>Data set for: Sermet BS, Truschow P, Feyerabend M, Mayrhofer JM, Oram TB, Yizhar O, Staiger JF, Petersen CCH (2019) Pathway-, layer- and cell-type-specific thalamic input to mouse barrel cortex. eLife 8: e52665. https://doi.org/10.7554/eLife.52665</p> <p>There are 2 files in this upload:</p> <p>1. The file named "2019_Sermet_eLife.pdf" is the Open Access pdf file of the manuscript published in eLife.</p> <p>2. The file named "Sermet_data_code.zip" (~5 GB) is a zipped version of a folder "Sermet_data_code" (~5 GB), which contains the data analysed in the study along with the Matlab code used to generate the published figures. When unzipped, the folder contains 8 Matlab '.m' files with analysis code and one '.mat' data file. In order to run the analysis of the data set, you need to execute 'PopPlot.m'.</p>
Basins of attractions for six types hidden quasiperiodic attractors in a Thomas Fermi plasma
<p>This figures (a) and (b) represent cross-section of the basins of attractions on the z-x plane with f<sub>0</sub> equal to 3:96 and 6:5 respectively, for multistability behaviors or coexisting attractors of ion-acoustic waves in a magnetized Thomas Fermi plasma.<br> </p>
Figures 55–60 in Onciderini Thomson, 1860 (Coleoptera: Cerambycidae: Lamiinae) types of the Museu de Zoologia, Universidade de São Paulo (MZSP), with a brief history of the Coleoptera collection
Figures 55–60. Six species of Onciderini. Fig. 55. Oncideres diringsi Martins and Galileo (a, dorsal habitus; b, labels). Fig. 56. Oncideres errata Martins and Galileo (a, dorsal habitus; b, labels). Fig. 57. Oncideres glebulenta Martins (a, dorsal habitus; b, labels). Fig. 58. Oncideres irrorata Melzer (a, dorsal habitus; b, labels). Fig. 59. Oncideres magnifica Martins (a, dorsal habitus; b, labels). Fig. 60. Oncideres manauara Martins and Galileo (a, dorsal habitus; b, labels).
Figures 43–48 in Onciderini Thomson, 1860 (Coleoptera: Cerambycidae: Lamiinae) types of the Museu de Zoologia, Universidade de São Paulo (MZSP), with a brief history of the Coleoptera collection
Figures 43–48. Six species of Onciderini. Fig. 43. Japi duartei Martins and Galileo (a, dorsal habitus; b, labels). Fig. 44. Lingafelteria pandolfii Nearns and Nascimento (a, dorsal habitus; b, labels). Fig. 45. Neohylus alexandrei Martins and Galileo (a, dorsal habitus; b, labels). Fig. 46. Oncideres albopicta Martins and Galileo (a, dorsal habitus; b, labels). Fig. 47. Oncideres alicei Lane (a, dorsal habitus; b, labels). Fig. 48. Oncideres antonkozlovi Nearns and Nascimento (a, dorsal habitus; b, labels).
Figures 13–18 in Onciderini Thomson, 1860 (Coleoptera: Cerambycidae: Lamiinae) types of the Museu de Zoologia, Universidade de São Paulo (MZSP), with a brief history of the Coleoptera collection
Figures 13–18. Six species of Onciderini. Fig. 13. Charoides pigra Martins and Galileo (a, dorsal habitus; b, labels). Fig. 14. Cnemosioma innominata Martins (a, dorsal habitus; b, labels). Fig. 15. Cylicasta chionea Martins (a, dorsal habitus; b, labels). Fig. 16. Euthima araujoi Martins (a, dorsal habitus; b, labels). Fig. 17. Glypthaga mucorea Martins and Galileo (a, dorsal habitus; b, labels). Fig. 18. Glypthaga unicolor Martins and Galileo (a, dorsal habitus; b, labels).
Figures 7–12 in Onciderini Thomson, 1860 (Coleoptera: Cerambycidae: Lamiinae) types of the Museu de Zoologia, Universidade de São Paulo (MZSP), with a brief history of the Coleoptera collection
Figures 7–12. Six species of Onciderini. Fig. 7. Cacostola gracilis Marinoni and Martins (a, dorsal habitus; b, labels). Fig. 8. Cacostola nordestina Martins and Galileo (a, dorsal habitus; b, labels). Fig. 9. Cacostola parafusca Martins, Galileo, and Limeira-de-Oliveira (a, dorsal habitus; b, labels). Fig. 10. Cacostola sulcipennis Melzer (a, dorsal habitus; b, labels). Fig. 11. Cacostola vanini Martins (a, dorsal habitus; b, labels). Fig. 12. Charoides pepoata Martins and Galileo (a, dorsal habitus; b, labels).
Figures 1–6 in Onciderini Thomson, 1860 (Coleoptera: Cerambycidae: Lamiinae) types of the Museu de Zoologia, Universidade de São Paulo (MZSP), with a brief history of the Coleoptera collection
Figures 1–6. Six species of Onciderini. Fig. 1. Bucoides montana Martins and Galileo (a, dorsal habitus; b, labels). Fig. 2. Cacostola acuticauda Marinoni and Martins (a, dorsal habitus; b, labels). Fig. 3. Cacostola bimaculata Martins, Galileo, and Limeira-de-Oliveira (a, dorsal habitus; b, labels). Fig. 4. Cacostola carinata Martins, Galileo, and Santos-Silva (a, dorsal habitus; b, labels). Fig. 5. Cacostola colombiana Martins and Galileo (a, dorsal habitus; b, labels). Fig. 6. Cacostola exilis Martins, Galileo, and Limeira-de-Oliveira (a, dorsal habitus; b, labels).
Figs 1–4 in A revision of the types of Heteroptera species described by Géza Horváth based on specimens from collections of Ladislav Duda and Emil Holub
Figs 1–4. Schematic maps of Emil Holub's journeys in southern Africa. 1–3 – First journey (1872–1879): 1 – arrival / departure (1872 / 1878–79, yellow, ship route marked by a dashed line) and 1st expedition (1873, red); 2 – 2nd expedition (1873–74); 3 – 3rd expedition (1875–76). 4 – Second journey (1883–1887, train route marked by a dashed line). Based on Holub's original maps (HOLUB 1880a,b, 1881a,b, 1890a,b), MLÍKOVSKÝ et al. (2011) and ŠÁMAL (2013).
Figs 38–49 in A revision of the types of Heteroptera species described by Géza Horváth based on specimens from collections of Ladislav Duda and Emil Holub
Figs 38–49. Habitus and labels of type specimens. 38–40 – Niamia angulosa Horváth, 1893, ♀, syntype; 41–43 – Cryptacrus princeps Horváth, 1893 [= C. comes comes (Fabricius, 1803)], ♀, syntype; 44–45 – Polytodes ochraceus Horváth, 1893 [= Polytes tigrinus (Vollenhoven, 1868)],?sex, holotype; 46–49 – Dinidor vicarius Horváth, 1893 [= D. impicticollis Stål, 1870], ♀, holotype. Scale bars in mm. (Photo: 38–43, 46–49 – D. Rédei, 44–45 – Ch. Marshall).
Figs 5–22 in A revision of the types of Heteroptera species described by Géza Horváth based on specimens from collections of Ladislav Duda and Emil Holub
Figs 5–22. Habitus and labels of type specimens. 5–7 – Coranopsis vittata Horváth, 1893, ♀, syntype; 8–11 – Cosmolestes fulvus Horváth, 1893, ♀, holotype; 12–15 – Edocla albipennis Horváth, 1893,, holotype; 16–18 – Harpactor dudae Horváth, 1893 [= Rhynocoris dudae],, syntype; 19–22 – Oncocephalus angustatus Horváth, 1893, ♀, syntype. Scale bars in mm. (Photo: D. Rédei).
FIG. 3. — A, Pelocarcinus marchei A in Annotated type-catalogue of Brachyura (Crustacea, Decapoda) of the Muséum national d'Histoire naturelle, Paris. Part II. Gecarcinidae and Grapsidae (Thoracotremata, Grapsoidea), with an Appendix of pre-1900 collectors
FIG. 3. — A, Pelocarcinus marchei A. Milne-Edwards, 1890, MNHN-IU-2000-3752 (= MNHN-B3752), lectotype, ♂; B, Thelphusa rotunda Quoy & Gaimard, 1824, MNHN-IU-2000-3745 (= MNHN-B3745), lectotype, ♂; C, Grapsus brevipes H. Milne Edwards, 1853, MNHN-IU-2000-10978 (= MNHN-B10978), lectotype, ♂; D, Grapsus cruentatus Latreille, 1803, MNHN-IU-2000-3407 (= MNHN-B3407), neotype, ♂; E, Grapsus fourmanoiri Crosnier, 1965, MNHN-IU-2008-10635 (= MNHN-B11803), lectotype, ♂; F, Grapsus gracilipes H. Milne Edwards, 1853, MNHN-IU-2000-3411 (= MNHN-B3411), lectotype, ♂; G, Grapsus granulosus H. Milne Edwards, 1853, MNHN-IU-2000-3417 (= MNHN-B3417), lectotype, ♂; H, Grapsus grayi H. Milne Edwards, 1853, MNHN-IU-2000-3421 (= MNHN-B3421), lectotype, ♀. Scale bars: A-D, F, H, 2 cm; E, 10 mm; G, 5 cm.
FIG. 2. — A, Cardisoma urvillei H. Milne Edwards, 1853 in Annotated type-catalogue of Brachyura (Crustacea, Decapoda) of the Muséum national d'Histoire naturelle, Paris. Part II. Gecarcinidae and Grapsidae (Thoracotremata, Grapsoidea), with an Appendix of pre-1900 collectors
FIG. 2. — A, Cardisoma urvillei H. Milne Edwards, 1853, MNHN-IU-2000-3735 (= MNHN-B3735), lectotype, ♂; B, Discoplax gracilipes Ng & Guinot, 2001, MNHN-IU-2014-11214 (= MNHN-B26950), paratype, ♀; C, Discoplax longipes A. Milne-Edwards, 1867, MNHN-IU-2000-3763 (= MNHN-B3763), lectotype, ♂; D, Gecarcinus digueti Bouvier, 1895, MNHN-IU-2000-10951 (= MNHN-B10951), holotype, ♂; E, Gecarcinus lagostoma H. Milne Edwards, 1837, MNHN-IU-2000-3750 (= MNHN-B3750), lectotype, ♂; F, Gecarcinus lateralis Fréminville in Guérin-Méneville, 1832, MNHN-IU-2000-3758 (= MNHN-B3758), neotype, ♂; G, Gecarcinus nobilii Perger & Wall, 2014, MNHN-IU-2014-11211 (= MNHN-B12314), paratype, ♀; H, Pelocarcinus cailloti A. Milne-Edwards, 1890, MNHN-IU-2000-3751 (= MNHN-B3751), holotype, ♂. Scale bars: A, E, 5 cm; B-D, F-H, 2 cm.
FIG. 6. — A, Leptograpsus ansoni H. Milne Edwards, 1853 in Annotated type-catalogue of Brachyura (Crustacea, Decapoda) of the Muséum national d'Histoire naturelle, Paris. Part II. Gecarcinidae and Grapsidae (Thoracotremata, Grapsoidea), with an Appendix of pre-1900 collectors
FIG. 6. — A, Leptograpsus ansoni H. Milne Edwards, 1853, MNHN-IU-2000-4023 (= MNHN-B4023), lectotype, ♂; B, Leptograpsus bertheloti H. Milne Edwards, 1853, MNHN-IU-2000-10944 (= MNHN-B10944), lectotype, ♀; C, Leptograpsus gayi H. Milne Edwards, 1853, MNHN-IU-2000-3531 (= MNHN-B3531), lectotype, ♂; D, Leptograpsus rugulosus H. Milne Edwards, 1853, MNHN-IU-2000-3534 (= MNHN-B3534), lectotype, ♂; E, Leptograpsus verreauxi H. Milne Edwards, 1853, MNHN-IU-2000-4024 (= MNHN-B4024), lectotype, ♂; F, Metopograpsus eydouxi H. Milne Edwards, 1853, MNHN-IU-2000-3547 (= MNHN-B3547), lectotype, ♂. Scale bars: A, D, F, 10 mm; B, C, E, 2 cm.
Data_text section 3.3_Enzymatic interconversion of the oxysterols 7β,25 dihydroxycholesterol and 7-keto,25-hydroxycholesterol by 11β-hydroxysteroid dehydrogenase type 1 and 2
<p>Data from kinetic characterization (Km and vmaxapp) described in text section 3.3 of Enzymatic interconversion of the oxysterols 7β,25 dihydroxycholesterol and 7-keto,25-hydroxycholesterol by 11β-hydroxysteroid dehydrogenase type 1 and 2</p> <p>Dataset (doi:<a href="https://doi.org/10.1016/j.jsbmb.2019.03.011">10.1016/j.jsbmb.2019.03.011</a>) contains values from kinetic characterization (10.1016_j.jsbmb.2019.03.011_text3.3_Km_vmax) described in text section 3.3 corresponding to raw data obtained from LC-MS/MS analysis provided as three files in CSV format (31003A-179400_date_name_25Oxysterol_4_10_1-3). All further experiment related information and subsequent data analysis provided as two meta-data-files: (31003A-179400_date_name_25Oxysterol_4_9_M_1-2) as TXT and pdf format.</p>
Data_Figure 2_Enzymatic interconversion of the oxysterols 7β,25 dihydroxycholesterol and 7-keto,25-hydroxycholesterol by 11β-hydroxysteroid dehydrogenase type 1 and 2
<p>Data of figure 2 from Enzymatic interconversion of the oxysterols 7β,25 dihydroxycholesterol and 7-keto,25-hydroxycholesterol by 11β-hydroxysteroid dehydrogenase type 1 and 2</p> <p>Dataset (doi:<a href="https://doi.org/10.1016/j.jsbmb.2019.03.011">10.1016/j.jsbmb.2019.03.011</a>) contains the original figure in PNG format, (<a href="https://doi.org/10.1016/j.jsbmb.2019.03.011">10.1016/j.jsbmb.2019.03.011</a>_Fig. 2). Corresponding raw data obtained from LC-MS/MS analysis provided as eight files in CSV format (31003A-179400_Date_Name_25Oxysterol_4_Dataset_1-4). All further experiment related information and subsequent data analysis provided as two meta-data-files (31003A-179400_Date_Name_25Oxysterol_4_Dataset _M_1-2) as TXT format and PDF format.</p>
Data_Figure 4_Enzymatic interconversion of the oxysterols 7β,25 dihydroxycholesterol and 7-keto,25-hydroxycholesterol by 11β-hydroxysteroid dehydrogenase type 1 and 2
<p>Data of figure 4 from Enzymatic interconversion of the oxysterols 7β,25 dihydroxycholesterol and 7-keto,25-hydroxycholesterol by 11β-hydroxysteroid dehydrogenase type 1 and 2</p> <p>Dataset ((doi:<a href="https://doi.org/10.1016/j.jsbmb.2019.03.011">10.1016/j.jsbmb.2019.03.011</a>) contains the original figure as PNG format (<a href="https://doi.org/10.1016/j.jsbmb.2019.03.011">10.1016/j.jsbmb.2019.03.011</a>_Fig. 4). Corresponding raw data obtained from liquid scintillation analysis provided as 10 files in CSV format (31003A-179400_date_KB_25Oxysterol_11_dataset_1-4). All further experiment related information and subsequent data analysis provided as three meta-data-files (31003A-179400_date_name_25Oxysterol_11_dataset_M_1) as TXT format.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.