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Artibeus gnomus is placed in Dermanura by some authors, but itis reassigned to Artibeus (subgenus Dermanura) after reinterpretation of molecular results. Before its description, some populations were referred to as A. pumilio, although that name is now associated with A. glaucus. Monotypic. Distribution. South America, E of Andes, including E Venezuela, the Guianas, E Colombia, E Ecuador, E Peru, Bolivia, and Brazil. in Phyllostomidae
Artibeus gnomus is placed in Dermanura by some authors, but itis reassigned to Artibeus (subgenus Dermanura) after reinterpretation of molecular results. Before its description, some populations were referred to as A. pumilio, although that name is now associated with A. glaucus. Monotypic. Distribution. South America, E of Andes, including E Venezuela, the Guianas, E Colombia, E Ecuador, E Peru, Bolivia, and Brazil.
Sagittal Balance in Children: Reference Values of the Sacral Slope for the Roussouly Classification and of the Pelvic Incidence for a New, Age-Specific Classification
<p>Raw data of the paper entitled "Sagittal Balance in Children: Reference Values of the Sacral Slope for the Roussouly Classification and of the Pelvic Incidence for a New, Age-Specific Classification", published on Applied Sciences</p>
Distribution. Endemic to the Rwenzori Mountains in W Uganda. Distribution is not believed to overlap with other duikers in the C. nigrifrons group as once thought; records of C. rubidus from Rwanda likely refer to the Black-fronted Duiker subspecies (C. maigrifrons kivuensis); this latter species is absent from the Rwenzoris. in Bovidae
Distribution. Endemic to the Rwenzori Mountains in W Uganda. Distribution is not believed to overlap with other duikers in the C. nigrifrons group as once thought; records of C. rubidus from Rwanda likely refer to the Black-fronted Duiker subspecies (C. maigrifrons kivuensis); this latter species is absent from the Rwenzoris.
The upper canines of the male Sulawesi Babirusa grow upwards through the snout and continue to grow in a backward-curving spiral. They are too brittle and shallow rooted to be used in fighting and theirfunction, if any, is unknown. Until recently, all babirusas were classified as a single species. The genus has now been split into at least three species, based on features of their skulls and teeth and the amount of hair on their bodies. The Sulawest Babirusa has nearly naked skin. The name Babyrousa celebensis specifically refers to animals from north Sulawesi and the taxonomic identity of babirusas onthe rest of the island remains undecided. Unlike other pig species, babirusas do not have noses adapted for rooting. Babyrousa celebensis Lore Lindu National Park, Sulawesi. Photo: Berndt Fischer/ photolibrary.com in Suidae
The upper canines of the male Sulawesi Babirusa grow upwards through the snout and continue to grow in a backward-curving spiral. They are too brittle and shallow rooted to be used in fighting and theirfunction, if any, is unknown. Until recently, all babirusas were classified as a single species. The genus has now been split into at least three species, based on features of their skulls and teeth and the amount of hair on their bodies. The Sulawest Babirusa has nearly naked skin. The name Babyrousa celebensis specifically refers to animals from north Sulawesi and the taxonomic identity of babirusas onthe rest of the island remains undecided. Unlike other pig species, babirusas do not have noses adapted for rooting. Babyrousa celebensis Lore Lindu National Park, Sulawesi. Photo: Berndt Fischer/ photolibrary.com
Distribution. Recorded from six disjunct locations in SW & NE India and NE Cambodia, including type locality in Karnataka, and Phrang Karuh Cave, Jaintia Hills, and Thangsah in Meghalaya; in Cambodia known only from a single specimen from Chhaeb district, Preah Vihear Province, while another record based on a photograph of a dead bat from Bahon Temple is also provisionally referred to this species. in Molossidae
Distribution. Recorded from six disjunct locations in SW & NE India and NE Cambodia, including type locality in Karnataka, and Phrang Karuh Cave, Jaintia Hills, and Thangsah in Meghalaya; in Cambodia known only from a single specimen from Chhaeb district, Preah Vihear Province, while another record based on a photograph of a dead bat from Bahon Temple is also provisionally referred to this species.
Amplicon_sorter: a tool for reference-free amplicon sorting based on sequence similarity and for building consensus sequences
<p>Oxford Nanopore Technologies (ONT) is a third-generation sequencing technology that is gaining popularity in ecological research for its portable and low-cost sequencing possibilities. Although the technology excels at long-read sequencing, it can also be applied to sequence amplicons. The downside of ONT is the low quality of the raw reads. Hence, generating a high-quality consensus sequence is still a challenge. We present Amplicon_sorter, a tool for reference-free sorting of ONT sequenced amplicons based on their similarity in sequence and length and for building solid consensus sequences.</p>
Data from: Detecting seminal research contributions to the development of ethnobotany by reference publication year spectroscopy (RPYS)
<p>This study aims to assess the growth in overall publication output in ethnobotany as well as provide a systematic examination of the history of ethnobotanical publications using reference publication year spectroscopy (RPYS). The study is based on 5201 papers published between 1974 and 2019 covering 290006 non-distinct cited references (CRs), indexed in Science Citation Index-Expanded (SCI-Expanded) of Web of Science (WoS). The regression analysis indicated a compound annual growth rate of approximately 11% globally in ethnobotanical publications and the volume of publications doubles every approximately 6 years. The reference publication period was divided into four sub-periods in which a total of 31 peaks are clearly identifiable, including five peaks from the first period (earliest to 1800), ten from the second (1801–1900), nine from the third (1901–1950) and seven from the last period (1951–2000). A total of 44 publications were found to have been especially influential and landmark. Out of them, 31 (70%) were books and 11 (25%) were articles. Out of the 11 articles, 5 (45%) were published in the same journal (Economic Botany). The first period had the lowest number of publications (5), including classic books like the Spanish translation of Dioscorides' <em>Materia Medica </em>and Carolus Linnaeus' <em>Systema naturæ.</em> Interestingly, about 30% of the studies that laid the foundation of ethnobotany and are discussed in this paper come from South Africa, pointing to the contribution of the African Continent to the foundation of the field of ethnobotany.</p>
Reference genomes for WGSUniFrac experiments - simulated
<p>99_otus.fasta: reference genome for 16S data</p> <p>wgs_genome2: reference genome for wgs data</p>
Unambiguous Reference (hs37d5)
<p>Reference to build the chromosome graphs of GraphChainer's experiments (<a href="https://doi.org/10.1101/2022.01.07.475257">https://doi.org/10.1101/2022.01.07.475257</a>)</p> <p>It was created by randomly replacing each ambiguous character by one of its indicated characters, from the hs37d5 (<a>ftp://ftp.1000genomes.ebi.ac.uk//vol1/ftp/technical/reference/phase2_reference_assembly_sequence/hs37d5.fa.gz</a>) reference genome.</p>
Addiitional Files: The diagrams of population structure, highly divergent regions, GC content and Nanopore reads depth, SNP number and Nanopore reads depth, and analyses of co-linearity against Nipponbare reference genome in 251 accessions.
<p>Additional Files for " <strong>A Super Pan-Genomic Landscape of Rice".</strong></p> <p>Addtional File1: Supplementary File1.Population structure of 251 rice accessions inferred by ADMIXTURE from K=6 to K=15.</p> <p>Additional File2: Supplementary File2.The diagram of co-linearity for assembled genome against Nipponbare refercne genome in 251 rice accessions.</p> <p>Additional File3: Supplementary File3. Highly divergent regions based on SV.</p> <p>Additional File4: Supplementary File4. The diagram of SNP number and Nanopore reads depth per 100kb windows in 251 rice accessions.</p> <p>Additonal File5:Supplementary File5. The diagram of GC content and the Nanopore reads depth per 10kb windows in 251 rice accessions.</p> <p> </p>
EHR screen, test, and refer to HFMH DPP
<p>Objective: Determine if certified electronic health record technology (CEHRT) can be used to identify and refer patients with prediabetes to lifestyle change programs (LCPs) recognized by the National Diabetes Prevention Program (DPP).</p> <p>Materials and Methods: This pilot utilized a prediabetes registry, patient portal, and clinical decision support to increase referrals.</p> <p>Results: Data from 36 primary care providers showed 4,930 patients were eligible for DPP LCP, 293 referrals were generated, compared to 20 referrals in the baseline period, and 116 patients enrolled. Referral to enrollment conversion rates were 41% in the study period and 69% in the post-study 1-year period.</p> <p>Discussion: CEHRT functionalities can support systematic identification and management of prediabetes. The referral rate increased seven-fold compared to the baseline period, with high referral to enrollment conversion rates.</p> <p>Conclusions: CEHRT coupled with active provider engagement can serve as a tool to identify prediabetes patients and facilitate LCP referrals and enrollment.</p>
Reference panel and test data for hapCon
<p>This dataset contains the reference panel needed to run hapCon and some test data. After unzipping, the folder ./reference contains the reference panel and its associated metadata, and the folder ./data contains two BAM files as test data, which is used in our <a href="https://github.com/hyl317/hapROH/blob/master/Notebooks/Vignettes/hapCon_vignette.ipynb">jupyter notebook tutorial</a>. Please visit our <a href="https://haproh.readthedocs.io/en/latest/hapCon.html">readthedocs</a> site for detailed documentation. </p>
Distribution. New Guinea, including Yapen, Mios Num, and Roon Is in Cenderawasih (= Geelvink) Bay, Karkar and Walis Is off the N coast, Raja Ampat Is of Salawati, Sorong, and Misool, SE Papua New Guinea Is of Samarai (= Dinner) and Dufaure (= Dufour), and Aru Is. It is present on many islands of C & S Moluccas (Seram, Ambon, Pulau Pandjang, Buru, and the Tayandu and Kai archipelagos). It has been introduced to Selayar I between Sulawesi and Flores (W occurrence of the species), and there are vague records from Flores and Sulawesi, which may also refer to the Selayar population. This species was also apparently introduced to Mussau (St. Matthias Group, NE Bismarck Archipelago) in prehistoric times and to New Ireland I (Bismarck Archipelago) in the 20™ century. in Phalangeridae
Distribution. New Guinea, including Yapen, Mios Num, and Roon Is in Cenderawasih (= Geelvink) Bay, Karkar and Walis Is off the N coast, Raja Ampat Is of Salawati, Sorong, and Misool, SE Papua New Guinea Is of Samarai (= Dinner) and Dufaure (= Dufour), and Aru Is. It is present on many islands of C & S Moluccas (Seram, Ambon, Pulau Pandjang, Buru, and the Tayandu and Kai archipelagos). It has been introduced to Selayar I between Sulawesi and Flores (W occurrence of the species), and there are vague records from Flores and Sulawesi, which may also refer to the Selayar population. This species was also apparently introduced to Mussau (St. Matthias Group, NE Bismarck Archipelago) in prehistoric times and to New Ireland I (Bismarck Archipelago) in the 20™ century.
Data from: Using a reference population yardstick to calibrate and compare genetic diversity reported in different studies: an example from the brown bear.
In species with large geographic ranges, genetic diversity of different populations may be well studied, but differences in loci and sample sizes can make the results of different studies difficult to compare. Yet, such comparisons are important for assessing the status of populations of conservation concern. We propose a simple approach of using a single well-studied reference population as a "yardstick" to calibrate results of different studies to the same scale, enabling comparisons. We use a well-studied large carnivore, the brown bear (Ursus arctos), as a case study to demonstrate the approach. As a reference population, we genotyped 513 brown bears from Slovenia using 20 polymorphic microsatellite loci. We used this dataset to calibrate and compare heterozygosity and allelic richness for 30 brown bear populations from 10 different studies across the global distribution of the species. The simplicity of the reference population approach makes it useful for other species, enabling comparisons of genetic diversity estimates between previously incompatible studies and improving our understanding of how genetic diversity is distributed along a species range.
Subspecies and Distribution. C.s.siculaG.S.Miller,1901—SicilyandUsticaI,Italy. C.s.aegatensisHutterer,1991—EgadiIs(Favignana,Levanzo,andMarettimo),Italy. C. s. calypso Hutterer, 1991 — Gozo and possibly Comino Is (records from northern long-eared owl, Asio otus, pellets), Malta. Population on Malta I may also be referred to this subspecies, but probably extinct. in Soricidae
Subspecies and Distribution. C.s.siculaG.S.Miller,1901—SicilyandUsticaI,Italy. C.s.aegatensisHutterer,1991—EgadiIs(Favignana,Levanzo,andMarettimo),Italy. C. s. calypso Hutterer, 1991 — Gozo and possibly Comino Is (records from northern long-eared owl, Asio otus, pellets), Malta. Population on Malta I may also be referred to this subspecies, but probably extinct.
Distribution. Recorded from high elevations in the S two-thirds of the Cordillera Central, NW Luzon I, Philippines. Previous accounts of A. datae in the Sierra Madre and in the lowlands of Luzon refer to other species of Apomys that remained unrecognized until 2011. in Muridae
Distribution. Recorded from high elevations in the S two-thirds of the Cordillera Central, NW Luzon I, Philippines. Previous accounts of A. datae in the Sierra Madre and in the lowlands of Luzon refer to other species of Apomys that remained unrecognized until 2011.
Circular Reference Collection
<p>Circular References collected at runtime</p>
FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain).
FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain).
FIGURE 9. Kalanchoe tomentosa, a tetraploid with 2n in A review of the cytotaxonomy of Kalanchoe (Crassulaceae subfam. Kalanchooideae) with reference to evolutionary trends in the genus
FIGURE 9. Kalanchoe tomentosa, a tetraploid with 2n = 68, is included in K. [subg. Kalanchoe] sect. Stellatopilosae. Photograph: Gideon F. Smith.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.